3300029348: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_29_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029348
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282961 | Ga0243800
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_29_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 176644158
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F056309	Metagenome	137	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F070093	Metagenome	123	N
F076064	Metagenome	118	N
F078004	Metagenome	117	N
F078822	Metagenome	116	N
F087335	Metagenome	110	N
F088914	Metagenome	109	N
F088920	Metagenome	109	Y
F088921	Metagenome	109	N
F090513	Metagenome	108	N
F097493	Metagenome	104	Y
F101356	Metagenome	102	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243800_100049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	206073
Ga0243800_100055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	199931
Ga0243800_100121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	138608
Ga0243800_100311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	83405
Ga0243800_100411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	68523
Ga0243800_100496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	58916
Ga0243800_100524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	56617
Ga0243800_100746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	42458
Ga0243800_100844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	38237
Ga0243800_100896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	35923
Ga0243800_101729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16862
Ga0243800_101967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14464
Ga0243800_103012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	8069
Ga0243800_103175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7521
Ga0243800_104352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4828
Ga0243800_107593	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2406
Ga0243800_130093	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	640

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243800_100049	Ga0243800_1000491	F056309	TCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVFFKD
Ga0243800_100055	Ga0243800_100055203	F070093	LLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPN
Ga0243800_100121	Ga0243800_100121116	F088921	LGGCKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRNKMWSK
Ga0243800_100311	Ga0243800_10031179	F056309	PSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0243800_100411	Ga0243800_10041166	F068811	MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSASQYCNKKAAVLLILNENVSEALCIFSIDKTNCCRI
Ga0243800_100496	Ga0243800_10049613	F088914	VGRILPVCSGFFVFWGRKEGANYQISVKSFSTLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK
Ga0243800_100523	Ga0243800_10052346	F078004	LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGSATLDIHMIRHALVIAVINTFYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
Ga0243800_100524	Ga0243800_10052425	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC
Ga0243800_100746	Ga0243800_10074618	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIGCVTEETVEEVYQRASNYDFDEPCAGNMPS
Ga0243800_100844	Ga0243800_10084434	F078822	QRSYFLSSTFFDIFLSFPNAFLKTFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243800_100896	Ga0243800_10089620	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0243800_101729	Ga0243800_1017294	F097493	MYKFYSKNGQAQFYEHGVEIDGTVYGIHADRDILRIKRRIVNDKFAETDGDFDMDTEIAKIQHTGITFEQPTAEQLEQIQAKTFDSMSELKQHVQSVMSGDETMSQDEINAMLLLQIAELKAGVSNE
Ga0243800_101967	Ga0243800_10196710	F088920	VSANLHHYPAFWAGLILHLILHFSQKVAIFVPKRAISLLFVPKLFFAGLSVLFPQTSPKISGQTSLYQPWLSPYCLFKD
Ga0243800_103012	Ga0243800_1030125	F090513	MEWKLLHIKHILYMRPFGALKITPQSVGNKNGTKAVLQGLAAAFVPYMLSFTYIHLLI
Ga0243800_103175	Ga0243800_1031755	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLNLVYTVALDADGNMGYTDNLNHFLYWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0243800_104352	Ga0243800_1043521	F056309	RMCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243800_107593	Ga0243800_1075932	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTHLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0243800_110342	Ga0243800_1103423	F101356	VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSDSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0243800_130093	Ga0243800_1300931	F105374	LLVALCIWKVVAAQTPYGEMPERFRPDALPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIDNQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP