3300029126: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019844-87

Overview

Basic Information

• IMG/M Taxon OID: 3300029126
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193051 | Ga0168786
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019844-87
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 116584546
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168786_102430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	7073
Ga0168786_102511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	6816
Ga0168786_103015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	5564
Ga0168786_108560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1686

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168786_102430	Ga0168786_1024301	F056309	LRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0168786_102511	Ga0168786_1025117	F070093	CPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPNLI
Ga0168786_103015	Ga0168786_1030157	F059106	MHASVWKIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV
Ga0168786_108560	Ga0168786_1085601	F056309	PSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD