Sample 3300029092

Overview

Basic Information
IMG/M Taxon OID	3300029092 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193491 \| Ga0169182
Sample Name	Human fecal microbial communities from mother in Denmark - 10_M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	149075007
Sequencing Scaffolds	12
Novel Protein Genes	13
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.676097	Long. (^o)	12.568337	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F055715	Metagenome	138	N
F059106	Metagenome	134	N
F067844	Metagenome	125	N
F074899	Metagenome / Metatranscriptome	119	N
F076189	Metagenome	118	N
F076190	Metagenome	118	Y
F078693	Metagenome	116	N
F089053	Metagenome	109	Y
F090513	Metagenome	108	N
F092227	Metagenome	107	N
F097172	Metagenome / Metatranscriptome	104	Y

Family

Category

Number of Sequences

3D Structure?

F044554

Metagenome

154

F055715

Metagenome

138

F059106

Metagenome

134

F067844

Metagenome

125

F074899

Metagenome / Metatranscriptome

119

F076189

Metagenome

118

F076190

Metagenome

118

F078693

Metagenome

116

F089053

Metagenome

109

F090513

Metagenome

108

F092227

Metagenome

107

F097172

Metagenome / Metatranscriptome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169182_102099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	10932	Open in IMG/M
Ga0169182_103015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8096	Open in IMG/M
Ga0169182_103654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6895	Open in IMG/M
Ga0169182_103812	All Organisms → cellular organisms → Bacteria	6634	Open in IMG/M
Ga0169182_106786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	3929	Open in IMG/M
Ga0169182_107731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3454	Open in IMG/M
Ga0169182_108786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3047	Open in IMG/M
Ga0169182_115255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1713	Open in IMG/M
Ga0169182_116483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1575	Open in IMG/M
Ga0169182_118965	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
Ga0169182_121478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1156	Open in IMG/M
Ga0169182_132711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	671	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169182_102099

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile

10932

Open in IMG/M

Ga0169182_103015

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

8096

Open in IMG/M

Ga0169182_103654

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

6895

Open in IMG/M

Ga0169182_103812

All Organisms → cellular organisms → Bacteria

6634

Open in IMG/M

Ga0169182_106786

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.

3929

Open in IMG/M

Ga0169182_107731

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

3454

Open in IMG/M

Ga0169182_108786

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3047

Open in IMG/M

Ga0169182_115255

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1713

Open in IMG/M

Ga0169182_116483

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1575

Open in IMG/M

Ga0169182_118965

All Organisms → cellular organisms → Bacteria

1338

Open in IMG/M

Ga0169182_121478

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1156

Open in IMG/M

Ga0169182_132711

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia

671

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169182_102099	Ga0169182_1020997	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDARAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0169182_103015	Ga0169182_1030157	F076189	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELPAHFDLHAIQSAQKQLRMLCNFHENTF
Ga0169182_103654	Ga0169182_1036544	F090513	MLKIFAIAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY
Ga0169182_103812	Ga0169182_1038125	F059106	HAIVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0169182_106786	Ga0169182_1067864	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHLRGCDKKGYVMDGFAKTSFYKDLNSLPAVKIGKTTINVPAVTSSVKSVSKEKGNPDYESYVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGHTYVFIIDNTLGKTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
Ga0169182_106786	Ga0169182_1067865	F097172	MKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATRKVTSAYKHHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRTILDNYKEEHPEYADVIEETYEYKTDSVNKYPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK
Ga0169182_107731	Ga0169182_1077315	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTVVGKDEVGSSNLPSSSK
Ga0169182_108786	Ga0169182_1087862	F089053	MEGPRPDKFAFGVRIGRVVDGCRPAKGCIKKRIYESANGQPELSTAAEANVKNMEAFL
Ga0169182_115255	Ga0169182_1152552	F092227	MNEQKRKHILRVGCLILAGVFLLSVLGSVILMFLV
Ga0169182_116483	Ga0169182_1164833	F076190	TAGGSITISVKNVFTAASRVSGRVWSLVRITIPNGLKSVKIRGRKTQNNSLYSYFQREPL
Ga0169182_118965	Ga0169182_1189651	F055715	LTKANEFDKMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAENLDN
Ga0169182_121478	Ga0169182_1214783	F078693	MVLALVRGAERSFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS
Ga0169182_132711	Ga0169182_1327113	F067844	MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQ

Scaffold ID

Protein ID

Family

Sequence

Ga0169182_102099

Ga0169182_1020997

F044554

VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDARAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

Ga0169182_103015

Ga0169182_1030157

F076189

VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELPAHFDLHAIQSAQKQLRMLCNFHENTF

Ga0169182_103654

Ga0169182_1036544

F090513

MLKIFAIAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY

Ga0169182_103812

Ga0169182_1038125

F059106

HAIVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV

Ga0169182_106786

Ga0169182_1067864

F097172

MKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHLRGCDKKGYVMDGFAKTSFYKDLNSLPAVKIGKTTINVPAVTSSVKSVSKEKGNPDYESYVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGHTYVFIIDNTLGKTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK

Ga0169182_106786

Ga0169182_1067865

F097172

MKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATRKVTSAYKHHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRTILDNYKEEHPEYADVIEETYEYKTDSVNKYPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK

Ga0169182_107731

Ga0169182_1077315

F074899

MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTVVGKDEVGSSNLPSSSK

Ga0169182_108786

Ga0169182_1087862

F089053

MEGPRPDKFAFGVRIGRVVDGCRPAKGCIKKRIYESANGQPELSTAAEANVKNMEAFL

Ga0169182_115255

Ga0169182_1152552

F092227

MNEQKRKHILRVGCLILAGVFLLSVLGSVILMFLV

Ga0169182_116483

Ga0169182_1164833

F076190

TAGGSITISVKNVFTAASRVSGRVWSLVRITIPNGLKSVKIRGRKTQNNSLYSYFQREPL

Ga0169182_118965

Ga0169182_1189651

F055715

LTKANEFDKMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAENLDN

Ga0169182_121478

Ga0169182_1214783

F078693

MVLALVRGAERSFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS

Ga0169182_132711

Ga0169182_1327113

F067844

MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029092: Human fecal microbial communities from mother in Denmark - 10_M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences