3300029474: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001893-50

Overview

Basic Information

• IMG/M Taxon OID: 3300029474
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283313 | Ga0244136
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001893-50
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 137905142
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F042910	Metagenome	157	N
F051936	Metagenome	143	N
F052660	Metagenome	142	N
F056623	Metagenome	137	N
F056682	Metagenome	137	Y
F067845	Metagenome	125	N
F073656	Metagenome	120	N
F076190	Metagenome	118	Y
F087335	Metagenome	110	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244136_100131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	87835
Ga0244136_100304	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	53289
Ga0244136_100620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	33738
Ga0244136_101918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13286
Ga0244136_102170	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	11801
Ga0244136_103025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	8374
Ga0244136_104996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4787
Ga0244136_105225	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	4579
Ga0244136_105559	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4220
Ga0244136_112229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1551
Ga0244136_115162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1182
Ga0244136_117945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	951

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244136_100131	Ga0244136_10013175	F056682	VKMQSRAEKVANQPIGQDKMYPASFGTFPLKNRSTFPIQELRKNREKQEVL
Ga0244136_100304	Ga0244136_10030470	F099451	MEIKNVGQLRKIIENLSDDYEIEMRVRRKLTDEEIIELHKKYGRIYPYPYETSYSELEFDDVGVSDKVLCLGVTLNE
Ga0244136_100620	Ga0244136_10062017	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRKRSYGQFLYGGILMGIALPIPSHRAKSHDFAYWWPAAAGHSRSADALPGKSNS
Ga0244136_101918	Ga0244136_10191811	F026489	LLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKKWATPEKPEDSRLFGVKIF
Ga0244136_102170	Ga0244136_10217017	F099451	MAIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDDEIRELHNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKDK
Ga0244136_103025	Ga0244136_1030257	F087335	MIELYFNDANLLPENREEEQYAEATLNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCVTEETVEEIMEGVKP
Ga0244136_104996	Ga0244136_1049963	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDSTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNDFLLWSGCYGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAAGHSEMGAAFIDYNGTAYVVAVFR
Ga0244136_105225	Ga0244136_1052253	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244136_105559	Ga0244136_1055595	F051936	PLALRGKAFGFSVLQEHAVMTPVIRIFFVMLIVRYLSIHISIKK
Ga0244136_112229	Ga0244136_1122293	F076190	VRTAGGSITISVKNVFTAASRVSGRVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL
Ga0244136_115162	Ga0244136_1151622	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATPKRDWKPLILPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0244136_117945	Ga0244136_1179451	F042910	KRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC