3300029253: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011692-133

Overview

Basic Information

• IMG/M Taxon OID: 3300029253
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192964 | Ga0168699
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011692-133
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 210907962
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F056309	Metagenome	137	N
F056682	Metagenome	137	Y
F070093	Metagenome	123	N
F074899	Metagenome / Metatranscriptome	119	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168699_1000188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	91308
Ga0168699_1001135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	19741
Ga0168699_1002237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	10797
Ga0168699_1003098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	8329
Ga0168699_1003699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7207
Ga0168699_1004172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	6552
Ga0168699_1019847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1813

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168699_1000188	Ga0168699_100018833	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPHPPPPFAQRFIACFCSQTAAASQSKSAHILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0168699_1001135	Ga0168699_10011357	F044554	VLAGRFIPVLCASIARLFPCRTEIARYLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0168699_1002237	Ga0168699_10022377	F056682	MKMQSRAGKVANQSVGQSEMYPASFWAFLSKNRSTFSFQELGKIQENQEVL
Ga0168699_1003098	Ga0168699_100309810	F056309	PSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFMD
Ga0168699_1003699	Ga0168699_100369911	F026489	NQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0168699_1004172	Ga0168699_10041721	F070093	PFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNFMEANQ
Ga0168699_1019847	Ga0168699_10198473	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGMEGSTVVGKDEVGSSNLPSSSNINRLNRLI