3300029426: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029426
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133095 | Gp0281905 | Ga0242789
• Sample Name: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 203314247
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047126	Metagenome	150	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F068811	Metagenome	124	N
F068855	Metagenome	124	N
F070093	Metagenome	123	N
F073656	Metagenome	120	N
F074899	Metagenome / Metatranscriptome	119	N
F078004	Metagenome	117	N
F078822	Metagenome	116	N
F088914	Metagenome	109	N
F088920	Metagenome	109	Y
F088921	Metagenome	109	N
F090513	Metagenome	108	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0242789_100068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	198834
Ga0242789_100085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	183113
Ga0242789_100128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	151431
Ga0242789_100446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	68509
Ga0242789_100454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	67650
Ga0242789_100497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	61935
Ga0242789_100510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	60668
Ga0242789_100552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	55748
Ga0242789_100712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	44830
Ga0242789_101214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	24191
Ga0242789_101530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18466
Ga0242789_101832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	14934
Ga0242789_103838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6246
Ga0242789_107324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3253
Ga0242789_107940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2997
Ga0242789_149931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0242789_100068	Ga0242789_100068178	F068855	VPTVEAKGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW
Ga0242789_100085	Ga0242789_10008518	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0242789_100128	Ga0242789_10012834	F088914	VGRILPVCSGFFVFWSRKEGVNYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK
Ga0242789_100446	Ga0242789_10044648	F090513	MLKIFAMAKYVRKMEWILLHIKHILYMQPFGVLKIAPQPQSIGNKNGTKAVLQGWAAAFVPYMLSFTYIKGRNTD
Ga0242789_100454	Ga0242789_10045418	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCEFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSSLELPCILCSLLRYFHILSKKLQKTC
Ga0242789_100497	Ga0242789_1004971	F059106	HASVWKIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0242789_100510	Ga0242789_10051051	F078822	LSFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL
Ga0242789_100552	Ga0242789_10055219	F088921	LGATIRLYKIGAGENHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSES
Ga0242789_100712	Ga0242789_10071243	F070093	CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNSK
Ga0242789_101214	Ga0242789_10121422	F070093	NFESLLLAEFYPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0242789_101530	Ga0242789_1015302	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSK
Ga0242789_101832	Ga0242789_1018321	F056309	RRMPSLSVVPLLLGDSDSLTVSYGMEPEQEALSIVSFKD
Ga0242789_103838	Ga0242789_1038387	F068811	MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSASQYCNKKAAVLLILNENVSETLCIFSIDETNCCRI
Ga0242789_107324	Ga0242789_1073242	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKKACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0242789_107940	Ga0242789_1079404	F088920	LFVKWNPKNHHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFACLAAFSLHTSPKISGQTSLYQPWLSPYCLFKD
Ga0242789_124799	Ga0242789_1247992	F078004	MVLFPVCFLFFCKSSTGRLSAVAGSAALDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKALTAGTVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF
Ga0242789_149931	Ga0242789_1499312	F088920	VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKRAIPLLFVPTLFSARLTAFSLHTSPKISGQTSLHQ