NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029426

3300029426: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_2



Overview

Basic Information
IMG/M Taxon OID3300029426 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133095 | Gp0281905 | Ga0242789
Sample NameHuman feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_2
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size203314247
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047126Metagenome150N
F056309Metagenome137N
F059106Metagenome134N
F068811Metagenome124N
F068855Metagenome124N
F070093Metagenome123N
F073656Metagenome120N
F074899Metagenome / Metatranscriptome119N
F078004Metagenome117N
F078822Metagenome116N
F088914Metagenome109N
F088920Metagenome109Y
F088921Metagenome109N
F090513Metagenome108N
F101355Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0242789_100068All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158198834Open in IMG/M
Ga0242789_100085All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales183113Open in IMG/M
Ga0242789_100128All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae151431Open in IMG/M
Ga0242789_100446All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis68509Open in IMG/M
Ga0242789_100454All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae67650Open in IMG/M
Ga0242789_100497All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques61935Open in IMG/M
Ga0242789_100510All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae60668Open in IMG/M
Ga0242789_100552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales55748Open in IMG/M
Ga0242789_100712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena44830Open in IMG/M
Ga0242789_101214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena24191Open in IMG/M
Ga0242789_101530All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales18466Open in IMG/M
Ga0242789_101832All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena14934Open in IMG/M
Ga0242789_103838All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6246Open in IMG/M
Ga0242789_107324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3253Open in IMG/M
Ga0242789_107940All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2997Open in IMG/M
Ga0242789_149931All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0242789_100068Ga0242789_100068178F068855VPTVEAKGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW
Ga0242789_100085Ga0242789_10008518F073656MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0242789_100128Ga0242789_10012834F088914VGRILPVCSGFFVFWSRKEGVNYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK
Ga0242789_100446Ga0242789_10044648F090513MLKIFAMAKYVRKMEWILLHIKHILYMQPFGVLKIAPQPQSIGNKNGTKAVLQGWAAAFVPYMLSFTYIKGRNTD
Ga0242789_100454Ga0242789_10045418F047126VYLKTKKMTNISQTQAGFKSKSLGILCEFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSSLELPCILCSLLRYFHILSKKLQKTC
Ga0242789_100497Ga0242789_1004971F059106HASVWKIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0242789_100510Ga0242789_10051051F078822LSFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL
Ga0242789_100552Ga0242789_10055219F088921LGATIRLYKIGAGENHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSES
Ga0242789_100712Ga0242789_10071243F070093CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNSK
Ga0242789_101214Ga0242789_10121422F070093NFESLLLAEFYPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0242789_101530Ga0242789_1015302F074899MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSK
Ga0242789_101832Ga0242789_1018321F056309RRMPSLSVVPLLLGDSDSLTVSYGMEPEQEALSIVSFKD
Ga0242789_103838Ga0242789_1038387F068811MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSASQYCNKKAAVLLILNENVSETLCIFSIDETNCCRI
Ga0242789_107324Ga0242789_1073242F101355MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKKACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0242789_107940Ga0242789_1079404F088920LFVKWNPKNHHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFACLAAFSLHTSPKISGQTSLYQPWLSPYCLFKD
Ga0242789_124799Ga0242789_1247992F078004MVLFPVCFLFFCKSSTGRLSAVAGSAALDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKALTAGTVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF
Ga0242789_149931Ga0242789_1499312F088920VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKRAIPLLFVPTLFSARLTAFSLHTSPKISGQTSLHQ

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