Sample 3300029131

Overview

Basic Information
IMG/M Taxon OID	3300029131 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0193055 \| Ga0168790
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019848-93
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	165652757
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F047126	Metagenome	150	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F067845	Metagenome	125	N
F076190	Metagenome	118	Y
F078693	Metagenome	116	N
F078822	Metagenome	116	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N
F088921	Metagenome	109	N
F089053	Metagenome	109	Y
F090515	Metagenome	108	N
F097493	Metagenome	104	Y

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F047126

Metagenome

150

F062845

Metagenome

130

F067720

Metagenome

125

F067845

Metagenome

125

F076190

Metagenome

118

F078693

Metagenome

116

F078822

Metagenome

116

F087334

Metagenome

110

F087336

Metagenome

110

F088921

Metagenome

109

F089053

Metagenome

109

F090515

Metagenome

108

F097493

Metagenome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168790_100229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	70505	Open in IMG/M
Ga0168790_100277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	61630	Open in IMG/M
Ga0168790_100299	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	56658	Open in IMG/M
Ga0168790_100584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	32351	Open in IMG/M
Ga0168790_100717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	27769	Open in IMG/M
Ga0168790_101034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	19987	Open in IMG/M
Ga0168790_101062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	19594	Open in IMG/M
Ga0168790_101283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	16718	Open in IMG/M
Ga0168790_103381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	7492	Open in IMG/M
Ga0168790_103618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	7088	Open in IMG/M
Ga0168790_115869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1602	Open in IMG/M
Ga0168790_115911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1597	Open in IMG/M
Ga0168790_116176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1568	Open in IMG/M
Ga0168790_144800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	551	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168790_100229

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

70505

Open in IMG/M

Ga0168790_100277

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

61630

Open in IMG/M

Ga0168790_100299

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

56658

Open in IMG/M

Ga0168790_100584

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

32351

Open in IMG/M

Ga0168790_100717

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

27769

Open in IMG/M

Ga0168790_101034

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

19987

Open in IMG/M

Ga0168790_101062

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

19594

Open in IMG/M

Ga0168790_101283

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

16718

Open in IMG/M

Ga0168790_103381

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

7492

Open in IMG/M

Ga0168790_103618

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

7088

Open in IMG/M

Ga0168790_115869

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1602

Open in IMG/M

Ga0168790_115911

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

1597

Open in IMG/M

Ga0168790_116176

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1568

Open in IMG/M

Ga0168790_144800

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

551

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168790_100229	Ga0168790_10022963	F076190	VTTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVKIRVEKPQNNSLYPYFQREPL
Ga0168790_100277	Ga0168790_10027718	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHIRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0168790_100299	Ga0168790_10029967	F067720	MASTTYRHLGDVTGMFAAQEQFRDITKMVCARFRGLTKTYHLGNVNKLVTFCHRFAVIGNMVRNAGQLPQPFWLGAVCGGGSRGAAPCAARA
Ga0168790_100584	Ga0168790_1005841	F078693	MALALVRGEERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC
Ga0168790_100717	Ga0168790_10071718	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRYKMRSK
Ga0168790_101034	Ga0168790_1010346	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEFREKHQ
Ga0168790_101062	Ga0168790_1010621	F078822	STFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168790_101283	Ga0168790_1012833	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKGRATPEKTEDSRLFGVKIF
Ga0168790_103381	Ga0168790_1033817	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAASVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0168790_103618	Ga0168790_10361814	F097493	MYKFYMKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTSITFKQPTSEQLSQIQAKTFDSMSDMKQYVQSIMNGELTQDEINAMLLLKIAEMEVAITNEQTTN
Ga0168790_115869	Ga0168790_1158692	F062845	MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNSVPSRACT
Ga0168790_115911	Ga0168790_1159111	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKEPAFTALLCRHIGSIRTFLKS
Ga0168790_116176	Ga0168790_1161762	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPEDVTVALPLDSTAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0168790_144800	Ga0168790_1448001	F089053	MILRRAKRALFGFDVKFGCVVDGCRPAKGCITKRIHGSANGQLKLSTAEEVNVKNMEAFL

Scaffold ID

Protein ID

Family

Sequence

Ga0168790_100229

Ga0168790_10022963

F076190

VTTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVKIRVEKPQNNSLYPYFQREPL

Ga0168790_100277

Ga0168790_10027718

F087336

MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHIRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP

Ga0168790_100299

Ga0168790_10029967

F067720

MASTTYRHLGDVTGMFAAQEQFRDITKMVCARFRGLTKTYHLGNVNKLVTFCHRFAVIGNMVRNAGQLPQPFWLGAVCGGGSRGAAPCAARA

Ga0168790_100584

Ga0168790_1005841

F078693

MALALVRGEERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC

Ga0168790_100717

Ga0168790_10071718

F088921

LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRYKMRSK

Ga0168790_101034

Ga0168790_1010346

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEFREKHQ

Ga0168790_101062

Ga0168790_1010621

F078822

STFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0168790_101283

Ga0168790_1012833

F026489

MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKGRATPEKTEDSRLFGVKIF

Ga0168790_103381

Ga0168790_1033817

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAASVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

Ga0168790_103618

Ga0168790_10361814

F097493

MYKFYMKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTSITFKQPTSEQLSQIQAKTFDSMSDMKQYVQSIMNGELTQDEINAMLLLKIAEMEVAITNEQTTN

Ga0168790_115869

Ga0168790_1158692

F062845

MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNSVPSRACT

Ga0168790_115911

Ga0168790_1159111

F090515

VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKEPAFTALLCRHIGSIRTFLKS

Ga0168790_116176

Ga0168790_1161762

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPEDVTVALPLDSTAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR

Ga0168790_144800

Ga0168790_1448001

F089053

MILRRAKRALFGFDVKFGCVVDGCRPAKGCITKRIHGSANGQLKLSTAEEVNVKNMEAFL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029131: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019848-93

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences