3300029516: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005366-25

Overview

Basic Information

• IMG/M Taxon OID: 3300029516
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283422 | Ga0244799
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005366-25
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 172790873
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047126	Metagenome	150	N
F051936	Metagenome	143	N
F062845	Metagenome	130	N
F070093	Metagenome	123	N
F071325	Metagenome	122	N
F088921	Metagenome	109	N
F092228	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244799_100003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	409875
Ga0244799_100724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	35991
Ga0244799_101427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21329
Ga0244799_102295	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	14058
Ga0244799_105009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6548
Ga0244799_128671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	681
Ga0244799_129721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	653

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244799_100003	Ga0244799_100003224	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIVERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITPNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNLLYCYTINYILPRGLANSWVKGYLIDQLAIS
Ga0244799_100724	Ga0244799_10072429	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDNFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQNKSAHILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0244799_101427	Ga0244799_1014272	F088921	LEAAKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTLFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEFYGEKNQIIVANKSAVIRDKMRSKS
Ga0244799_102295	Ga0244799_1022956	F051936	MKQEGTGLCPVLPLALRGKAFGFSVLQEHAVMTLVISIFFATLIIRYLSIXXXXXXXX
Ga0244799_105009	Ga0244799_1050091	F071325	LLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFGELLSCATAYL
Ga0244799_128671	Ga0244799_1286711	F070093	VCRVSNFESLLLAEFCPFRIDPPIEPEQEHLSKLYSGSGIHSLSELNPKSTQTLS
Ga0244799_129721	Ga0244799_1297212	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLN