3300029373: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 076_4_28_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029373
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283075 | Ga0243914
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 076_4_28_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 194816870
• Sequencing Scaffolds: 8
• Novel Protein Genes: 19
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F055715	Metagenome	138	N
F055775	Metagenome	138	N
F056309	Metagenome	137	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F070093	Metagenome	123	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078693	Metagenome	116	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F089590	Metagenome	109	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243914_100097	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	149105
Ga0243914_100440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	66582
Ga0243914_100755	Not Available	42698
Ga0243914_101344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	25624
Ga0243914_101369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	25192
Ga0243914_103821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8106
Ga0243914_105295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	5515
Ga0243914_114159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1623

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243914_100097	Ga0243914_10009711	F080673	MDEIELLRLQDEALFYLRDNITKDEAYYVLTTDEDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLAASYIGVDMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL
Ga0243914_100097	Ga0243914_100097113	F050794	MQDLRIQRAKVLMMLYTSHYFVNNRQKQLLDHTYALSRDQAFDYMIEFNKRLSDKVGIKCTMDILLPTDDDNTNIIIEYNGIIKKLMKEAGKLELDTDAIKEMMRDLLNELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSI
Ga0243914_100097	Ga0243914_100097116	F077313	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTRIGFDIQHPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTAIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRQQSQMRYKNGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKVKIGLKSVYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIIFRSMKEYGLTEEDIADAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYSTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVARRTWADNVNAQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0243914_100097	Ga0243914_100097141	F106193	VGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSEYIKP
Ga0243914_100097	Ga0243914_100097149	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGVNKTRNDIKDLDNKTNIKSKDVDDKKESRWPIVWIVAGILMILLVLVYILKKIKVL
Ga0243914_100097	Ga0243914_100097150	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILAVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0243914_100097	Ga0243914_100097152	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNFYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQACKMTSFPIVDIPGLEFLAVSHTMYVNDGIPVDKLSRSKKLIYIDLQNAGQRMTVIPEAITNKTEVYYLYMFNMLDLRDIESSGIRNIKNMKNLETLDLSSCYLDRYIKEFNDLPKLKTLNITPGPSDMWNYFDINTLPFFEVDKINPNITDFAFLNDWKNGERRTGWNDDNMSGRGLEHLTSLGATHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGRRNQFYGLSVSMYNSTYPYENQRPTGQEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKPA
Ga0243914_100097	Ga0243914_100097171	F058555	METKIALLQKIKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVVAYLTIVNVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYKHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKNISDLYDEVKKYNGIANTKDRKNVTIGCLRLLYKGKYMHILISTEYIKDVFLGEKSYEMSKAG
Ga0243914_100097	Ga0243914_1000972	F057001	MTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKDIVPALVSLAKDKEVVIQLCKDILPRINNTFCAYKEIERVYLDKQDQDKNTKLPPDKVAEISITGKEHKRFGYNEPIEYEGGVYYDVFNGSDKRIVKCAVPIKRYTYNLIAKCITYYLTHPKNKR
Ga0243914_100097	Ga0243914_10009747	F078005	MKKSKFVKELEKIIDMVKAEDDDFEYGGKVIFYKEDDDNYEISVKNIEMDLTVEANTMASMDDRTFACLMSEVYKQKFTKAITISEDEDDEDN
Ga0243914_100097	Ga0243914_10009767	F083451	MQKDQIMEEKDVLNLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMVDVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE
Ga0243914_100097	Ga0243914_10009777	F076653	MTLMDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDQCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRFWLEKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0243914_100440	Ga0243914_10044021	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEISGIIAEKESQIFGCRFVGFDRPKKAAPFFNF
Ga0243914_100755	Ga0243914_10075549	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEAGTITDVILVTKEVEKKISYARVVSWLVDTTGDSPKYTIDIINANSEAVAAIALN
Ga0243914_101344	Ga0243914_10134415	F078693	VRGVKGFFIKANVLFCVPKENQKSTSDFDALDPRERGYSPLSDPEGVVETEKS
Ga0243914_101369	Ga0243914_10136927	F070093	NFESLFLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPKLF
Ga0243914_103821	Ga0243914_1038212	F055715	LTKANEFDKINELLIERTAKKFERASENKLKKFLTNEKLCDKINELIRVRTAKILDN
Ga0243914_105295	Ga0243914_1052956	F056309	STVKGTKRTCLRRTPSLSVVPLLFGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243914_114159	Ga0243914_1141593	F070093	SLLLAEFCPFRIDPPMKPEQERLSKLYSGPGIQRLPELNPKQN