Metagenome / Metatranscriptome Family F091908

Basic Information
Family ID	F091908
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	55 residues
Representative Sequence	MAGQMKTANKCPEVVTSPTRYTGGKNANVTVVTNPTRYTGGLNKAACDVPTGKLKK
Number of Associated Samples	87
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.74 %
% of genes near scaffold ends (potentially truncated)	12.15 %
% of genes from short scaffolds (< 2000 bps)	59.81 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (44.860 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (18.692 % of family members)
Environment Ontology (ENVO)	Unclassified (35.514 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (47.664 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. 1BS_KBA_SWE02_21mDRAFT_100206243 2Ga0031658_10364533 3Ga0007795_101094062 4Ga0068880_13719272 5Ga0068881_10719732 6Ga0068882_100152210 7Ga0049081_101793543 8Ga0049080_100167361 9Ga0073902_101939443 10Ga0073685_10002857 11Ga0078117_10074102 12Ga0078117_10944161 13Ga0075471_103478622 14Ga0073934_100132666 15Ga0075473_104541892 16Ga0102976_11694482 17Ga0102689_175960812 18Ga0102691_10885022 19Ga0102917_13412882 20Ga0105747_11362172 21Ga0114341_1000047621 22Ga0114351_10214592 23Ga0114351_13069972 24Ga0114336_100068769 25Ga0114363_10151056 26Ga0114876_10684607 27Ga0105090_100293248 28Ga0105090_107201062 29Ga0114962_1000009230 30Ga0114977_102618442 31Ga0105104_107743392 32Ga0105097_102920062 33Ga0116174_100570692 34Ga0116191_100003144 35Ga0116243_101181612 36Ga0153799_10000117 37Ga0157208_1000148912 38Ga0154020_100803336 39Ga0172365_106518663 40Ga0172366_107701582 41Ga0172363_100049177 42Ga0177922_111785333 43Ga0167666_10387421 44Ga0181352_10023695 45Ga0181352_11527142 46Ga0181344_10639721 47Ga0181344_10807631 48Ga0181344_11016563 49Ga0169931_107725212 50Ga0194035_100003360 51Ga0194059_10455902 52Ga0181351_11674265 53Ga0214919_104737812 54Ga0244776_102990311 55Ga0209172_100121382 56Ga0208249_11179292 57Ga0208974_11621112 58Ga0208975_11661453 59Ga0209392_10010636 60Ga0209704_10137742 61Ga0209063_11511012 62Ga0209593_101414882 63Ga0209134_101182021 64Ga0209972_100231444 65Ga0209985_101783361 66Ga0209668_107337953 67Ga0209668_108195203 68Ga0209253_101130042 69Ga0209191_101267314 70Ga0209391_101006711 71Ga0168029_1039582 72Ga0307380_1002441610 73Ga0307380_101054055 74Ga0307380_103202342 75Ga0307380_104107873 76Ga0307380_112138351 77Ga0307376_101913897 78Ga0307375_101023191 79Ga0315291_100106992 80Ga0315291_101897931 81Ga0315293_102480771 82Ga0315293_103861004 83Ga0315293_107512783 84Ga0315293_108096563 85Ga0315907_1003093515 86Ga0315899_1009466610 87Ga0315909_104500391 88Ga0315909_104698101 89Ga0315909_107757402 90Ga0315297_100707172 91Ga0315285_105913903 92Ga0315904_111887012 93Ga0315294_100418054 94Ga0315274_1000344218 95Ga0315274_104976325 96Ga0315274_111499293 97Ga0315289_105302392 98Ga0315906_105897664 99Ga0315284_103406922 100Ga0315903_1006286712 101Ga0315277_101158254 102Ga0315277_108193692 103Ga0315273_1000152714 104Ga0334980_0013104_3327_3497 105Ga0335000_0677358_319_489 106Ga0335012_0611433_328_492 107Ga0335068_0000229_25757_25927
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. 1BS_KBA_SWE02_21mDRAFT_100206243 2Ga0031658_10364533 3Ga0068880_13719272 4Ga0049081_101793543 5Ga0078117_10074102 6Ga0073934_100132666 7Ga0114351_10214592 8Ga0114336_100068769 9Ga0105090_100293248 10Ga0116191_100003144 11Ga0116243_101181612 12Ga0172366_107701582 13Ga0167666_10387421 14Ga0168029_1039582 15Ga0307380_1002441610 16Ga0307380_104107873 17Ga0307375_101023191
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56 1Ga0073902_101939443 2Ga0031658_10364533 3Ga0068880_13719272 4Ga0078117_10944161 5Ga0075473_104541892 6Ga0102917_13412882 7Ga0114351_13069972 8Ga0114363_10151056 9Ga0105104_107743392 10Ga0116191_100003144 11Ga0116243_101181612 12Ga0172363_100049177 13Ga0177922_111785333 14Ga0167666_10387421 15Ga0214919_104737812 16Ga0209172_100121382 17Ga0208975_11661453 18Ga0209392_10010636 19Ga0209704_10137742 20Ga0209668_107337953 21Ga0168029_1039582 22Ga0307380_1002441610 23Ga0307380_104107873 24Ga0307376_101913897 25Ga0315291_101897931 26Ga0315293_103861004 27Ga0315293_107512783 28Ga0315899_1009466610 29Ga0315297_100707172 30Ga0315904_111887012 31Ga0315277_108193692 32Ga0315273_1000152714 33Ga0335000_0677358_319_489 34Ga0335068_0000229_25757_25927
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00210	Ferritin	2.80
PF02945	Endonuclease_7	2.80
PF12705	PDDEXK_1	1.87
PF05708	Peptidase_C92	0.93
PF00041	fn3	0.93
PF02617	ClpS	0.93
PF07453	NUMOD1	0.93
PF01510	Amidase_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.94 %
Unclassified	root	N/A	42.06 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	45.79 %
Unclassified	root	N/A	42.06 %
Viruses	superkingdom	All Organisms → Viruses	12.15 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.86 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
Unclassified	root	N/A	42.06 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	23.36 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.93 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	1.87 %
Unclassified	root	N/A	42.06 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	23.36 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.93 %
Candidatus Pacearchaeota	clade	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
Unclassified	root	N/A	42.06 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	1.87 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Candidatus Dojkabacteria	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria	23.36 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	0.93 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1.87 %
Unclassified	root	N/A	42.06 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Candidatus Dojkabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	23.36 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	0.93 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1.87 %
Unclassified	root	N/A	42.06 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Candidatus Dojkabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	23.36 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1.87 %
Unclassified	root	N/A	42.06 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.93 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013127\|Ga0172365_10651866	Not Available	599	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10770158	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	561	Open in IMG/M
(restricted) 3300013130\|Ga0172363_10004917	All Organisms → cellular organisms → Bacteria	10789	Open in IMG/M
3300000792\|BS_KBA_SWE02_21mDRAFT_10020624	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	2117	Open in IMG/M
3300003860\|Ga0031658_1036453	Not Available	838	Open in IMG/M
3300004773\|Ga0007795_10109406	Not Available	797	Open in IMG/M
3300005416\|Ga0068880_1371927	Not Available	668	Open in IMG/M
3300005418\|Ga0068881_1071973	All Organisms → Viruses → Predicted Viral	1193	Open in IMG/M
3300005421\|Ga0068882_1001522	All Organisms → Viruses	2663	Open in IMG/M
3300005581\|Ga0049081_10179354	Not Available	766	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	5.61%
Environmental	Environmental	94.39%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	86.92%
Terrestrial	Environmental → Terrestrial	7.48%
Wastewater	Engineered → Wastewater	5.61%

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge	2.80%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	2.80%
Aquaculture	Environmental → Aquatic → Aquaculture	0.93%
Freshwater	Environmental → Aquatic → Freshwater	78.50%
Marine	Environmental → Aquatic → Marine	5.61%
Soil	Environmental → Terrestrial → Soil	7.48%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.87%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	6.54%
Coastal	Environmental → Aquatic → Marine → Coastal	2.80%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.80%
Lake	Environmental → Aquatic → Freshwater → Lake	39.25%
Lentic	Environmental → Aquatic → Freshwater → Lentic	22.43%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.48%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	7.48%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	2.80%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Aquaculture → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	18.69%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	3.74%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	20.56%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	18.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.48%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	7.48%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.80%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	2.80%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Aquaculture → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	1.87%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.93%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	2.80%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.87%
Aquarium Water	Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water	0.93%
Aquatic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic	0.93%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.87%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.87%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.93%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	7.48%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.61%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.87%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.87%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.93%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	13.08%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.80%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.87%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	3.74%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	3.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	7.48%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.67%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.87%
Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water	1.87%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	18.69%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	6.54%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000792	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m	Environmental	Open in IMG/M
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental	Open in IMG/M
3300004773	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA1M	Environmental	Open in IMG/M
3300005416	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel2S_0400h metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005418	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel3S_1000h metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005421	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005656	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB19-Kit	Engineered	Open in IMG/M
3300005664	Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
BS_KBA_SWE02_21mDRAFT_100206243	3300000792	Marine	MKNQNPSATVVKSPTRYTGGKNASVQASRNPTRYKGGLNNAACDVPTGKLKK*
Ga0031658_10364533	3300003860	Freshwater Lake Sediment	MAGTMKTQNKFPEVVTNPTQYKGGMNACPIVVTNPTRYTGGMNKAVCDVPTGKLKK*
Ga0007795_101094062	3300004773	Freshwater	MAGQMKTANTFPVVVTTPTRYKGGMNAYPTVVTNPTKYTGGMNIAACDVPNGKLKK*
Ga0068880_13719272	3300005416	Freshwater Lake	MSSHMKNKNQYPTVVTNPTKYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK*
Ga0068881_10719732	3300005418	Freshwater Lake	LETITYIDMSSHMKNKNQYPTVVTNPTKYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK*
Ga0068882_100152210	3300005421	Freshwater Lake	PTVVTNPTKYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK*
Ga0049081_101793543	3300005581	Freshwater Lentic	MAGQMKTANSFPVVVTNPTRYTGGMNAYPTVVTNPTRYTGGLNKAACDVPMCCTHNKSKKY*
Ga0049080_100167361	3300005582	Freshwater Lentic	MAGTMKTQNKFPEVVTNPTQYRGGMNAYPIVVTNPTKYTGGMNKAVCDVPTGKLKK*
Ga0073902_101939443	3300005656	Activated Sludge	MAGQMKTANKCPEVVTSPTRYTGGKNANVTVVTNPTRYTGGLNKAACDVPTGKLKK*
Ga0073685_10002857	3300005664	Aquatic	MAGQMKTANKCPEVVTSPTRYTGGKNANVTVVTNPTRYNGGLNKAACDVPNGKLKK*
Ga0078117_10074102	3300005758	Lake Water	MTGQMKNPNSYPTVVTNPTRYTGGKNASVKASTNPTKYTGGYNKAACDVPNAKLIKK*
Ga0078117_10944161	3300005758	Lake Water	MAGNMKNSNQFPTVVTKPTQYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK*
Ga0075471_103478622	3300006641	Aqueous	MAGTMKNANKYPEVVTNPTRYTGGKNGYPVVVTNPTKYTGGLNKAACDVPTGKLKK*
Ga0073934_100132666	3300006865	Hot Spring Sediment	MDKNMKNRNECPHVVQNPTRYKGGMNKAPEVVQNPTRYTGGLNKAACDVPKKK*
Ga0075473_104541892	3300006875	Aqueous	MTGTMKNQNPSATVVKSPTRYTGGKNASVQASRNPTRYTGGLNKAACDVPTGKLKK*
Ga0102976_11694482	3300007169	Freshwater Lake	MAGNMKNSNQYPTVVTKPTQYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK*
Ga0102689_175960812	3300007304	Freshwater Lake	PTVVTNPTQYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK*
Ga0102691_10885022	3300007319	Freshwater Lake	MKNKNQYPTVVTNPTKYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK*
Ga0102917_13412882	3300007590	Estuarine	MTGQMKNPNSYPTVVTNPTRYTGGKNASVTVITNPTKYTGGLNKAACDVPAGKLKK*
Ga0105747_11362172	3300007974	Estuary Water	MAGQMKTQNTFPTVVTNPTKYKGGMNTCPVVVTNPTKYTGGMNTAACDVPNGKLKK*
Ga0114341_1000047621	3300008108	Freshwater, Plankton	MAGTMKTQNKFPEVVQKPTQYKGGMNACPIVVTNPTRYTGGMNKAVCDVPTGKLKK*
Ga0114351_10214592	3300008117	Freshwater, Plankton	MTGSMKNPNKYPEVVTKPTPYKGGKNTYPTVVTNPTRYKGGLNKAATDVPTGKLKK*
Ga0114351_13069972	3300008117	Freshwater, Plankton	MTGQMKNPNSYPTVVTNPTRYTGGKNASVTASTNPTKYTGGYNKAACDVPNAKLIKK*
Ga0114336_100068769	3300008261	Freshwater, Plankton	MAGQMKTANSYPQVVTNPTRYTGGKNANVTVVTNPTRYTGGKNIEACNVPAGKLKK*
Ga0114363_10151056	3300008266	Freshwater, Plankton	MTGSMKNPNKYPEVVTKPTPYKGGKNTYPTVVTNPTRYKGGLNKAATDIPTGKLKK*
Ga0114876_10684607	3300008448	Freshwater Lake	MAGQMKTQNKYPEVVTNPTRYTGGKNTYPVVVTNPTRYTGGLNKAACDVPTGKLKK*
Ga0105090_100293248	3300009075	Freshwater Sediment	YPEVVQKPTQYKGGMNACPTVVTNPTRYTGGLNKTVCDIPTGKLKK*
Ga0105090_107201062	3300009075	Freshwater Sediment	MAGQMKTANSFPVVVTNPTRYTGGMNAYPTVVTNPTRYTGGLNKAACEVPLCCVSKNK*
Ga0114962_1000009230	3300009151	Freshwater Lake	MAGQMKTANTFPVVVTTPTRYKGGMNAYPIVVTNPTKYTGGMNIAACDVPNGKLKK*
Ga0114977_102618442	3300009158	Freshwater Lake	MAGQMKTANTFPVVVTTPTRYKGGMNTYPTVVTNPTKYTGGMNIAACDVPNGKLKK*
Ga0105104_107743392	3300009168	Freshwater Sediment	MAGQMKTANSFPVVVTNPTRYTGGMNAYPTVVTNPTRYTGGMNIAACDVPNGKLKP*
Ga0105097_102920062	3300009169	Freshwater Sediment	MAGQMKTANSFPVVVTNPTRYKGGMNAYPTVVTNPTRYTGGMNKAACEVPLCCVSKNK*
Ga0116174_100570692	3300009681	Anaerobic Digestor Sludge	MAGQMKTANKCPEVVTYPTRYTGGKNANVTVVTNPTRYTGGLNKAACDVPTGKLKK*
Ga0116191_100003144	3300009716	Anaerobic Digestor Sludge	MAGVKKTANKFPTVVTNPTPYKGGMNACPTVVTNPTKYNGGLNKAACDVPSKKK*
Ga0116243_101181612	3300010344	Anaerobic Digestor Sludge	MAGTMKTGNKCPEVVKTPTQYKGGMNKAPEVVKNPTRYTGGLNKAATNVPNKK*
Ga0153799_10000117	3300012012	Freshwater	MAGQMKTANSFPVVVTNPTRYTGGMNTYPTVVTNPTRYTGGLNKAACEVPLCCVSKK*
Ga0157208_1000148912	3300012667	Freshwater	MAGQMKTANSFPVVVTNPTRYTGGMNTYPTVVTNPTRYTGGMNKAACDVPMCCTHSKSKKY*
Ga0154020_100803336	3300012956	Active Sludge	MAGQMKTANKCPEVVTSPTRYTGGKNANVTVVTNPTRYTGGLNKAACDVPNGKLKK*
(restricted) Ga0172365_106518663	3300013127	Sediment	KMTGQMKNPNSYPTVVTNPTKYTGGKNASVTALTNPTKYTGGYNKGACDVPNAKLIKK*
(restricted) Ga0172366_107701582	3300013128	Sediment	METINLNMTGSMKNQNKCPEVVTKPTRYTGGKNASPIVVTNPTRYTGGMNKAACDVPKKG
(restricted) Ga0172363_100049177	3300013130	Sediment	MTGSMKNQNKCPEVVTKPTRYTGGKNASPIVVTNPTRYTGGMNKAACDVPKKGGK*
Ga0177922_111785333	3300013372	Freshwater	MAGSMKTQNKFPEVVTNPTRYTGGKNACPVVVTNPTRYKGGLNTAACDVPKKK*
Ga0167666_10387421	3300015194	Glacier Forefield Soil	MAKSKNQYPTVVTKPTPYKGGLNTPLKVSTNPTRYTGGLNKAACDVPKNK*
Ga0181352_10023695	3300017747	Freshwater Lake	MTGQMKNPNSYPVVVTNPTRYTGGKNASVTIVTNPTKYTGGMNKAACDVPAGKLKR
Ga0181352_11527142	3300017747	Freshwater Lake	MTGQMKNPNSYPTVVTNPTKYTGGKNASVTVVTNPTKYTGGLNKAACDVPAGKLKK
Ga0181344_10639721	3300017754	Freshwater Lake	MTGQMKNPNSYPVVVTNPTRYTGGKNASVTVVTNPTKYTGGMNKAACDVPAGKLKR
Ga0181344_10807631	3300017754	Freshwater Lake	MTGQMKNPNSYPTVVTNPTRYTGGKNASVTVVTNPTRYTGGLNKAACDVPAGKLKK
Ga0181344_11016563	3300017754	Freshwater Lake	MTGQMKNPNSYPVVVTNPTRYTGGKNASVTVVTNPTKYTGGMNKAACDVPAGKLKK
Ga0169931_107725212	3300017788	Freshwater	MTGQMKNPNSYPTVVTNPTKYTGGKNASVTALTNPTKYTGGYNKGACDVPNAKLIKK
Ga0194035_100003360	3300020167	Anoxic Zone Freshwater	MAGQMKTANKFPQVVTSPTRYTGGKNADVTVVTNPTRYTGGLNKAACDVPNGRLKK
Ga0194059_10455902	3300021600	Anoxic Zone Freshwater	MAGQMKTANTFPVVVTTPTRYKGGMNAYPTVVTNPTKYTGGMNIAACDVPNGKLKK
Ga0181351_11674265	3300022407	Freshwater Lake	QMKTQNKYPEVVTNPTRYTGGKNTYPVVVTNPTRYTGGLNKAACDVPTGKLKK
Ga0214919_104737812	3300023184	Freshwater	MAGQMKTANSFPVVVTNPTRYTGGMNTYPTVVTNPTRYTGGLNKAACEVPLCCVSKNK
Ga0244776_102990311	3300024348	Estuarine	GQMKNPNSYPTVVTNPTRYTGGKNASVTVITNPTKYTGGLNKAACDVPAGKLKK
Ga0209172_100121382	3300025310	Hot Spring Sediment	MDKNMKNRNECPHVVQNPTRYKGGMNKAPEVVQNPTRYTGGLNKAACDVPKKK
Ga0208249_11179292	3300025532	Freshwater	AGQMKTANTFPVVVTTPTRYKGGMNAYPTVVTNPTKYTGGMNIAACDVPNGKLKK
Ga0208974_11621112	3300027608	Freshwater Lentic	MAGTMKTQNKFPEVVTNPTQYRGGMNAYPIVVTNPTKYTGGMNKAVCDVPTGKLKK
Ga0208975_11661453	3300027659	Freshwater Lentic	MAGQMKTANSFPVVVTNPTRYTGGMNAYPTVVTNPTRYTGGLNKAACDVPMCCTHNKSKK
Ga0209392_10010636	3300027683	Freshwater Sediment	MAGQMKTANTFPVVVTTPTRYKGGMNAYPIVVTNPTKYTGGMNIAACDVPNGKLKK
Ga0209704_10137742	3300027693	Freshwater Sediment	MAGTMKTQNKYPEVVQKPTQYKGGMNACPTVVTNPTRYTGGLNKTVCDIPTGKLKK
Ga0209063_11511012	3300027705	Activated Sludge	MAGQMKTANKCPEVVTSPTRYTGGKNANVTVVTNPTRYTGGLNKAACDVPTGKLKK
Ga0209593_101414882	3300027743	Freshwater Sediment	MAGTMKTQNKFPEVVTNPTQYKGGMNACPIVVTNPTRYTGGMNKAVCDVPTGKLKK
Ga0209134_101182021	3300027764	Freshwater Lake	MAGQMKTANSFPVVVTNPTRYTGGMNTYPTVVTNPTRYTGGMNKAACEVPLCCVS
Ga0209972_100231444	3300027793	Freshwater Lake	MSSHMKNKNQYPTVVTNPTKYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK
Ga0209985_101783361	3300027806	Freshwater Lake	MSSHMKNKNQYPTVVTNPTQYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK
Ga0209668_107337953	3300027899	Freshwater Lake Sediment	MAGQMKTQNQFPQVVTNPTRYTGGKNANVTAVTNPTRYTGGKNTEACNVPAGKLKK
Ga0209668_108195203	3300027899	Freshwater Lake Sediment	MAGQMKTANSFPVVVTNPTRYTGGMNTYPTVVTNPTRYTGGLNKAACEVPLCCISKK
Ga0209253_101130042	3300027900	Freshwater Lake Sediment	MTGQMKNPNSYPTVVTNPTKYTGGKNASVTVVTNPTKYTGGMNKAACDVPAGKLKK
Ga0209191_101267314	3300027969	Freshwater Lake	MAGQMKTANTFPVVVTTPTRYKGGMNTYPTVVTNPTKYTGGMNIAACDVPNGKLKK
Ga0209391_101006711	3300027975	Freshwater Sediment	YPEVVQKPTQYKGGMNACPTVVTNPTRYTGGLNKTVCDIPTGKLKK
Ga0168029_1039582	3300029174	Aquarium Water	MAKSLNECPKVVTKPGGRVGGTNAAPKVVTNPTRYTGGMNKAACDVPKKRK
Ga0307380_1002441610	3300031539	Soil	MAGSMKNSNKFPTVVTAPTGRVGGTNQEVTVCINPTRYTGGFNKAACDVPTGKLKK
Ga0307380_101054055	3300031539	Soil	MAGSMKNPNKCPVVVTTPGGRVGGTNASVTVLTNPTKYTGGFNKGACDVPTGKLKNK
Ga0307380_103202342	3300031539	Soil	MTGSMKNPNVCPVVVTSPGGRVGGTNASVTVLTNPTKYTGGFNKAACDVPTGKLKK
Ga0307380_104107873	3300031539	Soil	MKNPNKYPQVVTSPTKYTGGKNLAACCEVVTNPTKYTGGLNKAACDVPKKYK
Ga0307380_112138351	3300031539	Soil	MKAKQLNKFPTVVTAPTGRVGGTNQEVTVVTNPTRYTGGLNKAACDVPVAKLKNK
Ga0307376_101913897	3300031578	Soil	MAGSMKNQNKFPTVVTAPTGRVGGTNQEVTVVTNPTRYTGGLNKAACDVPVAKLKNK
Ga0307375_101023191	3300031669	Soil	MKNPNVCPVVVTSPGGRVGGTNASVTVLTNPTKYTGGFNKAACDVPTGKLKK
Ga0315291_100106992	3300031707	Sediment	MAGSMKNSNKFPTVVTTPTGRVGGTNKEVTVSTNPTKYTGGFNKAACDVPTGKLKK
Ga0315291_101897931	3300031707	Sediment	MAGSMKNPNKYPTVVTSPTGRVGGTNASVTVSTNPTKYTGGFNKAACDVPTGKLKNK
Ga0315293_102480771	3300031746	Sediment	MAGSMKNSNKFPTVVTTPTGRVGGTNKEVTVSTNPTKYTGGFNKAACDVPTGKLKNK
Ga0315293_103861004	3300031746	Sediment	MAGQMKTQNTFPTVVTNPTKYKGGMNTCPVVVTNPTKYTGGMNIAACDVPNGKLKK
Ga0315293_107512783	3300031746	Sediment	MAGTLKNSNKFPEVVTNPTKYTGGKNTYPTVVTNPTRYTGGLNKAACDVPTGKLKK
Ga0315293_108096563	3300031746	Sediment	MTGQMKNPNVYPVVVTTPGGRVGGSNTSVTVNTNPTKYTGGFNKAACDVPTGKLKK
Ga0315907_1003093515	3300031758	Freshwater	MTGSMKNPNKYPEVVTKPTPYKGGKNTYPTVVTNPTRYKGGLNKAATDIPTGKLKK
Ga0315899_1009466610	3300031784	Freshwater	MAGQMKTQNKYPEVVTNPTRYTGGKNTYPVVVTNPTRYTGGLNKAACDVPTGKLKK
Ga0315909_104500391	3300031857	Freshwater	NPNKYPEVVTKPTPYKGGKNTYPTVVTNPTRYKGGLNKAATDIPTGKLKK
Ga0315909_104698101	3300031857	Freshwater	YPTVVTNPTQYRGGMNAPVTVETNPTRYTGGLNKAACDVPTGKLKK
Ga0315909_107757402	3300031857	Freshwater	MTGQMKNPNSYPTVVTNPTRYTGGKNASVTASTNPTKYTGGYNKAACDVPNAKLIKK
Ga0315297_100707172	3300031873	Sediment	MAGSMKTGNKFPTVVTSPTGRVGGTNKEVTVSTNPTRYTGGFNKAACDVPVAKLKNK
Ga0315285_105913903	3300031885	Sediment	MAGQMKTANTFPVVVTTPTRYKGGMNTYPIVVTNPTKYTGGMNIAACDVPNGKLKK
Ga0315904_111887012	3300031951	Freshwater	MAGTMKNANKYPEVVKNPTRYTGGKNTYPTVVTNPTKYTGGLNKAACDVPTGKLKK
Ga0315294_100418054	3300031952	Sediment	MTGTMKNQNPSATVVKSPTRYTGGKNASVQASRNPTRYTGGLNKAACDVPTGKLKKXLXK
Ga0315274_1000344218	3300031999	Sediment	MAGSMKNSNKFPTVVTSPTGRVGGTNQEVTVCINPTRYTGGFNKAACDVPVAKLKNK
Ga0315274_104976325	3300031999	Sediment	MTGQMKNPNVYPVVVTTPGGRVGGSNTSVTVNTNPTKYTGGFNKAACDVPTGKLKNK
Ga0315274_111499293	3300031999	Sediment	MAGSMKTANKFPTVVTTPTGRVGGTNKEVTVCINPTRYTGGLNKAACDVPVAKLKNK
Ga0315289_105302392	3300032046	Sediment	MAGQMKTANTFPIVVTTPTRYNGGMNTYPTVVTNPTKYTGGMNIAACDVPNGKLKK
Ga0315906_105897664	3300032050	Freshwater	MTGTMKNQNPSATVVKSPTRYTGGKNASVQASRNPTRYTGGLNKAACDVPTGKLKK
Ga0315284_103406922	3300032053	Sediment	MAGTMKTQNKFPEVVQKPTQYKGGMNACPTVVTNPTRYTGGLNKTVCDIPTGKLKK
Ga0315903_1006286712	3300032116	Freshwater	MTGSMKNPNKYPEVVTKPTPYKGGKNTYPTVVTNPTRYKGGLNKAATDVPTGKLKK
Ga0315277_101158254	3300032118	Sediment	MAGQMKTANSFPVVVTNPTRYKGGMNAYPTVVTNPTRYTGGLNKAACEVPLCCVSKK
Ga0315277_108193692	3300032118	Sediment	MAGTMKNPNKSPTVVTSPTGRVGGSNQEVTVLTNPTKYTGGFNKAACDVPTGKLKK
Ga0315273_1000152714	3300032516	Sediment	MAKTLNTFPTVVTKPGGRVGGTNKEVTVCTNPTKYTGGFNKAACDVPTGKLKK
Ga0334980_0013104_3327_3497	3300033816	Freshwater	MAGTMKNQNKCPEVVTKPTQYKGGISAYPTVVTNPTKYTGGLNKAACDIPTGKLKK
Ga0335000_0677358_319_489	3300034063	Freshwater	MAGTMKNQNKCPEVVTKPTQYKGGISAYPTVVTNPTKYTGGLNKVACDIPTGKLKK
Ga0335012_0611433_328_492	3300034093	Freshwater	MKTANSFPVVVTNPTRYTGGMNAYPTVVTNPTRYTGGLNKAACEVPLCCVSKKK
Ga0335068_0000229_25757_25927	3300034116	Freshwater	MTGQMKNPNVCPVVVTTPGGRVGGTNASVTVLTNPTKYTGGFNKAACDVPTGKLKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters