3300029433: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_30_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029433
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282922 | Ga0243761
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_30_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 238833741
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F067845	Metagenome	125	N
F070093	Metagenome	123	N
F076064	Metagenome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243761_1002650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	15949
Ga0243761_1002971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	14367
Ga0243761_1009445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3974
Ga0243761_1011871	All Organisms → cellular organisms → Bacteria	3002
Ga0243761_1018878	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1697
Ga0243761_1019656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1616
Ga0243761_1022698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1355
Ga0243761_1027412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1077
Ga0243761_1028757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1020

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243761_1002650	Ga0243761_10026501	F056309	VKGTKRTCLRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFKD
Ga0243761_1002971	Ga0243761_100297115	F059106	VILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243761_1009445	Ga0243761_10094455	F026592	VCQNRLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0243761_1011871	Ga0243761_10118711	F070093	CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNYADSIS
Ga0243761_1018878	Ga0243761_10188781	F076064	ENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0243761_1019656	Ga0243761_10196563	F056309	TVKGTKRTCLRRTPSLSVVPLFLGASDSLSVSYGMEPEQEALSTVSFKD
Ga0243761_1022698	Ga0243761_10226983	F056309	CLRRTPSLSVVPLLLGDSDSLSVSYGIEPEQEALSIVSFKD
Ga0243761_1027412	Ga0243761_10274121	F070093	CRVSTFESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPKQI
Ga0243761_1028757	Ga0243761_10287571	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR