3300029174: Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ1

Overview

Basic Information

• IMG/M Taxon OID: 3300029174
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127413 | Gp0192415 | Ga0168029
• Sample Name: Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ1
• Sequencing Status: Permanent Draft
• Sequencing Center: Michigan State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29749109
• Sequencing Scaffolds: 22
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	8
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_5	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquariaum Water Viral Communities From Chicago, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: Chicago
• Coordinates
  • Lat. (^o): 41.87
  • Long. (^o): -87.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001484	Metagenome / Metatranscriptome	686	Y
F008183	Metagenome / Metatranscriptome	337	Y
F014122	Metagenome / Metatranscriptome	265	Y
F024268	Metagenome / Metatranscriptome	206	Y
F028485	Metagenome / Metatranscriptome	191	Y
F031688	Metagenome / Metatranscriptome	182	Y
F042051	Metagenome / Metatranscriptome	159	Y
F045186	Metagenome / Metatranscriptome	153	Y
F052619	Metagenome / Metatranscriptome	142	Y
F053563	Metagenome / Metatranscriptome	141	N
F062887	Metagenome / Metatranscriptome	130	Y
F063690	Metagenome / Metatranscriptome	129	Y
F078200	Metagenome / Metatranscriptome	116	Y
F079968	Metagenome / Metatranscriptome	115	Y
F085584	Metagenome	111	Y
F086799	Metagenome / Metatranscriptome	110	Y
F086975	Metagenome / Metatranscriptome	110	Y
F091439	Metagenome / Metatranscriptome	107	Y
F091908	Metagenome / Metatranscriptome	107	Y
F104784	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168029_100009	All Organisms → cellular organisms → Bacteria	34952
Ga0168029_100034	All Organisms → cellular organisms → Bacteria → Proteobacteria	17357
Ga0168029_100145	Not Available	7955
Ga0168029_100177	All Organisms → cellular organisms → Bacteria	7211
Ga0168029_100603	All Organisms → Viruses → Predicted Viral	3669
Ga0168029_100634	All Organisms → Viruses → Predicted Viral	3527
Ga0168029_100848	All Organisms → Viruses → Predicted Viral	2972
Ga0168029_101057	All Organisms → Viruses → Predicted Viral	2600
Ga0168029_102107	Not Available	1707
Ga0168029_102774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_5	1441
Ga0168029_103205	Not Available	1321
Ga0168029_103242	Not Available	1311
Ga0168029_103958	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	1163
Ga0168029_104065	All Organisms → Viruses → Predicted Viral	1144
Ga0168029_104610	Not Available	1062
Ga0168029_107609	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	808
Ga0168029_108988	Not Available	747
Ga0168029_109196	Not Available	740
Ga0168029_112214	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	656
Ga0168029_113811	All Organisms → cellular organisms → Bacteria	620
Ga0168029_115250	Not Available	590
Ga0168029_115866	All Organisms → Viruses	577

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168029_100009	Ga0168029_10000923	F086799	MKVTKVAYSRLVSKGNYENAKIEIEAEVEQGDLARDVYEKIKEWVDKRVEIEKMSDAAIMRARRVMEDKRHHTLAQIEEAEELLKKCGPDDSLPF
Ga0168029_100034	Ga0168029_10003417	F014122	MSFLAARNAVAIGLGGIVSLFGGRASEVAQSNLLTESGDNLVQEDGGLILLE
Ga0168029_100145	Ga0168029_1001452	F008183	MAFENAEIDPVKYGVLWQKVQDMDKKVDKMERQLEQLLELANKGKGGLWFGMTVASAVSGFVGFVISHWKGN
Ga0168029_100177	Ga0168029_1001776	F014122	MSFLAARNAIGIGLGGILSLFGGRGSDQAVGNLLCENGDNLVQEDGGLILLE
Ga0168029_100603	Ga0168029_1006033	F104784	MIPINKSAYLTVRVADKTRTKFHAKARKFGTPSEVLRELIDAFIEDRVTINPPVTGNPKEKLYVPRSQD
Ga0168029_100634	Ga0168029_1006341	F091439	MRAVLSPDDLKRGDLAEVGWHPAEIIDYDEKPADTDQSTNCIFKLKLIDGPNKGVVCQKLFNEKALGFGKNLWKTLQFPYDPVKGYELTTELFKQTIGSKLKVYIKRGKSNKGNEFNDVTDFMPLG
Ga0168029_100848	Ga0168029_1008484	F079968	MIGTIFRKHIERYEAGTSGGSLYQAWKVVADLGQGIYSCVRVDNTQDPMGAASPIKRTFKEADIKKYLQNNR
Ga0168029_101057	Ga0168029_1010574	F085584	MKKPLILSLEDENTSLFSKQYLSIPDLHEEIEKRLEDLKTMDKRKKKQLMQAKEDVNFLIDMYNAKAKFKTYNKVK
Ga0168029_102107	Ga0168029_1021072	F024268	MTELYSGTEAVSTTEHSLTTDTAGPDADTTPGVFQLFLDLSDMVAGDQLQIRLYEKVRSGDTQRVVEEWILTGPQSKPNFTLPAFALMHGWDFTLDALAGTITVNWSIRQIG
Ga0168029_102774	Ga0168029_1027742	F045186	MASGKSGGGGKFMDNAVGMCSYKKNPMSAASRVAPMCGPGANPDQRKANKLLQKAHRDWDSQRGQSGM
Ga0168029_103205	Ga0168029_1032053	F078200	MAAVYANSSNQIAALKELYTDDKEYMKDLVYKENPFLALVPKNESPDGFAGKR
Ga0168029_103242	Ga0168029_1032421	F031688	MKTYIVYVNGFEAGTIKAGSHNAAEKKAKAKHPGKDVSVAYTEV
Ga0168029_103958	Ga0168029_1039582	F091908	MAKSLNECPKVVTKPGGRVGGTNAAPKVVTNPTRYTGGMNKAACDVPKKRK
Ga0168029_104065	Ga0168029_1040653	F086975	MLSPRLTSCPECASIPALIADIDCKLASLANNLYNNVVFMLNQPVPGGVMLALINYRRILAYKYCNPDYAAPFTVNMIAS
Ga0168029_104610	Ga0168029_1046101	F053563	FPSHDQKRLSTEGQNVVDNRFWGSDPSILNKQIKKAKEISGQVEDPKTGEILEEGAPVYGVYFNAAGDNVNFSTMVSDVTLNMLPNMKITKKAAKQFDEKLRERIPDWPGLNNLEASDIDAVRTYFRGPNRGEARKAFSEEMAKPRSMKLGFPDQASVRAAVSKADMLGMGSGDAAGRMIAQIDYNAPVDPVSMHTTYPAGLKRVEGTPVYRMADESGNFRDVPTSMFFNDFYNDRIIDGVVPPEATTIRSMELRQATQPATRELSDIINEYLYQTDDTRRGYPYNR
Ga0168029_107609	Ga0168029_1076091	F028485	GVLASFPEGYLYGTLQCYYDKNKNVEEAQKWQVRFDDAYGLIEDQNYRGRWRGGDQHLTSEFQPRDYRYSFK
Ga0168029_108988	Ga0168029_1089881	F063690	KLLKSAPRMRNTLPQNITRGNGVKNPQKASAYVGKGVLKNGDTITAIKGSITPVPNGPLIKKKGPFKGSTLKKGGAIVKVGGQTHKVFKNKKGDVIVDHTAGIPAGKWDKINLTKKAKAKTVKQGVASVRKWHRENPNYYKKKK
Ga0168029_109196	Ga0168029_1091961	F078200	MATFATASNQVAALKELYDNPSNYLKDLVYKKNPLLALISKNESPSGMAGKYLP
Ga0168029_112214	Ga0168029_1122141	F042051	MTTFGEVSWNDDLEGFNNKKTNSKDLFLKLDEGSNEVRLITQPFQYLVHKYKKDESDKYGQKVSCSAVHGSCPLCAMGDKAKPRWLLGVISRKTGTYKILDISFAVFSQVRKLARNTQRWGDPTKYDIDIVVDKQGGATGYYSVQPVSKEPLSAEDQKIKDNADLDDLKRRVTPPDRDWE
Ga0168029_113811	Ga0168029_1138111	F001484	LATLRGSGVITQWDVENKQIQVTPAISGAVTGDKLVVNGISSPASLPALYGVPYHHSNASAGTWLGFSRSNTPEIRANRVNAASSGLALTFARLAMNKVGNRVGIDNTFKPRAWTHPCQQQAYEEIGQLVSIIQKMPKEESLNMYFGDGMQLAGAALTPSFNWNQTRIDFVVDEVWGRGEILPVGFYTTDGRRIFEIRGPSGGVAT
Ga0168029_115250	Ga0168029_1152503	F062887	MPVRKTSGGYKYGNKGKLYKGKGAKAKATKQGRAIRASQAKKK
Ga0168029_115866	Ga0168029_1158661	F052619	FPSHDQARYDFSTDGINPTLVAFVFTLDQLPDYTDFTRLFDMYKIQKIEIQWNPEYTELTDAALVSNAVNVYVNSVVDLTDASSPSSVDELLQSQQLQQTSVTKVHSRKWQPTFLMAGLVPCSCWLPTSSPSERHYCVKVAVPPTGVAMTFRSRAKFSLEFANVN