3300028326: Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 5 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300028326
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046201 | Gp0057198 | Ga0268263
• Sample Name: Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 5 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 272182019
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lawrence Berkeley National Laboratory, California, USA
• Coordinates
  • Lat. (^o): 37.8754404
  • Long. (^o): -122.2477251
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010231	Metagenome	306	Y
F014318	Metagenome / Metatranscriptome	264	Y
F069434	Metagenome / Metatranscriptome	124	Y
F078103	Metagenome / Metatranscriptome	116	Y
F083634	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0268263_1000217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	130238
Ga0268263_1000263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	106998
Ga0268263_1000350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	85721
Ga0268263_1000766	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	38424
Ga0268263_1002186	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	13401
Ga0268263_1015438	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2058
Ga0268263_1029796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1141
Ga0268263_1031331	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1095

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0268263_1000217	Ga0268263_10002175	F069434	MKRIFDKATCWNIFDHAKDPERYWALQHAGLHDAARTAAIFLTLRHPLRMIPVIIACARY
Ga0268263_1000263	Ga0268263_10002635	F069434	MKRIFDKTTCWNIFDHAKDPECYWALQHAGLHDAARTAAIYLTLRHPLRMIPVIIACARS
Ga0268263_1000350	Ga0268263_100035087	F069434	MKHIFDRTTCWNIFDHAEDPERYWALQRAGLHEKARKAAIRLTLKHPLRMISVIIACARC
Ga0268263_1000766	Ga0268263_100076612	F078103	MKVEGIKVLSLVMSIAMVAVIVLSLAGGVGLGYAIIFGILNAFDRSRQLIKAAPTQVLTNSASSR
Ga0268263_1002186	Ga0268263_10021861	F010231	NTRLWALAGDVHSGGFAPAFTLSFHDSECSRKPPNAHSLGR
Ga0268263_1015438	Ga0268263_10154381	F010231	NTRLCAMAADVQFGGFAPAFTLSFYDSECSRNPPNAHSLGR
Ga0268263_1029796	Ga0268263_10297961	F014318	MGHTGESMSDLYDKIKEDVAFRKQWAEKCGFGFELPSIVPNVPKTRAKSKSMKAA
Ga0268263_1031331	Ga0268263_10313311	F083634	MDGGANPQINLDHIRIGGRICHLARKLIVTVEYEDDRLTFSNEEFGLVVSAETLEEGIAGLSGELAVLWEVYVGADPANLTADALRLRNNLTTLVPAGVSP