3300029428: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029428
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133095 | Gp0281904 | Ga0242788
• Sample Name: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 210206419
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056309	Metagenome	137	N
F070093	Metagenome	123	N
F078822	Metagenome	116	N
F088920	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0242788_101243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	26428
Ga0242788_101257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	26026
Ga0242788_101337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	24209
Ga0242788_101475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21415
Ga0242788_102562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	10702
Ga0242788_102722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	9956

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0242788_101243	Ga0242788_10124323	F078822	FPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0242788_101257	Ga0242788_10125710	F056309	VXXXXPSLSVVPLLLGDSDSLSVSYGYGMEPEQEALSIVSFKD
Ga0242788_101337	Ga0242788_1013371	F070093	RVSNFESLLLAEFYPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0242788_101475	Ga0242788_10147518	F078822	SFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL
Ga0242788_102562	Ga0242788_10256210	F088920	LFVKWNPKNHHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFACLAAFSLHTSPKISGQTSLHQPWLSPYCLFKD
Ga0242788_102722	Ga0242788_1027221	F070093	SLLLAEFCPFRIDPPMEPEQEHLSKLYSVSGIHSLPELNPD