3300029414: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_28_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029414
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282959 | Ga0243798
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_28_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 191717031
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243798_100067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	202960
Ga0243798_100248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	109771
Ga0243798_100757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	46931
Ga0243798_100772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	46086
Ga0243798_101558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	19976
Ga0243798_110462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1966

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243798_100067	Ga0243798_100067184	F059106	LQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV
Ga0243798_100248	Ga0243798_1002481	F056309	RTCLRRTPSLSVVPLLLGVSDSLSVSYGMEPEQEALSIVSFKD
Ga0243798_100757	Ga0243798_10075744	F056309	RTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVFFKD
Ga0243798_100772	Ga0243798_10077244	F056309	TPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0243798_101558	Ga0243798_1015581	F070093	CPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS
Ga0243798_110462	Ga0243798_1104621	F026592	QNRLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE