3300029024: Human fecal microbial communities from mother in Denmark - 45_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029024
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193703 | Ga0169709
• Sample Name: Human fecal microbial communities from mother in Denmark - 45_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115495139
• Sequencing Scaffolds: 14
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F073656	Metagenome	120	N
F074964	Metagenome	119	N
F076190	Metagenome	118	Y
F080163	Metagenome	115	N
F089053	Metagenome	109	Y
F089054	Metagenome	109	N
F090515	Metagenome	108	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169709_100012	Not Available	144902
Ga0169709_100075	Not Available	85161
Ga0169709_100395	All Organisms → cellular organisms → Bacteria	31748
Ga0169709_100655	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	20535
Ga0169709_103545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4532
Ga0169709_104743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3582
Ga0169709_106113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2921
Ga0169709_106239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2874
Ga0169709_106739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2702
Ga0169709_111117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1804
Ga0169709_111791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1718
Ga0169709_116148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1312
Ga0169709_117029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1255
Ga0169709_117466	All Organisms → cellular organisms → Bacteria	1226

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169709_100012	Ga0169709_100012103	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKNGKEE
Ga0169709_100012	Ga0169709_10001216	F074964	MITKKNVNKLQNSVIKENASNLVGAVKLYNALFANGSDLKAICKKLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCAENVVYGSEYKPFGFATAETLETKSSAKWIIKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNHQ
Ga0169709_100012	Ga0169709_10001265	F099406	MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKALESLGMVSTGVDSGYLDLSIFSGNSGSLDEGSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA
Ga0169709_100075	Ga0169709_1000756	F089054	MLRKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLRLREILQINLSDITIIDIIPLP
Ga0169709_100395	Ga0169709_10039528	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVVWFIVFLYGLVS
Ga0169709_100395	Ga0169709_10039529	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLEHSGTAMEMCNIFKNQDHEFWYRVIKPWFQPERFGITHLWFPSRLSFIFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPYYKKYTPHRIKVLKLALKDLERIKEEYGKD
Ga0169709_100395	Ga0169709_10039532	F044555	MKTITRITINQNGNQILTCKVCKDINNILFMSNEEILELISGLDYIGNIPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0169709_100395	Ga0169709_10039538	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKGDFHNYANTSNTHYEGGKFPSMLTIQLFNLEF
Ga0169709_100655	Ga0169709_10065515	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDSLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLASYILDRKFPIRRQPSAEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH
Ga0169709_103545	Ga0169709_1035452	F089053	MEGPRPDKFAFGVKLERVVDECRPAKGCIRKWLYIFANGQPELSTAEEVNVKSMEAFL
Ga0169709_104743	Ga0169709_1047434	F047125	MDVVLLLMVLGVMLSGFRAADALDHMRKEILRQEGKRRGWWS
Ga0169709_106113	Ga0169709_1061134	F105375	MKKIETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENRCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIESINRISSNIMQITFTV
Ga0169709_106113	Ga0169709_1061136	F064817	MNIKNLFNRFRKRESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0169709_106239	Ga0169709_1062393	F026489	VAKENQKTTSDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF
Ga0169709_106739	Ga0169709_1067393	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNF
Ga0169709_111117	Ga0169709_1111172	F090515	VITCYKVGPKTALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0169709_111791	Ga0169709_1117912	F055715	LTKADEFDKINELLIERTAKKFERTSKNKLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0169709_116148	Ga0169709_1161481	F080163	MKTIKFLQESFETKERFQQEISIKYSYNLDIVESINFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHKNLSFSTKLESKVLDSEIELLQEKLDLIREEICKLIGIDPNLQKKGHEENYIFNLNIDSDNQIGFLLQATEL
Ga0169709_117029	Ga0169709_1170293	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDEPKKRRPFSISKRALAAAS
Ga0169709_117466	Ga0169709_1174661	F076190	VFTAASRVSGRVWSLARITVPNGLKSVRIRGRKTQNNSLYSYFQREPL