Metagenome / Metatranscriptome Family F086140

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086140
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	72 residues
Representative Sequence	MATQTQQVVDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDTAALTKELGNIVPH
Number of Associated Samples	59
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.16 %
% of genes near scaffold ends (potentially truncated)	34.23 %
% of genes from short scaffolds (< 2000 bps)	81.98 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.252 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (45.045 % of family members)
Environment Ontology (ENVO)	Unclassified (54.955 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.477 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.19% β-sheet: 0.00% Coil/Unstructured: 46.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01544	CorA	6.31
PF12200	DUF3597	3.60
PF13977	TetR_C_6	2.70
PF04248	NTP_transf_9	1.80
PF04226	Transgly_assoc	1.80
PF11373	DUF3175	1.80
PF01717	Meth_synt_2	1.80
PF07589	PEP-CTERM	1.80
PF00689	Cation_ATPase_C	1.80
PF00593	TonB_dep_Rec	0.90
PF03358	FMN_red	0.90
PF14023	DUF4239	0.90
PF14534	DUF4440	0.90
PF00210	Ferritin	0.90
PF00691	OmpA	0.90
PF12840	HTH_20	0.90
PF04519	Bactofilin	0.90
PF13676	TIR_2	0.90
PF07690	MFS_1	0.90
PF09347	DUF1989	0.90
PF00884	Sulfatase	0.90
PF00171	Aldedh	0.90
PF00126	HTH_1	0.90
PF02599	CsrA	0.90
PF03219	TLC	0.90
PF06897	DUF1269	0.90
PF00248	Aldo_ket_red	0.90
PF13581	HATPase_c_2	0.90
PF01966	HD	0.90
PF03055	RPE65	0.90
PF00903	Glyoxalase	0.90
PF03168	LEA_2	0.90
PF08281	Sigma70_r4_2	0.90
PF01979	Amidohydro_1	0.90
PF04357	TamB	0.90
PF00072	Response_reg	0.90
PF13645	YkuD_2	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	6.31
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	1.80
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	1.80
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.80
COG2343	Uncharacterized conserved protein, DUF427 family	Function unknown [S]	1.80
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.90
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.90
COG1551	sRNA-binding carbon storage regulator CsrA	Signal transduction mechanisms [T]	0.90
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.90
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	0.90
COG3202	ATP/ADP translocase	Energy production and conversion [C]	0.90
COG3670	Carotenoid cleavage dioxygenase or a related enzyme	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.90
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.90
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.25 %
Unclassified	root	N/A	47.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.25 %
Unclassified	root	N/A	47.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.25 %
Unclassified	root	N/A	47.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.21 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6.31 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.90 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.80 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.90 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.90 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.90 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.90 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	1.80 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.90 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.90 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.90 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.90 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	0.90 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.90 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.90 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.90 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.90 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Steroidobacter agaridevorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	0.90 %
unclassified Rhodanobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter	0.90 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.90 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.90 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.90 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.75 %
Rhodanobacter sp. RIFOXYA1_FULL_67_6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter → Rhodanobacter sp. RIFOXYA1_FULL_67_6	0.90 %
Steroidobacter agaridevorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	0.90 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.90 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.90 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.90 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_13666281	Not Available	584	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13818857	All Organisms → cellular organisms → Bacteria → Proteobacteria	970	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105373695	Not Available	1290	Open in IMG/M
3300003699\|Ga0003070J53073_1063251	Not Available	520	Open in IMG/M
3300004633\|Ga0066395_10777530	Not Available	573	Open in IMG/M
3300005332\|Ga0066388_101841660	Not Available	1078	Open in IMG/M
3300005332\|Ga0066388_103408094	Not Available	812	Open in IMG/M
3300005332\|Ga0066388_104995405	Not Available	674	Open in IMG/M
3300005542\|Ga0070732_10051292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2384	Open in IMG/M
3300005547\|Ga0070693_100206741	Not Available	1278	Open in IMG/M
3300005618\|Ga0068864_101469945	Not Available	684	Open in IMG/M
3300005764\|Ga0066903_100906953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1596	Open in IMG/M
3300005764\|Ga0066903_106746120	Not Available	597	Open in IMG/M
3300005764\|Ga0066903_106942692	Not Available	587	Open in IMG/M
3300005764\|Ga0066903_108453687	Not Available	525	Open in IMG/M
3300005764\|Ga0066903_108772447	Not Available	513	Open in IMG/M
3300005937\|Ga0081455_10000120	All Organisms → cellular organisms → Bacteria → Proteobacteria	89920	Open in IMG/M
3300006169\|Ga0082029_1171355	Not Available	781	Open in IMG/M
3300009792\|Ga0126374_11734198	Not Available	520	Open in IMG/M
3300009826\|Ga0123355_10704510	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300009826\|Ga0123355_10945195	Not Available	927	Open in IMG/M
3300009826\|Ga0123355_11013293	Not Available	879	Open in IMG/M
3300009826\|Ga0123355_11315415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter → Rhodanobacter sp. RIFOXYA1_FULL_67_6	724	Open in IMG/M
3300010043\|Ga0126380_10563044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	889	Open in IMG/M
3300010046\|Ga0126384_10381500	All Organisms → cellular organisms → Bacteria → Proteobacteria	1184	Open in IMG/M
3300010047\|Ga0126382_11018636	All Organisms → cellular organisms → Bacteria → Proteobacteria	727	Open in IMG/M
3300010047\|Ga0126382_12335278	Not Available	518	Open in IMG/M
3300010048\|Ga0126373_10049891	All Organisms → cellular organisms → Bacteria	3715	Open in IMG/M
3300010048\|Ga0126373_10116183	All Organisms → cellular organisms → Bacteria	2497	Open in IMG/M
3300010048\|Ga0126373_10217127	All Organisms → cellular organisms → Bacteria	1863	Open in IMG/M
3300010048\|Ga0126373_10703573	Not Available	1069	Open in IMG/M
3300010048\|Ga0126373_11364554	Not Available	774	Open in IMG/M
3300010048\|Ga0126373_11399099	Not Available	765	Open in IMG/M
3300010048\|Ga0126373_12770770	Not Available	547	Open in IMG/M
3300010049\|Ga0123356_10165735	All Organisms → cellular organisms → Bacteria	2213	Open in IMG/M
3300010049\|Ga0123356_12238245	Not Available	683	Open in IMG/M
3300010049\|Ga0123356_13162060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	574	Open in IMG/M
3300010359\|Ga0126376_10155247	All Organisms → cellular organisms → Bacteria → Proteobacteria	1839	Open in IMG/M
3300010361\|Ga0126378_10590632	All Organisms → cellular organisms → Bacteria → Proteobacteria	1225	Open in IMG/M
3300010361\|Ga0126378_10707646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1119	Open in IMG/M
3300010361\|Ga0126378_12521175	Not Available	587	Open in IMG/M
3300010362\|Ga0126377_10018889	All Organisms → cellular organisms → Bacteria → Proteobacteria	5629	Open in IMG/M
3300010366\|Ga0126379_11508258	Not Available	778	Open in IMG/M
3300010366\|Ga0126379_12910726	Not Available	573	Open in IMG/M
3300010376\|Ga0126381_100019268	All Organisms → cellular organisms → Bacteria	7945	Open in IMG/M
3300010376\|Ga0126381_100031914	All Organisms → cellular organisms → Bacteria → Proteobacteria	6291	Open in IMG/M
3300010376\|Ga0126381_100035249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6010	Open in IMG/M
3300010376\|Ga0126381_100037308	All Organisms → cellular organisms → Bacteria	5863	Open in IMG/M
3300010376\|Ga0126381_100439773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1826	Open in IMG/M
3300010376\|Ga0126381_100448196	All Organisms → cellular organisms → Bacteria → Proteobacteria	1809	Open in IMG/M
3300010376\|Ga0126381_100606164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1558	Open in IMG/M
3300010376\|Ga0126381_100910660	Not Available	1266	Open in IMG/M
3300010376\|Ga0126381_101626908	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300010376\|Ga0126381_102604179	Not Available	724	Open in IMG/M
3300010376\|Ga0126381_102823437	Not Available	693	Open in IMG/M
3300010376\|Ga0126381_103491043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	618	Open in IMG/M
3300010376\|Ga0126381_104342398	Not Available	549	Open in IMG/M
3300010376\|Ga0126381_104506174	Not Available	538	Open in IMG/M
3300010376\|Ga0126381_104906058	Not Available	514	Open in IMG/M
3300010396\|Ga0134126_10026066	All Organisms → cellular organisms → Bacteria	7415	Open in IMG/M
3300010398\|Ga0126383_11539652	Not Available	754	Open in IMG/M
3300011426\|Ga0151147_1241282	All Organisms → cellular organisms → Bacteria → Proteobacteria	1745	Open in IMG/M
3300012948\|Ga0126375_10896594	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300012971\|Ga0126369_11036227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300012984\|Ga0164309_11587851	Not Available	560	Open in IMG/M
3300016294\|Ga0182041_10209706	All Organisms → cellular organisms → Bacteria → Proteobacteria	1558	Open in IMG/M
3300016319\|Ga0182033_10058164	All Organisms → cellular organisms → Bacteria → Proteobacteria	2660	Open in IMG/M
3300016371\|Ga0182034_10246583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	1407	Open in IMG/M
3300016445\|Ga0182038_11780182	Not Available	556	Open in IMG/M
3300017651\|Ga0182742_1000102	All Organisms → cellular organisms → Bacteria → Proteobacteria	166689	Open in IMG/M
3300017959\|Ga0187779_10227083	Not Available	1176	Open in IMG/M
3300017974\|Ga0187777_10120872	All Organisms → cellular organisms → Bacteria → Proteobacteria	1734	Open in IMG/M
3300018060\|Ga0187765_10068453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1871	Open in IMG/M
3300021377\|Ga0213874_10346896	Not Available	568	Open in IMG/M
3300021560\|Ga0126371_10041630	All Organisms → cellular organisms → Bacteria → Proteobacteria	4354	Open in IMG/M
3300021560\|Ga0126371_10072296	All Organisms → cellular organisms → Bacteria → Proteobacteria	3358	Open in IMG/M
3300021560\|Ga0126371_10252333	All Organisms → cellular organisms → Bacteria	1879	Open in IMG/M
3300021560\|Ga0126371_10253571	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
3300021560\|Ga0126371_10606574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1243	Open in IMG/M
3300021560\|Ga0126371_10679738	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300021560\|Ga0126371_10876170	All Organisms → cellular organisms → Bacteria → Proteobacteria	1042	Open in IMG/M
3300021560\|Ga0126371_11015722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	971	Open in IMG/M
3300021560\|Ga0126371_11543630	Not Available	791	Open in IMG/M
3300021560\|Ga0126371_11583059	Not Available	782	Open in IMG/M
3300021560\|Ga0126371_11692929	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300021560\|Ga0126371_12327724	Not Available	647	Open in IMG/M
3300021560\|Ga0126371_13233917	Not Available	551	Open in IMG/M
3300022903\|Ga0247774_1035120	Not Available	1261	Open in IMG/M
3300027874\|Ga0209465_10263530	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300028483\|Ga0233377_1002669	All Organisms → cellular organisms → Bacteria → Proteobacteria	6284	Open in IMG/M
3300031679\|Ga0318561_10028974	All Organisms → cellular organisms → Bacteria	2657	Open in IMG/M
3300031718\|Ga0307474_10100718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2159	Open in IMG/M
3300031719\|Ga0306917_10793662	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	743	Open in IMG/M
3300031719\|Ga0306917_10875491	Not Available	703	Open in IMG/M
3300031731\|Ga0307405_11053528	Not Available	697	Open in IMG/M
3300031833\|Ga0310917_10630534	Not Available	727	Open in IMG/M
3300031859\|Ga0318527_10478645	Not Available	531	Open in IMG/M
3300031890\|Ga0306925_10199635	All Organisms → cellular organisms → Bacteria → Proteobacteria	2157	Open in IMG/M
3300031897\|Ga0318520_10208824	Not Available	1154	Open in IMG/M
3300031910\|Ga0306923_10425891	All Organisms → cellular organisms → Bacteria → Proteobacteria	1508	Open in IMG/M
3300031912\|Ga0306921_11725193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	676	Open in IMG/M
3300031912\|Ga0306921_12027900	Not Available	612	Open in IMG/M
3300031946\|Ga0310910_11404921	Not Available	537	Open in IMG/M
3300032010\|Ga0318569_10226472	All Organisms → cellular organisms → Bacteria → Proteobacteria	868	Open in IMG/M
3300032052\|Ga0318506_10258186	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300032076\|Ga0306924_12605173	Not Available	504	Open in IMG/M
3300032091\|Ga0318577_10596520	Not Available	525	Open in IMG/M
3300032261\|Ga0306920_100116096	All Organisms → cellular organisms → Bacteria	3972	Open in IMG/M
3300032261\|Ga0306920_102204692	Not Available	766	Open in IMG/M
3300032261\|Ga0306920_102303116	Not Available	746	Open in IMG/M
3300032896\|Ga0335075_10454150	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.29%
Host-Associated	Host-Associated	11.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.39%
Arthropoda	Host-Associated → Arthropoda	6.31%
Plants	Host-Associated → Plants	3.60%
Mammals	Host-Associated → Mammals	1.80%
Aquatic	Environmental → Aquatic	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.49%
Digestive System	Host-Associated → Arthropoda → Digestive System	6.31%
Digestive System	Host-Associated → Mammals → Digestive System	1.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.80%
Freshwater	Environmental → Aquatic → Freshwater	0.90%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.90%
Roots	Host-Associated → Plants → Roots	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.97%
Loam	Environmental → Terrestrial → Soil → Loam	9.91%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	6.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.60%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	1.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.80%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.01%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	6.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.80%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	45.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.21%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.70%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.70%
Elk Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces	1.80%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003699	Groundwater microbial communities from S. Glens Falls, New York, USA - Field experiment aqueous naphthalene treatment rep 1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011426	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017651	Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig MG (version 2)	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022903	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028483	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36	Host-Associated	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_136662811	3300000363	Soil	MAAPTTQQVVDYLKSRPDLAKKAMEFVKSHPNDLKGALKDVASERGWDLSNIDTSALTKELGNITPH*
ICChiseqgaiiFebDRAFT_138188571	3300000363	Soil	MATGTTQQIVDYLKSHPDLARKAMDYVKSHPGDVKSALKDVATERGWDLSQIDTAALTKELSNILPH*
INPhiseqgaiiFebDRAFT_1053736952	3300000364	Soil	MATGTTQQVVDYLKAHPDVAKKAMEYVKSHPGDVKNALKDLATERGWDLSQIDTAALTKELSNVVPH*
Ga0003070J53073_10632511	3300003699	Groundwater	MASGTTQQVVDYLKANPDVAEKAMDYVKSHPGDVKSALKEVASQRGWDLSQIDVAALTKELGDIIPH*
Ga0066395_107775301	3300004633	Tropical Forest Soil	MATQTQQVVEYLKAHPDIAQKAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTASLTKELGN
Ga0066388_1018416601	3300005332	Tropical Forest Soil	MATQTQQIVDYLKAHPDVAQKAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTASLTKELGNIVPH*
Ga0066388_1034080942	3300005332	Tropical Forest Soil	MANQTQQVVDYLKAHPDVAQRAMDYVKSHPGDYKTALKDLASQRGWDLSQIDTATLTKELGNIVPH*
Ga0066388_1049954051	3300005332	Tropical Forest Soil	MATQTQQIVDYLKAHPDVAQKAMDYVKSHPGDVKNALKDLATQRGWDLSQIDTAALSKELGNIIPH*
Ga0070732_100512923	3300005542	Surface Soil	MANQTQQVVDYLKAHPDVAERAMEYMKSHPGDFKTALKDLANQRGWDLSQIDTATVTKELSNIVPH*
Ga0070693_1002067412	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MATGPTQQLVDYLKSHPDVAKKAMDYVKSHPGDVKNAIKDLAAERGWDLLQIDTAALTKELGDIIPH*
Ga0068864_1014699451	3300005618	Switchgrass Rhizosphere	MAAATTQQVVDYLKAHPDIAKKAMDFVKSHPGDLKSAFKDLASERGWDLSQIDLPALQKELGNIVSH*
Ga0066903_1009069532	3300005764	Tropical Forest Soil	MATQTQQVVEYLKAHPDIAQKAMDYVKSHPGDVKTALKDLANQRGWDLSQIDTAALTKELGNIVPH*
Ga0066903_1067461201	3300005764	Tropical Forest Soil	ATQTQQVVDYLKAHPDLAQKAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTAALTKELGNIVPH*
Ga0066903_1069426921	3300005764	Tropical Forest Soil	MATQTVQQVVDYLKAHPDVAQKAMDYVKSHPGDIKTALKDVATERGWDLSQLDTAALTKELGNIVPH*
Ga0066903_1084536871	3300005764	Tropical Forest Soil	MATQIQQVVDYLKAHPDVAQKAMDYVNSHPGDFKTALKDVATQRGWDLSQLDTATLTKELGKIVPH*
Ga0066903_1087724471	3300005764	Tropical Forest Soil	HLGCAVRSGERSHIKEQIMATQTVQQVVDYLKSHPDVAQKAMDYVKSHPGDIKTALKDLATQRGWDLSQLDTAALTKELGNIVPH*
Ga0081455_1000012013	3300005937	Tabebuia Heterophylla Rhizosphere	MATGMTQQVVDYLKSHPDVAKKAMDYVKSHPGDVKNALKDVANERGWDLSQIDTAALTKELGNIIPH*
Ga0082029_11713552	3300006169	Termite Nest	MATTGTTQQVVDYLKSHPDVAKKAMEYVKSHPGDVKNALKDLATERGWDLSQIDTTALTKELGNIIPH*
Ga0126374_117341981	3300009792	Tropical Forest Soil	LDSAVRSGERSLIKEQIMANQTQQVVDYLKAHPDVAQRAMDYMKSHPGDFKTALKDLATQRGWHLSQIDTSPLTKELGDIVPH*
Ga0123355_107045101	3300009826	Termite Gut	LTWAAQFRPGERSLIKEQIMATQTTQQVVDYLKSHPDVARKAMDYVKSHPGDVKTALKDLASQRGWDLSQIDPAAITKELGNIVPH*
Ga0123355_109451951	3300009826	Termite Gut	MLAQALTWAAQFRPGERSLIKEQIMATQTTQQVVDYLKSHPDVARKAMDYVKSHPGDVKTALKDLASQRGWDLSQIDPAAITRELGNIVPH*
Ga0123355_110132932	3300009826	Termite Gut	MATPQVQQVVDYLKSHPDVARKAMDYVKSHPGELKAALKDLATQRGWDLSQIDTAALTKELGNIVPH*
Ga0123355_113154152	3300009826	Termite Gut	MSPAGLAGVECAVAASTRLGSAVRSGERSLIKEQIMATQIQQVVDYLKAHPDIARKAMDYVKSHPGDYKTALKDLATQQRWDLTQIDTAALTKELGKIVPH
Ga0126380_105630442	3300010043	Tropical Forest Soil	LDSAVRSGERSLIKEQIMANQTQQVVDYLKAHPDVAQRAMDYMKSHPGDFKTALKDLATQRGWDLSQIDTATLTKELGDIVPH*
Ga0126384_103815002	3300010046	Tropical Forest Soil	MATQTQQVVDYLKAHPDVARMAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTTTLTKELGNIDPH*
Ga0126382_110186361	3300010047	Tropical Forest Soil	MATGVTQQVVDYLKSHPDVAQKAMDYVKSHPGDVKNALKDLATQRGWDLSQIDTAALSKELGNIIPH*
Ga0126382_123352782	3300010047	Tropical Forest Soil	MANQTQQVVDYLKAHPDVAQRAMDYVKSHPGDFKTALKDLASQRGWDLSQIDTATLTKELGDIVPH
Ga0126373_100498914	3300010048	Tropical Forest Soil	LGSAVRSGERSLIKEQIMATQTQQVVDYLKAHPDMAQRAMDYVKSHPGDVKTALKDLASQRGWDLSQIDTAAITKELGNIVPH*
Ga0126373_101161832	3300010048	Tropical Forest Soil	MPRRGVRVESGVFVAQVIRLSCSARSGERSLREEQIMPTPTTQQVVDYLKSHPDVAKRAMDYVKSHPGDAKAAFKEIASERGWDLSQIDTTALTKELGNIIPH*
Ga0126373_102171272	3300010048	Tropical Forest Soil	LGSAVRSGERSLIKEQIMATQTQQVVDYLKAHPDVAQKAMDYIKSHPGDYKTALKDLASQRGWDLSQIDTATLTKELGNIVPH*
Ga0126373_107035731	3300010048	Tropical Forest Soil	MATQQTVQQVVDYLKAHPDVAQRAMDYMKSHPGDVKTALKDLATQRGWDLSQVDTAALTKEIGNIVPH*
Ga0126373_113645542	3300010048	Tropical Forest Soil	LDSAVRSGERSLIKEQIMANQTQQVVDYLKAHPDVAQRAMDYVKSHPGDYKTALKDLASQRGWDLSQIDTATLTKELGNIVPH*
Ga0126373_113990992	3300010048	Tropical Forest Soil	MATQTQQVVDYLKAHPDIAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDMAALTKELGNIVPH*
Ga0126373_127707701	3300010048	Tropical Forest Soil	SLIKEQIMATQTQQVVDYLKAHPDLAQKAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTAALTKELGNIVPH*
Ga0123356_101657352	3300010049	Termite Gut	MATQTTQQVVDYLKSHPDVARKAMDYVKSHPGDVKTALKDLASQRGWDLSQIDPAAITKELGNIVPH*
Ga0123356_122382451	3300010049	Termite Gut	QTTQQVVDYLKSHPDVARKAMDYVKSHPADVKTALKDLASQRGWDLSQIDPAAITKELGNIVPH*
Ga0123356_131620601	3300010049	Termite Gut	RSLIKEQIMATQIQQVVDYLKAHPDIARKAMDYVKSHPGDYKTALKDLATQQRWDLTQIDTAALTKELGKIVPH*
Ga0126376_101552472	3300010359	Tropical Forest Soil	MANQTQQVVDYLKAHPDVAQRAMDYVKSHPGDYKTALKDLASQRGWDLSQIDTATLTKELGDIVPH*
Ga0126378_105906322	3300010361	Tropical Forest Soil	LGVAIRSGERSRIKEQIMATQTQQIVDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQLDTTALAKELGNIVPH*
Ga0126378_107076461	3300010361	Tropical Forest Soil	LGSAIRSGERSLIKEQIMATQTVQQVVDYLKAHPDVAQKAMDYVKSHPGDIKTALKDLATQRGWDLSQLDTAALTKELGNIVPH*
Ga0126378_125211752	3300010361	Tropical Forest Soil	MANQTQQVVDYLKAHPDVAQRAMDYVKSHPGDYKTALKDLASQRGWDLSQLDTATLTKELGNIVPH*
Ga0126377_100188896	3300010362	Tropical Forest Soil	MATGVTQQVVDYLKSHPDMAQKAMDYVKSHPGDVKNALKDLATQRGWDLSQIDTAALSKELGNIVPH*
Ga0126379_115082582	3300010366	Tropical Forest Soil	MATQIQQVVDYLKAHPDVAQKAMDYVKSHPGDFKTALKDVATQRGWDLSQLDTATLTKELGKIVPH*
Ga0126379_129107261	3300010366	Tropical Forest Soil	QQVVDYLKAHPDVAQRAMDYVKSHPGDFETALEDVATQRGWDLSQIDTAALTRELGNIVPH*
Ga0126381_1000192684	3300010376	Tropical Forest Soil	LGVAIRSGERSRIKEQIMATQTQQIVDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLPQLDTTALAKELGNIVPH*
Ga0126381_1000319141	3300010376	Tropical Forest Soil	GPSGRLGSAVRSGERSLIKEQIMATQTQQVVEYLKAHPDVAQKAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTAALTKELGNIVPH*
Ga0126381_1000352492	3300010376	Tropical Forest Soil	MPHRGVRVESGEFLAQVIHLSCPARSGERSLLEEQIMPTPTTQQVVDYLKSHPDVAKRAMDYVKSHPGDAKAAFKEIASERGWDLSQIDTTTLTKELGNIIPH*
Ga0126381_1000373086	3300010376	Tropical Forest Soil	LGSAVRSGERSLIKEQIMATQTQQVVDFLKAHPDMARKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDTAAITKELGNIVPH*
Ga0126381_1004397733	3300010376	Tropical Forest Soil	LGSSLGGSEAHIKEQIMATQIQQVVDYLRAHPDVAQKAMDYVKSHPGDFKTALKDLATQRGWDLSQIDPTALTKELGNIVPH*
Ga0126381_1004481961	3300010376	Tropical Forest Soil	MVAGSAQGTLLGCAVRSGERSLFKEQIMATQTVQQVVDYLKTHPDVAQKTMEYLKSHPGDVKTPLKDLATQRGWDLSQIDTATLTKELGRIIPH*
Ga0126381_1006061643	3300010376	Tropical Forest Soil	LGSAVRSGERSLIKEQIMAATQTQQVVDYLKAHPDVAKKAMDYVKSHPGDFRTALKDLATQRGWDLSQIDTAALTKELGNIVPH*
Ga0126381_1009106601	3300010376	Tropical Forest Soil	MATETQQVVEYLKAHPDVAQKAMAYVKSHPGDFKTVLKDLATQRGWDLSQIDTAALTKELGNIVPH*
Ga0126381_1016269081	3300010376	Tropical Forest Soil	MATQIQQVVDYLRAHPDVAQKAMDYVKSHPGDFKTALKDLATQRGWDLSQIDPTALTKELGNIVPH*
Ga0126381_1026041791	3300010376	Tropical Forest Soil	MATQIQQVVDYLKAHPDVAKKAMDYVKSHPGDFKTALKDVATQRGWDLSQLDTATLTKELGNIVPH*
Ga0126381_1028234372	3300010376	Tropical Forest Soil	MATQTVQQVVDYLKAHPDVAQKAMDYVKSHPGDIKTALKDLATQRGWDLSQLDTAALTKELGNIVPH*
Ga0126381_1034910431	3300010376	Tropical Forest Soil	ATQTQQVVDYLKAHPDVAQKAMDYIKSHPGDYKTALKDLASQRGWDLSQIDTATLTKELGNIVPH*
Ga0126381_1043423981	3300010376	Tropical Forest Soil	SGERSLIKEQIMATQTQQVVDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDPAALTKELGNIVPH*
Ga0126381_1045061742	3300010376	Tropical Forest Soil	GDRSLIKEQTMATQTQQVVDYLKAHPDVAQKALEYMKSHPGDFKTALKDLATQRGWDLSQIDTASLTKELGNIVPH*
Ga0126381_1049060582	3300010376	Tropical Forest Soil	FKEQIMATQTVQQVVDYLKTHPDVAQKTMEYLKSHPGDVKTPLKDLATQRGWDLSQIDTATLTKELGRIIPH*
Ga0134126_100260663	3300010396	Terrestrial Soil	MATQNVQQVIDYLKTHPDVAQRAMEYLKSHPGDIKTPLRELATQRGWDLSQIDTAALTRELGNIVPH*
Ga0126383_115396522	3300010398	Tropical Forest Soil	LDCAVRSGERSPIKEQIKEQIMATQQTVQQVVDYLKAHPDVAQRAMDYMKSHPGDVKTALKDLATQRGWDLSQVDTAALTKEIGNIVPH*
Ga0151147_12412823	3300011426	Elk Feces	MATQTVQQVVDYLKAHPDVARKAMDYVKSHPGDVKNALKEVATERGWDLSKIDTAAITKELGNIVPH*
Ga0126375_108965941	3300012948	Tropical Forest Soil	LDSAVRSGERSLIKEQIMANQTQQVVDYLKAHPDVAQRAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTTTLTKELGNIDPH*
Ga0126369_110362271	3300012971	Tropical Forest Soil	MATQIQQVVDYLKAHPDVAQKAMDYVNSHPGDFKTALKDVATQRGWDLSQLDTATLTKELGKIVP
Ga0164309_115878511	3300012984	Soil	MAAATTQQVVDYLKSHPDIARKAMDFVKSHPTDIKSAFKDLASERGWDLSQIDLPALARELNNLVPH*
Ga0182041_102097063	3300016294	Soil	MATQTQQVLDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDQAALAKELGNIVPH
Ga0182033_100581644	3300016319	Soil	MATETQQVLDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDTAALTKELGNIVPH
Ga0182034_102465832	3300016371	Soil	MATQTQQVVDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDTAALNKELGNIVPH
Ga0182038_117801822	3300016445	Soil	RSGERSLIKEQIMATQTQQVVDYLKAHPDVAQRAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTTALTKELGNIVPH
Ga0182742_1000102133	3300017651	Compost	MATGTTQQVVEYLKAHPDIAKKAMEYVKTNPGDAKNALKDIASQRGWDLSQIDMSTLTKELSNIVPH
Ga0187779_102270831	3300017959	Tropical Peatland	MATQIQQVVDYLKAHPDVAQRAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTATLTKELSNIVPH
Ga0187777_101208722	3300017974	Tropical Peatland	MATQIQQVVDYLKAHPDVAQRAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTATLTKELSN
Ga0187765_100684532	3300018060	Tropical Peatland	MATQTQQVVDYLKAHPDVAQRAMDYVKSHPGDFKAALKDLATQRGWDLSQIDTATLTKELSNIVPH
Ga0213874_103468961	3300021377	Plant Roots	MATQTQQVVDYLKAHPDMAQKAMDYVKSHPGDVKTALQDLATQRGWDLSQIDTAALTRELSNIVPH
Ga0126371_100416303	3300021560	Tropical Forest Soil	MATQTVQQVVDYLKTHPDVAQKTMEYLKSHPGDVKTPLKDLATQRGWDLSQIDTATLTKELGRIIPH
Ga0126371_100722964	3300021560	Tropical Forest Soil	MATQTQQVVEYLKAHPDIAQKAMDYVKSHPGDVKTALKDLANQRGWDLSQIDTAALTKELGNIVPH
Ga0126371_102523333	3300021560	Tropical Forest Soil	MATQTVQQVVDYLKAHPDVAQKAMDYVKSHPGDIKTALKDLATQRGWDLSQLDTAALTKELGNIVPH
Ga0126371_102535714	3300021560	Tropical Forest Soil	MANQTQQVVDYLKAHPDVAQRAMDYVKSHPGDYKTALKDLASQRGWDLSQIDTATLTKELGNIVPH
Ga0126371_106065741	3300021560	Tropical Forest Soil	MATQIQQVVDYLKAHPDVAQKAMDYVNSHPGDFKTALKDVATQRGWDLSQLDTATLTKELGKIVPH
Ga0126371_106797382	3300021560	Tropical Forest Soil	MATQTQQVVDYLKAHPDVAQKALEYMKSHPGDFKTALKDLANQRGWDLSQIDTAAVTKELGNIVPH
Ga0126371_108761701	3300021560	Tropical Forest Soil	MATQTQQIVDYLKAHPGVAQKAMDYVKSHPGDFKTALKDLAGQRGWDLSQIDTAALTKEL
Ga0126371_110157221	3300021560	Tropical Forest Soil	KEQIKEQIMATQQTVQQVVDYLKAHPDVAQRAMDYMKSHPGDVKTALKDLATQRGWDLSQVDTAALTKEIGNIVPH
Ga0126371_115436301	3300021560	Tropical Forest Soil	KEQIMATQTQQVVDYLKAHPDIAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDMAALTKELGNIVPH
Ga0126371_115830592	3300021560	Tropical Forest Soil	MATQTQQVVDYLKAHPDMAQRAMDYVKSHPGDVKTALKDLASQRGWDLSQIDTAAITKELGNIVPH
Ga0126371_116929292	3300021560	Tropical Forest Soil	MANQTQQIVEYFKAHPDIAQRAMDYVKFHPDDFKTALKDLANQRGWNLSQIDTAKLRK
Ga0126371_123277242	3300021560	Tropical Forest Soil	MATQIQQQVIDYLKAHPDVAQKAMDYVRSHPGDFKTALKDLANQRGWDLSQIDTAALTKELGNIVPH
Ga0126371_132339172	3300021560	Tropical Forest Soil	MPRRGVRVESGVFVAQVIRLSCSARSGERSLREEQIMPTPTTQQVVDYLKSHPDVAKRAMDYVKSHPGDAKAAFKEIASERGWDLSQIDTTALTKELGNIIPH
Ga0247774_10351201	3300022903	Plant Litter	MAATTQQVVDYLKAHPDIAQKAIDFVKSHPGDVKNALKDVATERGWDLSQIDMPTLAKELGNMVPH
Ga0209465_102635302	3300027874	Tropical Forest Soil	MANQTQQVVDYLKAHPDVAQRAMDYVKSHPGDYKTALKDLASQRGWDLSQIDTATLTKEL
Ga0233377_10026691	3300028483	Elk Feces	MATQTVQQVVDYLKAHPDVARKAMDYVKSHPGDVKNALKEVATERGWDLSKIDTAAITKELGNIVPH
Ga0318561_100289743	3300031679	Soil	MATQTQQVLDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDPAALTKELGNIVPH
Ga0307474_101007182	3300031718	Hardwood Forest Soil	MANQTQQVVDYLKAHPDVAERAMEYMKSHPGDFKTALKDLANQRGWDLSQIDTATVTKELSNIVPH
Ga0306917_107936622	3300031719	Soil	QQVVDYLKAHPDVAQKAMDYVKSHPGDFKTALKDLANQRGWDLSQIDTAALTKELGNIVP
Ga0306917_108754912	3300031719	Soil	MATQTQQVVDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDTAALTKELGNIVPH
Ga0307405_110535281	3300031731	Rhizosphere	MATETVQQVVDYLKTHPDVAQRAMDYMKSHPGQLKEALKDVAKERGWDLSKIDTTQLTTEMGKLTPH
Ga0310917_106305342	3300031833	Soil	MATQTQQIVDYLKAHPDVAQKAMDFVKSHPGDVKSALKDLATQRGWDLSQIDQAALAKELGNIVPH
Ga0318527_104786451	3300031859	Soil	YCPKHSLGLRNSSGERSLIKEQIMATETQQVLDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDPAALTKELGNIVPH
Ga0306925_101996355	3300031890	Soil	MATQTQQIVDYLKAHPDVAQKAMDFVKSHPGDVKSALKDLATQRGWDLSQIDQAALAKEL
Ga0318520_102088241	3300031897	Soil	MATETQQVLDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDPAALTKELGNIVPH
Ga0306923_104258913	3300031910	Soil	MATQTQQIVDYLKAHPDVAQKAMDFVKSHPGDVKNALKDLATQRGWDLSQIDQAALAKELGNIVPH
Ga0306921_117251932	3300031912	Soil	MATQTVQQVVDYLKAHPDVAQKAMDYVKEHPGEVKAALQDLAKQRGWDLSQVDTTALTRELGNIVPH
Ga0306921_120279002	3300031912	Soil	IKEQIMATQTQQIVDYLKAHPDVAQKAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTASLTKELGNIVPH
Ga0310910_114049211	3300031946	Soil	ATETQQVLDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDPAALTKELGNIVPH
Ga0318569_102264721	3300032010	Soil	EQIMATQTQQIVDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDPAALTKELGNIVPH
Ga0318506_102581862	3300032052	Soil	LRNSSGERSLIKEQIMATETQQVLDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSKFDPAALTKELGNIVPH
Ga0306924_126051731	3300032076	Soil	SGERSLIKEQIMATETQQVLDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDPAALTKELGNIVPH
Ga0318577_105965201	3300032091	Soil	LGSAIRSGERSLIKEQIMATQTQQVLDYLKAHPDVAQKAMDYVKSHPGDVKTALKDLATQRGWDLSQIDTAALTKELGNIVPH
Ga0306920_1001160961	3300032261	Soil	LAWASQFARGSEATIKEQIMATQTQQIVDYLKAHPDVAQKAMDFVKSHPGDVKSALKDLATQRGWDLSQIDQAALAKELGNIVPH
Ga0306920_1022046921	3300032261	Soil	MANQTQQVVDYLKSHPDVAQKAMDYVKSHPGDFKSALKDLASQRGWDLSQIDTAALTKELGN
Ga0306920_1023031161	3300032261	Soil	MATQTQQVVDYLRAHPDVAQKAMDYVKSHPGDFKTALKDLATQRGWDLSQIDTTALTKELGNIVPH
Ga0335075_104541502	3300032896	Soil	MATGTTQQIVDYLKSHPDVAKKAMDYAKSHAGDMKGALKDVASERGWDLSQIDTGTLTKELGNIISH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086140

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences