3300029479: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001894-56

Overview

Basic Information

• IMG/M Taxon OID: 3300029479
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283314 | Ga0244137
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001894-56
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 164666588
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F051936	Metagenome	143	N
F062845	Metagenome	130	N
F067846	Metagenome	125	Y
F071325	Metagenome	122	N
F073671	Metagenome	120	N
F078822	Metagenome	116	N
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F088921	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244137_100217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	75769
Ga0244137_100259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	64123
Ga0244137_100307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	56351
Ga0244137_100719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	25784
Ga0244137_100843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	22178
Ga0244137_101744	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	11627
Ga0244137_102162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9565
Ga0244137_102361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	8770
Ga0244137_130129	Not Available	857

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244137_100217	Ga0244137_10021757	F087335	MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEICILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCVTEETVEEMYQRVSNYDKEKEL
Ga0244137_100259	Ga0244137_10025950	F067846	METTQRQWEMASFTAYDKAQEQYDAYGRAVEMEIESIKEDIANCDDDVICAFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEIRIKILVAMAEDRLEQLEEDYRKGYILND
Ga0244137_100259	Ga0244137_10025956	F073671	MNKEHAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV
Ga0244137_100307	Ga0244137_10030713	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHTRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0244137_100719	Ga0244137_10071925	F088921	LGATIRLYKIGTGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKREKYINGEIYGEKNQIIVANKSAKIRDKMWSKS
Ga0244137_100843	Ga0244137_1008431	F078822	NAFLKAFLPHAVRFPATFLLVHRFYLAFEELLSCATAYL
Ga0244137_101744	Ga0244137_1017441	F051936	QVLFFPLALRGKAFGFSVLQEHAVMAPVISIFSAMLIIKHLSIHISIKK
Ga0244137_102162	Ga0244137_1021628	F062845	VTHITTKWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSCA
Ga0244137_102361	Ga0244137_1023611	F071325	LRFHKFQYCSIFKVLLALLSDSSIIISNVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0244137_130129	Ga0244137_1301292	F047125	MDVALLLMVLGVMLSGFRVADVLDHIRRKIIQQEGRR