Metagenome Family F049900

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F049900
Family Type	Metagenome
Number of Sequences	146
Average Sequence Length	36 residues
Representative Sequence	VGLNPFRQARRSPADYVMVAVAVVVCVALVAWALFG
Number of Associated Samples	102
Number of Associated Scaffolds	146

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	39.16 %
% of genes near scaffold ends (potentially truncated)	8.90 %
% of genes from short scaffolds (< 2000 bps)	75.34 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.068 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.973 % of family members)
Environment Ontology (ENVO)	Unclassified (28.082 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.096 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.94% β-sheet: 0.00% Coil/Unstructured: 64.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 146 Family Scaffolds
PF02021	UPF0102	22.60
PF00378	ECH_1	21.23
PF13541	ChlI	15.07
PF00300	His_Phos_1	10.27
PF01245	Ribosomal_L19	3.42
PF01746	tRNA_m1G_MT	1.37
PF00318	Ribosomal_S2	1.37
PF01654	Cyt_bd_oxida_I	0.68
PF13083	KH_4	0.68
PF13683	rve_3	0.68
PF02881	SRP54_N	0.68
PF00905	Transpeptidase	0.68
PF10502	Peptidase_S26	0.68
PF13442	Cytochrome_CBB3	0.68
PF02899	Phage_int_SAM_1	0.68
PF10611	DUF2469	0.68
PF13365	Trypsin_2	0.68
PF06259	Abhydrolase_8	0.68
PF08659	KR	0.68
PF00886	Ribosomal_S16	0.68
PF01243	Putative_PNPOx	0.68
PF02481	DNA_processg_A	0.68
PF00903	Glyoxalase	0.68
PF07859	Abhydrolase_3	0.68
PF01569	PAP2	0.68
PF00034	Cytochrom_C	0.68
PF05193	Peptidase_M16_C	0.68

COG ID	Name	Functional Category	% Frequency in 146 Family Scaffolds
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	22.60
COG0335	Ribosomal protein L19	Translation, ribosomal structure and biogenesis [J]	3.42
COG0052	Ribosomal protein S2	Translation, ribosomal structure and biogenesis [J]	1.37
COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	Replication, recombination and repair [L]	1.37
COG0228	Ribosomal protein S16	Translation, ribosomal structure and biogenesis [J]	0.68
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.68
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.68
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.68
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.07 %
Unclassified	root	N/A	34.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.07 %
Unclassified	root	N/A	34.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.07 %
Unclassified	root	N/A	34.93 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.79 %
Unclassified	root	N/A	34.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	54.11 %
Unclassified	root	N/A	34.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.93 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	8.90 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.93 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	8.22 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.93 %
Ilumatobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae	1.37 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.68 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.68 %
Microthrixaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae	0.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.68 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.93 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	1.37 %
Candidatus Microthrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix	0.68 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	0.68 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.68 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.93 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	1.37 %
Candidatus Microthrix parvicella	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	0.68 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.68 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.68 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309009\|GPKNP_GG3DY5402IDGRX	Not Available	502	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13193569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300000956\|JGI10216J12902_103871619	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300000956\|JGI10216J12902_108607105	Not Available	687	Open in IMG/M
3300000956\|JGI10216J12902_109594242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	981	Open in IMG/M
3300000956\|JGI10216J12902_110460119	Not Available	609	Open in IMG/M
3300001213\|JGIcombinedJ13530_109575282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	546	Open in IMG/M
3300001431\|F14TB_100151031	Not Available	528	Open in IMG/M
3300005937\|Ga0081455_10006425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12598	Open in IMG/M
3300006038\|Ga0075365_10114307	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300006038\|Ga0075365_10571754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	799	Open in IMG/M
3300006038\|Ga0075365_10670331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300006042\|Ga0075368_10275543	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300006049\|Ga0075417_10320114	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300006051\|Ga0075364_10048930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2755	Open in IMG/M
3300006057\|Ga0075026_100441305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300006172\|Ga0075018_10503667	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300006178\|Ga0075367_10770466	Not Available	612	Open in IMG/M
3300006844\|Ga0075428_100675495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1101	Open in IMG/M
3300006844\|Ga0075428_100969612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	901	Open in IMG/M
3300006845\|Ga0075421_100000510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40752	Open in IMG/M
3300006846\|Ga0075430_100505205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	998	Open in IMG/M
3300006847\|Ga0075431_100484902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1229	Open in IMG/M
3300006852\|Ga0075433_11574290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M
3300006894\|Ga0079215_11490210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300006954\|Ga0079219_12087560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	542	Open in IMG/M
3300007004\|Ga0079218_11410962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	745	Open in IMG/M
3300007517\|Ga0105045_10036593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	4467	Open in IMG/M
3300007521\|Ga0105044_10004413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	19334	Open in IMG/M
3300007521\|Ga0105044_10300834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1519	Open in IMG/M
3300009094\|Ga0111539_10093193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3538	Open in IMG/M
3300009094\|Ga0111539_11920814	Not Available	686	Open in IMG/M
3300009095\|Ga0079224_100153116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	3335	Open in IMG/M
3300009095\|Ga0079224_101244024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1059	Open in IMG/M
3300009095\|Ga0079224_103352763	Not Available	638	Open in IMG/M
3300009100\|Ga0075418_10006060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13649	Open in IMG/M
3300009100\|Ga0075418_10017746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	7866	Open in IMG/M
3300009100\|Ga0075418_12544969	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300009120\|Ga0117941_1082583	Not Available	871	Open in IMG/M
3300009153\|Ga0105094_10050448	Not Available	2305	Open in IMG/M
3300009156\|Ga0111538_10715144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1269	Open in IMG/M
3300009156\|Ga0111538_11235191	Not Available	944	Open in IMG/M
3300009162\|Ga0075423_12494046	Not Available	564	Open in IMG/M
3300009166\|Ga0105100_10578064	Not Available	688	Open in IMG/M
3300009527\|Ga0114942_1478281	Not Available	513	Open in IMG/M
3300009789\|Ga0126307_10000470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25854	Open in IMG/M
3300009789\|Ga0126307_10029412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4217	Open in IMG/M
3300009807\|Ga0105061_1029884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	765	Open in IMG/M
3300009870\|Ga0131092_10102981	All Organisms → cellular organisms → Bacteria	3355	Open in IMG/M
3300010037\|Ga0126304_10897108	Not Available	603	Open in IMG/M
3300010047\|Ga0126382_11820011	Not Available	573	Open in IMG/M
3300010362\|Ga0126377_12510524	Not Available	591	Open in IMG/M
3300010362\|Ga0126377_12940895	Not Available	550	Open in IMG/M
3300010366\|Ga0126379_12453355	Not Available	620	Open in IMG/M
3300012204\|Ga0137374_10791072	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300012355\|Ga0137369_10097902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2415	Open in IMG/M
3300012355\|Ga0137369_10338304	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300012529\|Ga0136630_1080997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1202	Open in IMG/M
3300012668\|Ga0157216_10020249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3482	Open in IMG/M
3300012679\|Ga0136616_10184050	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300012680\|Ga0136612_10098680	Not Available	1479	Open in IMG/M
3300012915\|Ga0157302_10154625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	783	Open in IMG/M
3300012973\|Ga0123351_1190960	Not Available	800	Open in IMG/M
3300012973\|Ga0123351_1233877	Not Available	698	Open in IMG/M
3300014314\|Ga0075316_1047940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	921	Open in IMG/M
3300014326\|Ga0157380_12056620	Not Available	633	Open in IMG/M
3300014326\|Ga0157380_13265615	Not Available	518	Open in IMG/M
3300015163\|Ga0167665_1000315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17012	Open in IMG/M
3300015209\|Ga0167629_1038417	Not Available	1660	Open in IMG/M
3300015209\|Ga0167629_1089383	Not Available	953	Open in IMG/M
3300015371\|Ga0132258_10523255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2969	Open in IMG/M
3300015373\|Ga0132257_104213473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300017960\|Ga0180429_10131211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1677	Open in IMG/M
3300018052\|Ga0184638_1285997	Not Available	560	Open in IMG/M
3300018072\|Ga0184635_10082477	Not Available	1262	Open in IMG/M
3300018422\|Ga0190265_10012770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	6404	Open in IMG/M
3300018422\|Ga0190265_10176204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2123	Open in IMG/M
3300018422\|Ga0190265_11388030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	818	Open in IMG/M
3300018422\|Ga0190265_11803001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	720	Open in IMG/M
3300018422\|Ga0190265_13368912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300018429\|Ga0190272_10279851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1276	Open in IMG/M
3300018432\|Ga0190275_10016456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5622	Open in IMG/M
3300018432\|Ga0190275_10978442	Not Available	917	Open in IMG/M
3300018432\|Ga0190275_11250355	Not Available	818	Open in IMG/M
3300018432\|Ga0190275_12564628	Not Available	587	Open in IMG/M
3300018465\|Ga0190269_10016368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3329	Open in IMG/M
3300018465\|Ga0190269_10215213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1053	Open in IMG/M
3300018466\|Ga0190268_10673849	Not Available	752	Open in IMG/M
3300018469\|Ga0190270_10011834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4989	Open in IMG/M
3300018469\|Ga0190270_10115463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2096	Open in IMG/M
3300018469\|Ga0190270_10683356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1015	Open in IMG/M
3300018469\|Ga0190270_10819934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	939	Open in IMG/M
3300018469\|Ga0190270_10928069	Not Available	891	Open in IMG/M
3300018469\|Ga0190270_11450783	Not Available	734	Open in IMG/M
3300018476\|Ga0190274_11449110	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300018476\|Ga0190274_12196252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	649	Open in IMG/M
3300018476\|Ga0190274_13067495	Not Available	561	Open in IMG/M
3300018481\|Ga0190271_10514354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1309	Open in IMG/M
3300018481\|Ga0190271_10612989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1208	Open in IMG/M
3300018481\|Ga0190271_11989688	Not Available	690	Open in IMG/M
3300018481\|Ga0190271_12107831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	671	Open in IMG/M
3300018481\|Ga0190271_13051081	Not Available	562	Open in IMG/M
3300019361\|Ga0173482_10349306	Not Available	669	Open in IMG/M
3300019377\|Ga0190264_12065538	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300019487\|Ga0187893_10004574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26107	Open in IMG/M
3300020509\|Ga0208594_1000110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27059	Open in IMG/M
3300022213\|Ga0224500_10172561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	801	Open in IMG/M
3300022213\|Ga0224500_10384217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300022309\|Ga0224510_10087330	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1762	Open in IMG/M
3300025791\|Ga0210115_1092544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	616	Open in IMG/M
3300026535\|Ga0256867_10121673	Not Available	994	Open in IMG/M
3300027379\|Ga0209842_1029130	Not Available	1045	Open in IMG/M
3300027823\|Ga0209490_10104424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2054	Open in IMG/M
3300027831\|Ga0209797_10035449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2254	Open in IMG/M
3300027866\|Ga0209813_10323917	Not Available	604	Open in IMG/M
3300027880\|Ga0209481_10018202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	3082	Open in IMG/M
3300027897\|Ga0209254_10620967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	758	Open in IMG/M
3300027909\|Ga0209382_10039275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5675	Open in IMG/M
(restricted) 3300027997\|Ga0255057_10521563	Not Available	577	Open in IMG/M
3300028007\|Ga0247718_1173790	Not Available	507	Open in IMG/M
3300028483\|Ga0233377_1009537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2808	Open in IMG/M
3300028590\|Ga0247823_10637713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	802	Open in IMG/M
3300028741\|Ga0302256_10060127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	978	Open in IMG/M
3300028812\|Ga0247825_10376488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1000	Open in IMG/M
3300030336\|Ga0247826_10187410	Not Available	1403	Open in IMG/M
3300030496\|Ga0268240_10071213	Not Available	778	Open in IMG/M
3300031228\|Ga0299914_10091169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2664	Open in IMG/M
3300031228\|Ga0299914_10201746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1764	Open in IMG/M
3300031229\|Ga0299913_10011455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	7920	Open in IMG/M
3300031229\|Ga0299913_10656750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1028	Open in IMG/M
3300031229\|Ga0299913_10698586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	992	Open in IMG/M
3300031455\|Ga0307505_10041286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2061	Open in IMG/M
3300031548\|Ga0307408_101566595	Not Available	625	Open in IMG/M
3300031548\|Ga0307408_101897251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300031726\|Ga0302321_102998020	Not Available	551	Open in IMG/M
3300031727\|Ga0316576_10550946	Not Available	845	Open in IMG/M
3300031903\|Ga0307407_10785747	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300031965\|Ga0326597_10288627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1872	Open in IMG/M
3300033407\|Ga0214472_11699433	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300033416\|Ga0316622_100660621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	1207	Open in IMG/M
3300033417\|Ga0214471_10213584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1582	Open in IMG/M
3300033417\|Ga0214471_11148112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300034148\|Ga0364927_0045197	Not Available	1137	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.97%
Host-Associated	Host-Associated	24.66%
Engineered	Engineered	1.37%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.16%
Plants	Host-Associated → Plants	22.60%
Aquatic	Environmental → Aquatic	17.81%
Mammals	Host-Associated → Mammals	2.05%
Wastewater	Engineered → Wastewater	0.68%
Bioreactor	Engineered → Bioreactor	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.75%
Freshwater	Environmental → Aquatic → Freshwater	9.59%
Roots	Host-Associated → Plants → Roots	4.79%
Marine	Environmental → Aquatic → Marine	4.11%
Sediment	Environmental → Aquatic → Sediment	3.42%
Digestive System	Host-Associated → Mammals → Digestive System	2.05%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.05%
Peat	Environmental → Terrestrial → Peat	1.37%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.68%
Cave	Environmental → Terrestrial → Cave	0.68%
Floodplain	Environmental → Terrestrial → Floodplain	0.68%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.68%
Anaerobic	Engineered → Bioreactor → Anaerobic	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.75%
Ice	Environmental → Aquatic → Freshwater → Ice	4.79%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.42%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.05%
Sediment	Environmental → Aquatic → Marine → Sediment	2.05%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	2.05%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.37%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.37%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.37%
Sand	Environmental → Terrestrial → Soil → Sand	1.37%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.37%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.37%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.68%
Gulf	Environmental → Aquatic → Marine → Gulf	0.68%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.68%
Loam	Environmental → Terrestrial → Soil → Loam	0.68%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.68%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.68%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.68%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.75%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	5.48%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.42%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	2.74%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	2.05%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	2.05%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.05%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.05%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	2.05%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.37%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.37%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.37%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.37%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.37%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.37%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.68%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.68%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.68%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.68%
Unclassified	Environmental → Aquatic → Marine → Gulf → Unclassified	0.68%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.68%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.68%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.68%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.68%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	5.48%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.11%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	2.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.74%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.74%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	2.05%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	2.05%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.05%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	2.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.05%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.37%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.37%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.37%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.37%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.37%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.37%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal	1.37%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.37%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.37%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.68%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.68%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.68%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.68%
Seawater	Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater	0.68%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.68%
Lake Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.68%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.68%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.68%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.68%
Elk Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces	0.68%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.68%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.68%
Anaerobic Biogas Reactor	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007517	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-02 (megahit assembly)	Environmental	Open in IMG/M
3300007521	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009120	Lake sediment microbial communities from Tanners Lake, St. Paul, MN	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009527	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek	Environmental	Open in IMG/M
3300009770	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A C12 SIP DNA	Engineered	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012529	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06)	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012679	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ299 (21.06)	Environmental	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012973	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Day 36 Metagenome	Host-Associated	Open in IMG/M
3300014314	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015163	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1b, glacier snout)	Environmental	Open in IMG/M
3300015209	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3B, Proglacial river margin, by glacier terminus)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017960	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_1 metaG	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020509	Freshwater microbial communities from Lake Mendota, WI - 14SEP2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027823	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-06 (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027997 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_6	Environmental	Open in IMG/M
3300028007	Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-1-E_D	Environmental	Open in IMG/M
3300028483	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36	Host-Associated	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028741	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_4	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031727	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKNP_01662660	2070309009	Soil	MGLNPFGQQRRSAADYVMVVAAVVACILLVAWALFG
ICChiseqgaiiFebDRAFT_131935692	3300000363	Soil	VGLNPFRQQRRSPADILMVVGALVVCVALVAWALFA*
JGI10216J12902_1038716192	3300000956	Soil	MGLNPFRQIHRSPADYVMVVVAVLVCVALVAWAVLG*
JGI10216J12902_1086071052	3300000956	Soil	LNPFRETHRSPADYLMVVVAVLICIALVAWALFG*
JGI10216J12902_1095942422	3300000956	Soil	MLVAVGLNPFRQAHRSPADYVMVAVAVLVCVALVAWALFG*
JGI10216J12902_1104601192	3300000956	Soil	VGLNPFRQARRSPADYLMVAVAVLVCIALVAWALFG*
JGIcombinedJ13530_1095752821	3300001213	Wetland	PDRARILDVVGFNPFRQQRRSFADYAMVGGALIVLVLLVLWAFFG*
F14TB_1001510311	3300001431	Soil	VGFNPFRKARRSSADYLMVATALVVCALLVIWALFG*
Ga0081455_100064256	3300005937	Tabebuia Heterophylla Rhizosphere	VGFNPFRQSRRSPADYVMVAAALVVCAALVIWALVG*
Ga0075365_101143073	3300006038	Populus Endosphere	MNPFRPHRRSPADYVMVVAALLVVAALIAWAFLG*
Ga0075365_105717542	3300006038	Populus Endosphere	MNPFRQHRRSPADYVMVAVAFAVIVALVLWAFFG*
Ga0075365_106703312	3300006038	Populus Endosphere	VGLNPFRQARRSPADYVMVAVAVVVCVALVAWALFG*
Ga0075368_102755432	3300006042	Populus Endosphere	MNPFRQHRRSPADYVMVAVAGVVILALVLWAFFG*
Ga0075417_103201142	3300006049	Populus Rhizosphere	VGLNPFRQQRRSPADIVMVAGAIVVVVLLVAWALFG*
Ga0075364_100489303	3300006051	Populus Endosphere	MNPFRQHRRSPADYVMVAAALLILAALVAWAFFG*
Ga0075026_1004413052	3300006057	Watersheds	MNPFRPHRRSPADFVMVGAALLVVIGLVVWAIHG*
Ga0075018_105036672	3300006172	Watersheds	MGMNPFRPPRRTPADYVMVAAALVVLAALVFWAVHG*
Ga0075367_107704662	3300006178	Populus Endosphere	MNPFRQHRRSPADYVMVAVAAVVILALVLWAFFG*
Ga0075428_1006754952	3300006844	Populus Rhizosphere	VGFNPFRQSRRSPADYVMVAAALVVCAALVIWALAG*
Ga0075428_1009696124	3300006844	Populus Rhizosphere	DTDGVGLNPFRQQRRSPADIVMVAGAIVVVVLLVAWALFG*
Ga0075421_1000005108	3300006845	Populus Rhizosphere	VGFNPFRQQRRSYADYVMVAAAIVICIVLVAWALFG*
Ga0075430_1005052052	3300006846	Populus Rhizosphere	VGLNPFRQQRRSPADIVMVAGAIVVVILLVAWALFG*
Ga0075431_1004849022	3300006847	Populus Rhizosphere	VGFNPFRQTRRSSADYVIVAAALVVCAALVIWALAG*
Ga0075433_115742902	3300006852	Populus Rhizosphere	MDVGLNPFRQHRRSPADILLVAAAVAVCVALVAWALFA*
Ga0079215_114902103	3300006894	Agricultural Soil	MNAVGFNPFRQQRRSSADYLMVAVAMVIIVALVAWGLFG*
Ga0079219_120875601	3300006954	Agricultural Soil	MGLNPYRPHRRSPADYALVAGAVLVCVLLVAWALFG*
Ga0079218_114109622	3300007004	Agricultural Soil	MGLNPFRQAHRSPADYVMVAVAILVCVALVAWAFFG*
Ga0105045_100365937	3300007517	Freshwater	MNPFRPHRRSPADVVMVVAAVLVCAALVAWALFG*
Ga0105044_100044136	3300007521	Freshwater	MNPFRQHRRSPADYVMVAAAFVVLAALVAWAFFG*
Ga0105044_103008342	3300007521	Freshwater	MGLNPYRKHHRSPVDYVMVAGAVLACLALVLWAFLG*
Ga0111539_100931933	3300009094	Populus Rhizosphere	VGLNPFRQHRRSPADILMVAVALVVCLALVLWALLG*
Ga0111539_119208142	3300009094	Populus Rhizosphere	MGFNPFRAQRRSTGDYVMVAVAVVVCVLLVAWAVLG*
Ga0079224_1001531164	3300009095	Agricultural Soil	MGRTILTGVGFNPFRPRRNSYADYLMVASALVVSAALVAWALFG*
Ga0079224_1012440242	3300009095	Agricultural Soil	MGLNPFRPHRRSYGDLAVMAGALIVTAALVAWALLG*
Ga0079224_1033527632	3300009095	Agricultural Soil	VGLNPFRQHRRSPADIAMVVGALLACAVLVAWALFG*
Ga0075418_100060604	3300009100	Populus Rhizosphere	VGFNPFRKTRRSSADYLMVAAALAVCALLVIWALFG*
Ga0075418_100177463	3300009100	Populus Rhizosphere	VGFNPFRQTRRSPADYVMVAVALVVCAALVIWALAG*
Ga0075418_125449692	3300009100	Populus Rhizosphere	VGLNPFRQQRRSPVDYVLVAVALAVCVLLVAWAAFGL*
Ga0117941_10825832	3300009120	Lake Sediment	MGLNPYRQRRRSPADYLMVAAAVVACLLLVLWAVLG*
Ga0105094_100504484	3300009153	Freshwater Sediment	VGLNPFRQQRRSPADIVMLVAALAVCVALVAWALFA*
Ga0111538_107151441	3300009156	Populus Rhizosphere	TDGVGLNPFRQQRRSPADIVMVAGAIVVVILLVAWALFG*
Ga0111538_112351911	3300009156	Populus Rhizosphere	VGLNPFRQHRRSPADVLLVAAALLVCLALVAWALFG*
Ga0075423_124940462	3300009162	Populus Rhizosphere	VGLNPFRQHRRSPADILMVVGALVVCVALVAWALFA*
Ga0105100_105780641	3300009166	Freshwater Sediment	MGLNPFGPRRRSAADYLMVAGAVIACAVLVLWAFLG*
Ga0114942_14782812	3300009527	Groundwater	MNPFRQHRRSPADYVMVAAALLILLALVAWAFFG*
Ga0123332_11229912	3300009770	Anaerobic Biogas Reactor	MGFNPHRPHRNSIADYLMVGAALAVVVLLVLWAVFG*
Ga0126307_1000047021	3300009789	Serpentine Soil	VGLNPFRQHRRSPADYLMVAVAVAVCLALVLWAALG*
Ga0126307_100294122	3300009789	Serpentine Soil	VGLNPFRQHRRSPADYLMVAGAVVVCLALVLWAFFG*
Ga0105061_10298842	3300009807	Groundwater Sand	VGFNPFRQTRRSPADYVMVAAALVACAALVIWALAG*
Ga0131092_101029814	3300009870	Activated Sludge	VGFNPFRQQRRSFADYAMVGGALIVLTLLVLWALFG*
Ga0126304_108971082	3300010037	Serpentine Soil	MGFNPHRPHRRSAADYVMVAAAFVVCIGLVLWAALG*
Ga0126382_118200112	3300010047	Tropical Forest Soil	VGLNPFRQHRRSPGDILMVVAALVVCVALVLWALLG*
Ga0126377_125105242	3300010362	Tropical Forest Soil	VGLNPFRQHRRSPADILLVAAAVAVCVALVAWALFG*
Ga0126377_129408952	3300010362	Tropical Forest Soil	VGLNPFRQHRRSPADILMLAAALVVCVLLVAWALFG*
Ga0126379_124533552	3300010366	Tropical Forest Soil	VGLNPFRQHRRSPADILLVAAAVAVCVALVAWALFA*
Ga0137374_107910722	3300012204	Vadose Zone Soil	VGFNPFHQQRRSNADYVMVAAALVVCIALVAWALFG*
Ga0137369_100979026	3300012355	Vadose Zone Soil	VGFNPFARHRRSAADYVMVAAALVLVVLLVAWALFG*
Ga0137369_103383042	3300012355	Vadose Zone Soil	MGFNPFRQHRRSYADYVLVGLAVVVCVALVLWALFG*
Ga0136630_10809971	3300012529	Polar Desert Sand	MGLNPFRLHRRTPADYLMVVGAVVVSLALVLWAFLG*
Ga0157216_100202493	3300012668	Glacier Forefield Soil	MGLNPFRQHRRSAADYLMVAGAVLACVLLVVWALFG*
Ga0136616_101840501	3300012679	Polar Desert Sand	VGLNPFRQHRRSPIDYVLVVAALLVCVLLVYWAAFGF*
Ga0136612_100986802	3300012680	Polar Desert Sand	VGLNPFRQQRRTSVDYVMVAVALTVCLLLVAWAFFG*
Ga0157302_101546252	3300012915	Soil	MLGQMGLNPFRQIHRSPFDYVMVALAVLVCVALVAWAFLG*
Ga0123351_11909602	3300012973	Fecal	VGLNPFRQHRRSPADIVMVAAALLACVALVAWALFG*
Ga0123351_12338772	3300012973	Fecal	MNPFRPHRRSPADYVMVAAAILVCLALVGWALFG*
Ga0075316_10479402	3300014314	Natural And Restored Wetlands	VGLNPFRQQRRRPSDYVLVAGAMLLTLLLVAWGIGLIP*
Ga0157380_120566202	3300014326	Switchgrass Rhizosphere	MNPFRQHRRSPADYVMVAAALLILVALVAWAFFG*
Ga0157380_132656152	3300014326	Switchgrass Rhizosphere	MNPFRQHRRSPADYVMVAAAFVVLVALVAWAFFG*
Ga0167665_100031516	3300015163	Glacier Forefield Soil	MGLNPFRQHRRSPADYLMVAGAVLACVLLVVWALFG*
Ga0167629_10384173	3300015209	Glacier Forefield Soil	VGLNPFRQQRRSPADYVLVAAAVVVTLLLVLWALLG*
Ga0167629_10893832	3300015209	Glacier Forefield Soil	VGLNPFRQQRRSPADYVLVAAAIVVTLLLVLWALLG*
Ga0132258_105232552	3300015371	Arabidopsis Rhizosphere	VGLNPFRQTHRSPADYLMVVVAVLACVALVAWAILG*
Ga0132257_1042134732	3300015373	Arabidopsis Rhizosphere	MRMGFNPFRHQRRSPADYVMVVAAFVIVALLVVWALFG*
Ga0180429_101312113	3300017960	Hypersaline Lake Sediment	MGFNPHRTHRRSPADYVMVAGAFVVVILLVAWALLG
Ga0184638_12859972	3300018052	Groundwater Sediment	MGFNPFHKRRPSYADYLLVGLAVAVCLALVLWALFG
Ga0184635_100824772	3300018072	Groundwater Sediment	VGFNPFRQTRRSPADYVMVAAALVACAALVIWALAG
Ga0190265_100127704	3300018422	Soil	MGLNPYRPHRRSPADIVMVVCALLACLALVLWALFG
Ga0190265_101762042	3300018422	Soil	VGLNPFRHARHSPADYVMVAVAVLVCVALVVWAFVG
Ga0190265_113880302	3300018422	Soil	MGLNPFRQQRRSSADYVMVAMAVLVCIALVVWAFAG
Ga0190265_118030012	3300018422	Soil	VGLNPFRQHRRSPADIAMVVGALLVCVALVAWAIFA
Ga0190265_133689121	3300018422	Soil	MGLNPFRQAHRSPADYVMVAVAILVCVALVAWALFG
Ga0190272_102798512	3300018429	Soil	VGLNPFRQQRRSPVDYVLVAIALVVCVLLVAWAAFGL
Ga0190275_100164566	3300018432	Soil	MGLNPFRQQRRSAADYLMVAGAIVVCILLVAWALFG
Ga0190275_109784422	3300018432	Soil	VGLNPFRQARRSPVDYLMVAGAVLVCVALVVWAFLG
Ga0190275_112503551	3300018432	Soil	MGLNPYRPHRTSAADVVMVVGALLACLALVLWALFG
Ga0190275_125646282	3300018432	Soil	MGLNPFRQQRRSVVDYLMVAGAVVVCILLVAWALLG
Ga0190269_100163683	3300018465	Soil	MGLNPFRQQRRSAADYLMVAGAVLACVLLVLWALLG
Ga0190269_102152134	3300018465	Soil	MGLNPFRQHRRSAADYLMVAGAVVACLLLVLWALFG
Ga0190268_106738492	3300018466	Soil	VGLNPFRQHRRSPADILMVAVALAVCVALVAWALLG
Ga0190270_100118344	3300018469	Soil	VGLNPFRQHRRSPADVLMVAVALLVCAALVAWALFA
Ga0190270_101154632	3300018469	Soil	VGFNPFRQTRRSPADYLMVGAALIVCAALVIWALAG
Ga0190270_106833562	3300018469	Soil	VTVGLNPFRQTHRSPADYLMVAVAVLVCVALVAWALFG
Ga0190270_108199343	3300018469	Soil	APMGMNPFRQHRRSPADYVMVAAALLILVALVAWAFFG
Ga0190270_109280692	3300018469	Soil	MGFNPFRAQRRSTGDYVMVAVAVVVCVLLVAWAVLG
Ga0190270_114507832	3300018469	Soil	VGLNPFRQAHRSPADYLMVAVAVLVCVALVAWAVFG
Ga0190274_114491102	3300018476	Soil	VGLNPFRQHRRSPADILMVAVALLVCVALVAWALFA
Ga0190274_121962522	3300018476	Soil	MGLNPFRQVHRSPLDYVMVALAVLVCLALVAWAFFG
Ga0190274_130674952	3300018476	Soil	MGLNPFREVHRSPLDYVMVALAVLVCLALVAWAFFG
Ga0190271_105143543	3300018481	Soil	MGLNPFGTRTHGWADYLMVAAAVVACLALVAWALLG
Ga0190271_106129893	3300018481	Soil	MGLNPFGTRTHGWADYLMVAGAVVACLALVAWALLG
Ga0190271_119896882	3300018481	Soil	MGLNPFRQVHRAPADYVIAALAVLVTVALVAWAFLG
Ga0190271_121078311	3300018481	Soil	MLGRMGLNPFRQAHRAPADYVIAAVAILVCLALVAWAFFG
Ga0190271_130510812	3300018481	Soil	AGRMGLNPFREVHRSPADYVIAALAILVIVALVAWAMFG
Ga0173482_103493062	3300019361	Soil	MLGRMGLNPFREIHRSPFDYVMVALAVLVCVALVAWAFLG
Ga0190264_120655382	3300019377	Soil	MGLNPFRQHRRSPADYLMVAGAVVVCLALVLWAFFG
Ga0187893_1000457414	3300019487	Microbial Mat On Rocks	VGLNPFRQHRRSPIDYLLVATTLVVVAALVAWALFG
Ga0208594_100011026	3300020509	Freshwater	MGFNPHRVHRRSAADYFMVAGAFIVVAALVVWALVG
Ga0224500_101725613	3300022213	Sediment	GLNPYRKQRRSPADYVMVAGAVMACAALVLWALLG
Ga0224500_103842172	3300022213	Sediment	MGLNPYRKQRRSPAYYVMVAGAVMACAALVLWALLG
Ga0224510_100873302	3300022309	Sediment	MGLNPYRKQRRSPADYVMVAGAVMACAALVLWALLG
Ga0210115_10925442	3300025791	Natural And Restored Wetlands	VGLNPFRQQRRRPSDYVLVAGAMLLTLLLVAWGIGLIP
Ga0256867_101216732	3300026535	Soil	VGLNPFRQHRRSSADILMVAGALVVCAALVAWALLG
Ga0209842_10291301	3300027379	Groundwater Sand	VGFNPFRQTRRPPADYVMVAAALVACAALVIWALAG
Ga0256866_10891681	3300027650	Soil	VARRGHDTEPVGFNPFRQTRRSPADYVMVAAALVVCAAL
Ga0209490_101044243	3300027823	Freshwater	MGLNPYRKHHRSPVDYVMVAGAVLACLALVLWAFLG
Ga0209797_100354492	3300027831	Wetland Sediment	VGLNPFRQHRRTAADYLMVAAALVVCGLLVLWAFLG
Ga0209813_103239171	3300027866	Populus Endosphere	AGYVADTEAMGMNPFRQHRRSPADYVMVAVAGVVILALVLWAFFG
Ga0209481_100182026	3300027880	Populus Rhizosphere	VGFNPFRQQRRSYADYVMVAAAIVICIVLVAWALFG
Ga0209254_106209672	3300027897	Freshwater Lake Sediment	MGLNPFHQHRRSAADYLMVAGAVVVCLVLVAWALLG
Ga0209253_105910053	3300027900	Freshwater Lake Sediment	GAVGFNPQRPKRRSSADYLMVGAAAIVVVGLVVWALFG
Ga0209382_100392752	3300027909	Populus Rhizosphere	VGFNPFRKARRSSADYLMVAAALAVCALLVIWALFG
(restricted) Ga0255057_105215631	3300027997	Seawater	RILGAVGFNPFRAQSRSLGDYVMVASALVVTALLVAWALLG
Ga0247718_11737902	3300028007	Soil	MGLNPFREQRRSAADYLLVAAAVAACVLLVLWALFG
Ga0233377_10095375	3300028483	Elk Feces	VGLNPFRQHRRSPADIVMVAAALLACVALVAWALFG
Ga0247823_106377132	3300028590	Soil	MGLNPFRQGRRGAADYLMVAGAVLVCILLVAWAFLG
Ga0302256_100601272	3300028741	Fen	MGLNPFRPQHHSALDYLMVAAALLASAALVAWAFLG
Ga0247825_103764881	3300028812	Soil	DTGAMGLNPFRQGRRGAADYLMVAGAVLVCILLVAWAFLG
Ga0247826_101874103	3300030336	Soil	MGFNPFRAQRRSTGDYVMVAVAVLVCVLLVAWAVLG
Ga0268240_100712131	3300030496	Soil	VGLNPFRQHCRSTADYVLVAAALAVCLALVLWAALG
Ga0299914_100911691	3300031228	Soil	TDHVGLNPFHQHRRSPADIAMVVGALVVCAALVTWALLG
Ga0299914_102017464	3300031228	Soil	MGLNPFRQQRRSPVDYLMVAGAVLACVLLVVWAMFG
Ga0299913_100114551	3300031229	Soil	VGNTAAVGFNPFRQRRSTADYLMVAVALAICVALVVWAAAG
Ga0299913_106567502	3300031229	Soil	MGLNPFRPNHRSYGDYVMVAGALVVCALLVVWALVG
Ga0299913_106985862	3300031229	Soil	MGLNPFRQQRRSAVDYVMVAGAVLACVLLVLWAMFG
Ga0307505_100412864	3300031455	Soil	MNPFRPHRSSPVADALFVGAALVVCAALVLWAFFG
Ga0307408_1015665952	3300031548	Rhizosphere	MGMNPFRQHRRSPADYVMVAAALLILVALVAWAFFG
Ga0307408_1018972512	3300031548	Rhizosphere	VGLNPFRQQRRSPVDYVLVAVALAVCVLLVAWAAFGL
Ga0302321_1029980201	3300031726	Fen	MGMNPFRQHRRSPADYVMVGAALVVLAGLVFWAIHG
Ga0316576_105509462	3300031727	Rhizosphere	GFNPHRKHRRSPADILFVVGALAVAVGLLAWALFG
Ga0307407_107857473	3300031903	Rhizosphere	VGLNPFRQQRRSPVDYVLVAVALVVCVLLVAWAAFGL
Ga0326597_102886271	3300031965	Soil	MGLNPFRQQRRSPADYVMVAAAVAACVLLVLWALFG
Ga0214472_116994332	3300033407	Soil	EPMGLNPFRQQRRSPADYLMVVGAVLACILLVLWALLG
Ga0316622_1006606212	3300033416	Soil	MGMNPFRQHRRSPADYLMVVAALVICALLVGWALFGG
Ga0214471_102135844	3300033417	Soil	MGLNPFRQQRHSAADYLMVAAAVLACIVLVLWAVLG
Ga0214471_111481122	3300033417	Soil	MGLNPFRQQRRSPVDYVMVAGAVLACVLLVLWAMFG
Ga0364927_0045197_417_527	3300034148	Sediment	VGFNPFARHRRSTADYVMVAAAFAVVVLLLAWALFG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters