3300029488: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001827-39

Overview

Basic Information

• IMG/M Taxon OID: 3300029488
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283249 | Ga0244072
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001827-39
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 183496520
• Sequencing Scaffolds: 20
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F043945	Metagenome	155	N
F047126	Metagenome	150	N
F052660	Metagenome	142	N
F055739	Metagenome	138	N
F056309	Metagenome	137	N
F056623	Metagenome	137	N
F058154	Metagenome	135	N
F070093	Metagenome	123	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F074899	Metagenome / Metatranscriptome	119	N
F075480	Metagenome	119	N
F078822	Metagenome	116	N
F087336	Metagenome	110	N
F090515	Metagenome	108	N
F092228	Metagenome	107	N
F097493	Metagenome	104	Y
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244072_100028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	216941
Ga0244072_100267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	77719
Ga0244072_103517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7844
Ga0244072_103674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7401
Ga0244072_104873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	5382
Ga0244072_105364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4843
Ga0244072_105518	All Organisms → cellular organisms → Bacteria	4686
Ga0244072_107015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3600
Ga0244072_108306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3011
Ga0244072_114468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1716
Ga0244072_117150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1448
Ga0244072_117353	Not Available	1431
Ga0244072_118432	All Organisms → cellular organisms → Bacteria	1345
Ga0244072_120684	All Organisms → cellular organisms → Bacteria	1197
Ga0244072_126151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	939
Ga0244072_126768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	918
Ga0244072_128473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	860
Ga0244072_129978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	813
Ga0244072_130160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	808
Ga0244072_133662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	716

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244072_100028	Ga0244072_10002884	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRETKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTFENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYLNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGVADLWVKGYLIDQLAIS
Ga0244072_100267	Ga0244072_10026733	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGRATPEKTEDSRLFGVKIF
Ga0244072_103517	Ga0244072_1035178	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSTEKP
Ga0244072_103674	Ga0244072_1036746	F052660	MRILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLYGGILVGIALPIPSHRAKSHDFAHWWPATAGHSRSADALPGKSNH
Ga0244072_104873	Ga0244072_1048731	F047126	VYLKTKKMMNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC
Ga0244072_105364	Ga0244072_1053646	F072366	LREGAXXXXXXXLERQGKRLTVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRTKKRFLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSDFXXXXXX
Ga0244072_105518	Ga0244072_1055185	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMILIRAEIPAAKKRDWKPLIFPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGNSSQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDA
Ga0244072_107015	Ga0244072_1070153	F070133	MKRLLGLLMAVMVMMGGRAGAQASTDNASMQLIRMNPLAFRKEPVGLYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGKFDPNGEQIPHGQIILKKNRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE
Ga0244072_108306	Ga0244072_1083063	F087336	VAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERETKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0244072_114468	Ga0244072_1144681	F055739	TDVHPAQDGTEGDYQAHYLALEERHDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENEQMPPEGKPIAWRIEIDVLKAVWQTETMPDDLYEALSEEDDVAHYIREQAEQHIITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELSGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRVYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0244072_117150	Ga0244072_1171502	F090515	MIRSIRGACQEGVTTCCKTGPKAALQGTAPGRVACLEFAEGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0244072_117353	Ga0244072_1173533	F078822	LYQRSYFLSSTFFDIFSSFPNAFLKAFHPHAIRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0244072_118432	Ga0244072_1184321	F070093	LLLAEFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPNLI
Ga0244072_120684	Ga0244072_1206842	F026592	TQGIAALAAQGGVATLTERSDETFSVMQLFSADRE
Ga0244072_126151	Ga0244072_1261511	F058154	VVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0244072_126768	Ga0244072_1267681	F075480	WKMNKTKQEKWQRAYGDTPDSFRQRVAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDNLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSAGFQVDLSEADVSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK
Ga0244072_128473	Ga0244072_1284731	F043945	DVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDDENSHLMPDMPGFFRWSAESSKYERVLYDGKELTTVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCG
Ga0244072_129978	Ga0244072_1299781	F097493	LRIKRRIVNDKFAETDGDFDMDTEIAKIKHTDITFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN
Ga0244072_130160	Ga0244072_1301601	F056309	SLSVVPLLLGDSGSLSVSYGMEPEQEALSIVFFKD
Ga0244072_133662	Ga0244072_1336621	F102166	RPKTCLLCGMPIRQRNDRKNPLHVALTHAIMEETWRISPEMRVFLMKKLFSLLLVLALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTSLALNTLEEMVDYITEIANGESADNVFAMWQADIGAV