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Sample 3300029423
3300029423: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_30_stool_2
Overview
Basic Information
IMG/M Taxon OID 3300029423 Open in IMG/M GOLD Reference Gs0133117 | Gp0282963 | Ga0243802 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_30_stool_2 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 198839201 Sequencing Scaffolds 4 Novel Protein Genes 5 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 1 All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F026592 Metagenome / Metatranscriptome 197 Y F051936 Metagenome 143 N F070093 Metagenome 123 N F101356 Metagenome 102 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243802_101512 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 22760 Open in IMG/M Ga0243802_110440 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 2304 Open in IMG/M Ga0243802_121138 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 1123 Open in IMG/M Ga0243802_132918 All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides 721 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243802_101512 Ga0243802_1015121 F070093 PNAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN Ga0243802_110440 Ga0243802_1104401 F026592 VCQNRLRTASPQGIAALAVQGGVATLTERSDATFSVKQFSSADGE Ga0243802_113545 Ga0243802_1135451 F101356 PKVHSFERWPLVSVLPRQFMDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSDSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ Ga0243802_121138 Ga0243802_1211383 F026592 ANSILCCLRTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE Ga0243802_132918 Ga0243802_1329181 F051936 MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVIIIFFATLIIRYLSIHISI
