3300029411: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_13_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029411
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283022 | Ga0243861
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_13_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 171049157
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F056309	Metagenome	137	N
F070093	Metagenome	123	N
F071325	Metagenome	122	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243861_100116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	126144
Ga0243861_100733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	35291
Ga0243861_101473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	15649
Ga0243861_104383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4823
Ga0243861_107843	All Organisms → Viruses → Predicted Viral	2743
Ga0243861_110531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2078
Ga0243861_111890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1855
Ga0243861_132722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	718

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243861_100116	Ga0243861_100116104	F070093	FCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0243861_100733	Ga0243861_1007331	F071325	SIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243861_101473	Ga0243861_10147315	F056309	CLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0243861_104383	Ga0243861_1043831	F070093	SLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPK
Ga0243861_107843	Ga0243861_1078432	F097493	MYKFYSKNGTAQFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHMDITLEQPTSEQLSQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLLLRIAEMEVAITNEQTTN
Ga0243861_110531	Ga0243861_1105315	F070093	EFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPN
Ga0243861_111890	Ga0243861_1118901	F070093	LLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLMN
Ga0243861_132722	Ga0243861_1327221	F032286	MVKWICQIVTPVRHRALVFNTRLFAGNAADDTLVTGGTFRFCRLVCLCVKRRNIILNGKRRSLLNSTLFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRRGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKIADFHAYGQDRKRAEI