3300029099: Human fecal microbial communities from infant at 12 months in Denmark - 128_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029099
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193495 | Ga0169186
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 128_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 149863184
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctiJI15	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes senegalensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F056309	Metagenome	137	N
F067844	Metagenome	125	N
F070093	Metagenome	123	N
F073656	Metagenome	120	N
F074964	Metagenome	119	N
F076064	Metagenome	118	N
F076189	Metagenome	118	N
F082887	Metagenome / Metatranscriptome	113	Y
F090484	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169186_100235	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	74077
Ga0169186_100263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	69401
Ga0169186_100474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	48088
Ga0169186_100763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	30982
Ga0169186_101568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	13843
Ga0169186_101748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	12215
Ga0169186_102705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	7339
Ga0169186_105357	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3712
Ga0169186_106473	All Organisms → cellular organisms → Bacteria	3148
Ga0169186_107342	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctiJI15	2819
Ga0169186_107756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2685
Ga0169186_112514	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes senegalensis	1774
Ga0169186_113698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1639
Ga0169186_129101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	781

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169186_100235	Ga0169186_10023543	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH
Ga0169186_100263	Ga0169186_1002631	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVI
Ga0169186_100474	Ga0169186_1004741	F070093	SNFESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPN
Ga0169186_100763	Ga0169186_10076326	F070093	ESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPKNVLTLCNAVL
Ga0169186_101568	Ga0169186_10156816	F070093	VSNFESLLLAEFCPFRIDPPIEPEQEHLSKLYSGSGIHSLSELNPKSTQTLS
Ga0169186_101748	Ga0169186_10174813	F056309	TVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFMD
Ga0169186_102705	Ga0169186_1027058	F090484	MIIXXXXTVMFLQPVIYFGRAFPNWKARVIPTIAISGFLAFVSKNPICFSDGSMSKIMKLQLGRNINISLRLLEQWSSCSLFMEMYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVAIRYRVNGVQLTLGCGKVSLPKNRILIKIRKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNIGTTVDNDKELDGESVFKDIPLEELSFYNDTYLYPSSQYSSL
Ga0169186_105357	Ga0169186_1053578	F074964	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKNLVAVCSQMLPKVDNTFVKFTLYSKVYKDTNVDKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLIKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNHQ
Ga0169186_106473	Ga0169186_1064735	F070093	SNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNYADSIS
Ga0169186_107342	Ga0169186_1073423	F082887	MEKLKKIAKYTTNILAIISALIAGINAVDGITIPYATQIVQIIAVVQGVIGTYLLGQKVVTNKEDK
Ga0169186_107756	Ga0169186_1077561	F070093	RIDPPMEPEQERLFKLYSGSGIHSLPELNPNLLQNIYRM
Ga0169186_112514	Ga0169186_1125143	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEETKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNEAKRPPKPALKFY
Ga0169186_113698	Ga0169186_1136982	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL
Ga0169186_129101	Ga0169186_1291012	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC