3300028483: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36

Overview

Basic Information

• IMG/M Taxon OID: 3300028483
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272180 | Ga0233377
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 240474292
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter gossypii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001230	Metagenome / Metatranscriptome	741	Y
F036964	Metagenome / Metatranscriptome	169	Y
F037916	Metagenome	167	Y
F041521	Metagenome	159	Y
F049900	Metagenome	146	Y
F053537	Metagenome / Metatranscriptome	141	Y
F060691	Metagenome / Metatranscriptome	132	Y
F086140	Metagenome / Metatranscriptome	111	Y
F087402	Metagenome / Metatranscriptome	110	Y
F104679	Metagenome	100	Y
F105520	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233377_1002669	All Organisms → cellular organisms → Bacteria → Proteobacteria	6284
Ga0233377_1004814	All Organisms → cellular organisms → Bacteria	4411
Ga0233377_1004896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	4367
Ga0233377_1005549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4011
Ga0233377_1009537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2808
Ga0233377_1013191	Not Available	2253
Ga0233377_1040211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter gossypii	1038
Ga0233377_1055368	All Organisms → cellular organisms → Bacteria → Proteobacteria	837
Ga0233377_1066544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	738
Ga0233377_1084585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	629

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233377_1002669	Ga0233377_10026691	F086140	MATQTVQQVVDYLKAHPDVARKAMDYVKSHPGDVKNALKEVATERGWDLSKIDTAAITKELGNIVPH
Ga0233377_1004814	Ga0233377_10048142	F001230	VQLTADAAIANAHAWFEVNSGWAPPDEDTLAEWVDDGVCRCPDECLVEPDAWCDHGLASWWLILGALD
Ga0233377_1004896	Ga0233377_10048964	F037916	VSASRAVPSVLYRWRAVAQGGSTVALKRDAQRKPRKDDAEARYKAEIDRLRAVVTEITAENLELKKKI
Ga0233377_1005549	Ga0233377_10055494	F060691	MLMAVEGMDPTLKMIFFAAAVVLFALAAIGYSRGKVSFLAAGLAAFAIPFFWDALVAS
Ga0233377_1006732	Ga0233377_10067323	F104679	MSPILIDRPVVTVSVLRPLLGDSVVVRTASALWRGTLLSCVKDSAWFVVDDVDVVVPLDDLLSVRAA
Ga0233377_1009537	Ga0233377_10095375	F049900	VGLNPFRQHRRSPADIVMVAAALLACVALVAWALFG
Ga0233377_1013191	Ga0233377_10131911	F041521	VDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTNAQTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVKAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR
Ga0233377_1022748	Ga0233377_10227482	F104679	MSPILVDRPVVTVSVLRPLLGDSVVVRTASALWRGTLLSCVKDSAWFIVDDVDVVVPLDDLLSVRAA
Ga0233377_1040211	Ga0233377_10402111	F087402	MARGRVVEFDYYQFVTLLRRATDASQRIDKGDPRWAEYVKTNGINEVAATAIARQKFEGATPVIIAEGKDTDGLYFHSKNEEACL
Ga0233377_1055368	Ga0233377_10553682	F053537	MKYMHKAIWQADGNLVIRGNTRALLFRALDDARAELGRHGDAADPQAVRTLQALQDVLGAYDGALPSAADLLGDPQRERLARNLLKG
Ga0233377_1066544	Ga0233377_10665442	F036964	MINLIDILKIIFPALMVAGALGSFVLNVITNWQNWPVSLQWIGAALLYTALLFRNQ
Ga0233377_1084585	Ga0233377_10845852	F105520	LTSGPPARRHAAAMDAKPKLDLPRTELDFLQRLLLDLQRRLQAGGDCHDEEHVAALELALAILQWDGTVPPPLDAQVGLGAAVESRLGPDAMCALRQWRTERRKALAPVQAPAR