3300029372: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_5_2_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029372
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283124 | Ga0243963
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_5_2_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 171585035
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia obeum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N
F078693	Metagenome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243963_100446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	53943
Ga0243963_101219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	23020
Ga0243963_103016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	8469
Ga0243963_105322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia obeum	4342
Ga0243963_106466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3440
Ga0243963_106941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3149
Ga0243963_109813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2062
Ga0243963_130095	Not Available	658

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243963_100446	Ga0243963_1004461	F056309	RRMPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243963_101219	Ga0243963_1012191	F056309	TCLRRMPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243963_103016	Ga0243963_1030161	F070093	EFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPNLI
Ga0243963_105322	Ga0243963_1053221	F059106	VILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIEVFV
Ga0243963_106466	Ga0243963_1064664	F056309	RTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243963_106941	Ga0243963_1069411	F026592	NSILCCLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADRE
Ga0243963_109813	Ga0243963_1098132	F078693	MVFAPVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGVVETEKS
Ga0243963_130095	Ga0243963_1300951	F059106	VILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV