3300027628: Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027628
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104148 | Ga0209463
• Sample Name: Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 420874915
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000680	Metagenome / Metatranscriptome	939	Y
F006781	Metagenome	364	Y
F036315	Metagenome / Metatranscriptome	170	Y
F036316	Metagenome	170	Y
F039456	Metagenome	163	Y
F057856	Metagenome	135	Y
F075601	Metagenome	118	Y
F099823	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209463_1033492	Not Available	1559
Ga0209463_1048126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1212
Ga0209463_1067286	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	963
Ga0209463_1090892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	785
Ga0209463_1100301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735
Ga0209463_1118688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658
Ga0209463_1168249	Not Available	526
Ga0209463_1178803	Not Available	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209463_1033492	Ga0209463_10334921	F057856	MGLAQLNYKISNQRPNKNLDYFHVQILAILPTHTRQLTSPLSISQLPINPDESSLKHFIEHLVGVRENSKF
Ga0209463_1048126	Ga0209463_10481262	F036315	MARRTLIITAICAVLVGTGVAHAQTGEQLSSSWAQANVCNATQLGARAQLAGDGTKSDLSVRFTAQWLSPNGWEPLGGAATSPWQSAGTAEYTWSQAGWTFSISVPPGHQYQLRAVAELRWSGETVRSETHVTGTCTIGA
Ga0209463_1067286	Ga0209463_10672862	F039456	MHCGNTTFAYSNEFNDYMKVDGAESEDIFDYLFDIRAGKFLSEEGKKYLLELFEEYDPEHLNQINEDFDEYLDNDDLENIIGDEGVQNLNNDD
Ga0209463_1090892	Ga0209463_10908921	F000680	MLALAAVPVIAQVTQEDEQEGESGDLDQEFNITGGGDNSNQCVGIQGVGNTGNTQNLIDVIQYGAEEGGDFEFDEGGSTIDVSPENSTECTSEVNQAASASG
Ga0209463_1100301	Ga0209463_11003011	F036316	SRLELATAACFVLGAGLLFPFDSTFTIIPGVLLLLAFVVCGVFVLASPERLGRDEP
Ga0209463_1118688	Ga0209463_11186882	F099823	MTSRAVTITLELRLAGDELDGRATDGSGDDRPFTGWLGLLVAIDHLLSAAPEAQET
Ga0209463_1168249	Ga0209463_11682491	F075601	MFEKEQNSEKLNKIMSAINDKHHMVSNDNEGTNNVQLEEKIYQQMNLIKLKDLNVLPLEEVRRNLDKKYGKMAIEVLKMD
Ga0209463_1178803	Ga0209463_11788031	F006781	PALRRGAAMRKIIKIKILVLLVAILTLTLAVSPAQACACGENWSAMSTEEIVSAINGAEDEPRIMAGQSGQLPPAPAGYEYDSTYKLVPTTP