3300029375: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 079_4_28_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029375
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283095 | Ga0243934
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 079_4_28_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 263033478
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F067720	Metagenome	125	Y
F070093	Metagenome	123	N
F078693	Metagenome	116	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243934_1000002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	427006
Ga0243934_1000661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	55654
Ga0243934_1000896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	45027
Ga0243934_1001911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	23540
Ga0243934_1002029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	22302
Ga0243934_1003701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12519
Ga0243934_1003704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12509
Ga0243934_1005250	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	8483
Ga0243934_1007713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	5528
Ga0243934_1009342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4417
Ga0243934_1029947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1067

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243934_1000002	Ga0243934_100000298	F032286	MVKWVCQIVTPIRHRALIFDVRLFAGNTVDDALVTGGTFRFCRLMCLCVKRRNIKPDSKRRSLPDSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRRKAGI
Ga0243934_1000661	Ga0243934_100066153	F026489	VEAEGCSLLVAKENQKTTSDFDALEPRKKGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0243934_1000896	Ga0243934_10008961	F070093	CPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNLNL
Ga0243934_1001911	Ga0243934_100191123	F056309	TPSLNVVPLLLGDSDSLSVSYGMEPEQEALSIVFFKD
Ga0243934_1002029	Ga0243934_100202922	F059106	ILLQIFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0243934_1003701	Ga0243934_100370117	F029444	MEASGQLTGFEPEALMSWTVSNLQRPLREDVSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0243934_1003704	Ga0243934_10037042	F067720	MSSTTYGHIGDLTDMFAVQEQFRHATKMVCDFVDLNKIDHFAVIGNMVRNAGQLPQPFWLGAACGGGSCSAARYAAKT
Ga0243934_1005250	Ga0243934_10052504	F105374	MKKRVALLVALCIWKVVAAQTPYGELPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVVRVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
Ga0243934_1007713	Ga0243934_10077131	F056309	LRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSLVSFKD
Ga0243934_1009342	Ga0243934_10093421	F078693	MRLWRLAEGKWFSRWWRGAKRFFIKANVLFCVPKENQKSTSDFDALDPRERGCSPLSDPE
Ga0243934_1029947	Ga0243934_10299472	F056309	KGTKRTCLRRTPSLSVVPLFLGDSDSLSVSYGMEPEQEALSIVSFKD