3300029315: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_5_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029315
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133095 | Gp0281869 | Ga0242753
• Sample Name: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_5_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 157316190
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N
F073656	Metagenome	120	N
F089591	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0242753_100166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	96991
Ga0242753_100257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	78828
Ga0242753_101784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	18210
Ga0242753_102752	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	11181
Ga0242753_105078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4835

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0242753_100166	Ga0242753_10016696	F059106	WKIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRATTGVHV
Ga0242753_100257	Ga0242753_1002571	F056309	VKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0242753_101784	Ga0242753_10178420	F070093	NFESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPNLIKSQFYAPSHHP
Ga0242753_102752	Ga0242753_1027526	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0242753_105078	Ga0242753_1050784	F056309	LRRMPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0242753_117876	Ga0242753_1178762	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGSFSYNGCEIGDFVMWEAKNENVHELLGDDNNKPSFDYRETFYTIGDGKVVVYEDGFLTDEVRMTYYRNPVRVDLAGYINAAGDRSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK