3300029476: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001904-94

Overview

Basic Information

• IMG/M Taxon OID: 3300029476
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283323 | Ga0244146
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001904-94
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 158475688
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F051936	Metagenome	143	N
F070093	Metagenome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244146_100527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	52326
Ga0244146_101253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	20043
Ga0244146_102216	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	9744
Ga0244146_113252	Not Available	1433

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244146_100527	Ga0244146_10052714	F047125	MDVVLLLMVLGVMLSGFWAADALDYMRKEIIRQEGKRRGWWS
Ga0244146_101253	Ga0244146_1012531	F070093	SNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPN
Ga0244146_102216	Ga0244146_1022161	F051936	GQVLFFPLALRGKAFGFSVLQEHAVITPVISISHSRFIIRHLSIHISIKK
Ga0244146_113252	Ga0244146_1132521	F070093	CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNTI