Metagenome Family F099823

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F099823
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	58 residues
Representative Sequence	MTSRAVTITLELRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEHAEAA
Number of Associated Samples	80
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	15.53 %
% of genes near scaffold ends (potentially truncated)	25.24 %
% of genes from short scaffolds (< 2000 bps)	88.35 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (93.204 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.388 % of family members)
Environment Ontology (ENVO)	Unclassified (33.010 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.223 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.65% β-sheet: 22.35% Coil/Unstructured: 60.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00196	GerE	66.99
PF00571	CBS	2.91
PF07721	TPR_4	0.97
PF13561	adh_short_C2	0.97
PF05239	PRC	0.97
PF00474	SSF	0.97
PF00111	Fer2	0.97
PF01565	FAD_binding_4	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.20 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.20 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.20 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	90.29 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	90.29 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	31.07 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.33 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	31.07 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	13.59 %
Unclassified	root	N/A	6.80 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	5.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.94 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.97 %

Name	Rank	Taxonomy	Distribution
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	19.42 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	13.59 %
Unclassified	root	N/A	6.80 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	5.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	19.42 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	13.59 %
Unclassified	root	N/A	6.80 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	5.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Herbidospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora	0.97 %

Name	Rank	Taxonomy	Distribution
Pseudonocardia parietis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	13.59 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	10.68 %
Unclassified	root	N/A	6.80 %
Actinopolymorpha pittospori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	5.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Herbidospora galbida	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora → Herbidospora galbida	0.97 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_119103788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	638	Open in IMG/M
3300003998\|Ga0055472_10029552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1269	Open in IMG/M
3300003998\|Ga0055472_10111843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	777	Open in IMG/M
3300005093\|Ga0062594_101909107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300005093\|Ga0062594_102937189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300005093\|Ga0062594_102943699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300005337\|Ga0070682_100657731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	835	Open in IMG/M
3300005338\|Ga0068868_101568637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	618	Open in IMG/M
3300005339\|Ga0070660_101415040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	591	Open in IMG/M
3300005344\|Ga0070661_100323417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1205	Open in IMG/M
3300005347\|Ga0070668_101765199	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005455\|Ga0070663_102142976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300005456\|Ga0070678_101943691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	556	Open in IMG/M
3300005458\|Ga0070681_11476945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	604	Open in IMG/M
3300005547\|Ga0070693_100812162	Not Available	694	Open in IMG/M
3300005547\|Ga0070693_101223477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	578	Open in IMG/M
3300005562\|Ga0058697_10693744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	541	Open in IMG/M
3300005578\|Ga0068854_101530968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300005616\|Ga0068852_100800363	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300005840\|Ga0068870_10197838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1217	Open in IMG/M
3300005937\|Ga0081455_10372809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1000	Open in IMG/M
3300005981\|Ga0081538_10028067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3882	Open in IMG/M
3300005981\|Ga0081538_10138467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1128	Open in IMG/M
3300006031\|Ga0066651_10797868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300006169\|Ga0082029_1665185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	633	Open in IMG/M
3300006196\|Ga0075422_10088926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1171	Open in IMG/M
3300006844\|Ga0075428_102023709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	597	Open in IMG/M
3300009094\|Ga0111539_10002980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	22456	Open in IMG/M
3300009094\|Ga0111539_12919281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300009100\|Ga0075418_11634880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	700	Open in IMG/M
3300009147\|Ga0114129_10229572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2500	Open in IMG/M
3300009147\|Ga0114129_11813986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	741	Open in IMG/M
3300009156\|Ga0111538_10396785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1747	Open in IMG/M
3300009157\|Ga0105092_10296572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	912	Open in IMG/M
3300009176\|Ga0105242_10285496	Not Available	1501	Open in IMG/M
3300010044\|Ga0126310_10755934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	743	Open in IMG/M
3300010166\|Ga0126306_11814767	Not Available	511	Open in IMG/M
3300010362\|Ga0126377_12834772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	559	Open in IMG/M
3300010362\|Ga0126377_12865591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300010397\|Ga0134124_11722180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300010399\|Ga0134127_12363476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	611	Open in IMG/M
3300010400\|Ga0134122_12093356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	607	Open in IMG/M
3300010401\|Ga0134121_11852065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	631	Open in IMG/M
3300012958\|Ga0164299_11461359	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300014270\|Ga0075325_1158058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	579	Open in IMG/M
3300014302\|Ga0075310_1028254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1041	Open in IMG/M
3300014488\|Ga0182001_10614491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	525	Open in IMG/M
3300014968\|Ga0157379_11188571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300015371\|Ga0132258_10469821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3139	Open in IMG/M
3300015374\|Ga0132255_105650002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	529	Open in IMG/M
3300018422\|Ga0190265_10044861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	3803	Open in IMG/M
3300018422\|Ga0190265_10058088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	3420	Open in IMG/M
3300018422\|Ga0190265_10146901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2300	Open in IMG/M
3300018422\|Ga0190265_10163286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	2196	Open in IMG/M
3300018422\|Ga0190265_10193308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2037	Open in IMG/M
3300018422\|Ga0190265_10591791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	1228	Open in IMG/M
3300018422\|Ga0190265_11696227	Not Available	742	Open in IMG/M
3300018422\|Ga0190265_12681484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	595	Open in IMG/M
3300018422\|Ga0190265_13504745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	523	Open in IMG/M
3300018429\|Ga0190272_10453544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1070	Open in IMG/M
3300018429\|Ga0190272_11163201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	754	Open in IMG/M
3300018466\|Ga0190268_10633032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	767	Open in IMG/M
3300018466\|Ga0190268_10829777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	706	Open in IMG/M
3300018466\|Ga0190268_11063678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300018469\|Ga0190270_10346970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1347	Open in IMG/M
3300019377\|Ga0190264_10148042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1205	Open in IMG/M
3300025792\|Ga0210143_1046180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300025901\|Ga0207688_10771705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	609	Open in IMG/M
3300025912\|Ga0207707_10827673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300025917\|Ga0207660_11066247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300025938\|Ga0207704_10098344	Not Available	1943	Open in IMG/M
3300025961\|Ga0207712_11627722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	579	Open in IMG/M
3300025981\|Ga0207640_12166813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	504	Open in IMG/M
3300026035\|Ga0207703_10137065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2120	Open in IMG/M
3300026041\|Ga0207639_12081169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	529	Open in IMG/M
3300026067\|Ga0207678_11345740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	632	Open in IMG/M
3300026078\|Ga0207702_12062044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	560	Open in IMG/M
3300026118\|Ga0207675_102531889	Not Available	524	Open in IMG/M
3300026142\|Ga0207698_11213739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	768	Open in IMG/M
3300027628\|Ga0209463_1118688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658	Open in IMG/M
3300027880\|Ga0209481_10149047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1154	Open in IMG/M
3300027907\|Ga0207428_10093910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2326	Open in IMG/M
3300027907\|Ga0207428_10144389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1814	Open in IMG/M
3300027909\|Ga0209382_11052822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	844	Open in IMG/M
3300028381\|Ga0268264_11221190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	761	Open in IMG/M
3300028720\|Ga0307317_10286767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300028881\|Ga0307277_10067064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1485	Open in IMG/M
3300028881\|Ga0307277_10178400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	927	Open in IMG/M
3300030336\|Ga0247826_11216176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	605	Open in IMG/M
3300031164\|Ga0307502_10122295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora → Herbidospora galbida	562	Open in IMG/M
3300031229\|Ga0299913_10132437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2453	Open in IMG/M
3300031731\|Ga0307405_12165586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia parietis	500	Open in IMG/M
3300031824\|Ga0307413_10230097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1361	Open in IMG/M
3300031852\|Ga0307410_11247618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	649	Open in IMG/M
3300031901\|Ga0307406_10223981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1400	Open in IMG/M
3300031901\|Ga0307406_10532028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	958	Open in IMG/M
3300032002\|Ga0307416_100717431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1090	Open in IMG/M
3300032002\|Ga0307416_101495599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	781	Open in IMG/M
3300032005\|Ga0307411_10125191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1868	Open in IMG/M
3300032126\|Ga0307415_101220305	Not Available	709	Open in IMG/M
3300033551\|Ga0247830_10540798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	919	Open in IMG/M
3300034384\|Ga0372946_0346792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	720	Open in IMG/M
3300034690\|Ga0364923_0135675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.46%
Host-Associated	Host-Associated	48.54%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	48.54%
Terrestrial	Environmental → Terrestrial	47.57%
Aquatic	Environmental → Aquatic	3.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.50%
Marine	Environmental → Aquatic → Marine	2.91%
Roots	Host-Associated → Plants → Roots	1.94%
Phylloplane	Host-Associated → Plants → Phylloplane	1.94%
Freshwater	Environmental → Aquatic → Freshwater	0.97%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.30%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.59%
Loam	Environmental → Terrestrial → Soil → Loam	6.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.94%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.88%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.94%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.94%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300014270	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1	Environmental	Open in IMG/M
3300014302	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300025792	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027628	Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031164	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 16_S	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1191037882	3300002568	Soil	MTSRAVTITLDLRLAGEELDGRASDGTGSDRPFSGWLGLLVTIDALLNAAPEAEAA*
Ga0055472_100295522	3300003998	Natural And Restored Wetlands	MTSRAVTITLELRLAGDELDGRASDGIGTERPFSGWLGMLVTIDSLLNAADEDPPAEAA*
Ga0055472_101118431	3300003998	Natural And Restored Wetlands	MTSRAVTITLELRLAGDELDGSASDGNGHDRSFSGWLGLLVSIDALLTGAAQEPPAEAA*
Ga0062594_1019091071	3300005093	Soil	VTITLELRVAGDSLAGRAVDGAGHARDFSGWLGLVAAIDALVPAAAEDERRGVDR*
Ga0062594_1029371892	3300005093	Soil	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLAAEDENPPAEAA*
Ga0062594_1029436992	3300005093	Soil	MASRAVTITLDLRLAGDELDGRASDGNGTDRSFSGWLGLLVTIDALLNEAPEPAA*
Ga0070682_1006577311	3300005337	Corn Rhizosphere	MTSRAVTITLDLRLAGEELDGRASDGTGSDRSFSGWLGLLVTIDALLN
Ga0068868_1015686372	3300005338	Miscanthus Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNEAPE
Ga0070660_1014150402	3300005339	Corn Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEAEAEAA*
Ga0070661_1003234171	3300005344	Corn Rhizosphere	VHPVRMTSRAVTITLDLRLAGEELDGRASDGTGSDRSFSGWLGLLVTIDALLNAAPEAEAEAA*
Ga0070668_1017651992	3300005347	Switchgrass Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGSGPERPFSGWLGMLVTIDSLLAAEDENPPAEAA*
Ga0070663_1021429762	3300005455	Corn Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDAL
Ga0070678_1019436911	3300005456	Miscanthus Rhizosphere	MTSRAVTITLDLRLAGEELDGRASDGTGSDRSFSGWLGLLVTIDALLNAAPEAEAEAA*
Ga0070681_114769452	3300005458	Corn Rhizosphere	MTSRSVTITLELRQAGDELDGRASDGAGADRPFSGWLGLLVTVDALLNAAPEETRS*
Ga0070693_1008121622	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNEAPEPAA*
Ga0070693_1012234772	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTSRAVTITLELRLAGEELDGRASDGNSPDRPFSGWLGMLVTIDSLLTAAADEDAEAA*
Ga0058697_106937442	3300005562	Agave	MTTRAVTITLELRLAGDELDGRASDENGLDKPFMGWLGLLVTLDSLLDQAAEPGAQAS*
Ga0068854_1015309681	3300005578	Corn Rhizosphere	MTSRSVTITLELRQAGDELDGRASDGAGADRPFSGWLGLLVTVDALLNAAPEQTHS*
Ga0068852_1008003632	3300005616	Corn Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGAGADRPFSGWLGLLVTVDALLNAAPEETRS*
Ga0068870_101978382	3300005840	Miscanthus Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEAEAA*
Ga0081455_103728092	3300005937	Tabebuia Heterophylla Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLAAAADDENSPAEAA*
Ga0081538_100280674	3300005981	Tabebuia Heterophylla Rhizosphere	MTSRAVTITLELRLAGDELDGRATDGSEERPFSGWLGMLVAIDAMLAAAPEAVER*
Ga0081538_101384672	3300005981	Tabebuia Heterophylla Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLAAGDEDPAEAA*
Ga0066651_107978682	3300006031	Soil	MTSRSVTITLELRQAGDELDGRASDGTGADRTFSGWLGLLVTVDALLNAAPDEASEEAA*
Ga0082029_16651851	3300006169	Termite Nest	MTSRAVTITLELRLAGDELDGRASDGSGPERPFSGWLGMLVTIDSLLSAAD
Ga0075422_100889262	3300006196	Populus Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGSGPERPFSGWLGMLVTIDSLLAAADENPPAEAA*
Ga0075428_1020237091	3300006844	Populus Rhizosphere	LELRLAGDELDGRASDGTGPERPFSGWLGMLVTIDSLLAAADENPPAEEAAPAGPQLSS*
Ga0111539_1000298025	3300009094	Populus Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLAAADENPPAEAA*
Ga0111539_129192811	3300009094	Populus Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLAADEDPPAEAA*
Ga0075418_116348801	3300009100	Populus Rhizosphere	MTSRSVTITLELRQAGDELDGRASAQAGADRTFSGWLGLLVTVDALLNAAPATDSSS*
Ga0114129_102295724	3300009147	Populus Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGSGPDKPFSGWLGMLVTIDSLLAAADENPPAEAA*
Ga0114129_118139862	3300009147	Populus Rhizosphere	MTSRAVTITLELRLAGDELDGRATDGSEDRPFSGWLGMLVAIDAMLATAPELVEET*
Ga0111538_103967852	3300009156	Populus Rhizosphere	MESGASVAKLWCMTTREVTITLELRQAGEELDGSASDGNGIDRSFSGWLGLLVTLDSMLDAAGDEPSDET*
Ga0105092_102965721	3300009157	Freshwater Sediment	VPMTSRAVTITLNLRLAGDELDGRASDGNGDSRPFSGWLGLLVAIDAMLTAAPEEDA*
Ga0105242_102854962	3300009176	Miscanthus Rhizosphere	MTSRAVTVTLELRLAGDELDGRASDGNGVDRSFSGWLGLLVTLDSLLDAA
Ga0126310_107559342	3300010044	Serpentine Soil	MTSRAVTITLELRLAGDELDGQASDGNGNDRSFSGWLGLLVSIDALLSGAAEQPAEAA*
Ga0126306_118147671	3300010166	Serpentine Soil	MTTRAVTITLELRLAGDELDGRASDGNGPERPFSGWLGLLVTIDSLLNAAAEDPPAAAA*
Ga0126377_128347722	3300010362	Tropical Forest Soil	MTSRAVTITLELRLAGEELDGRASDENGLDRPFSGWLGLLVTLDSLLDAADVEAEAA*
Ga0126377_128655912	3300010362	Tropical Forest Soil	MTSRAVTITLDLRLAGDELDGRASDGTGADRPFSGWLGLLVTIDALLNAAPELAEEAEAA
Ga0134124_117221802	3300010397	Terrestrial Soil	PVRMTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEAEAEAA*
Ga0134127_123634762	3300010399	Terrestrial Soil	MTSRAVTITLELRLAGDELDGRASDGSGPERPFSGWLGMLVTIDSLLAADEDPPAEAA*
Ga0134122_120933562	3300010400	Terrestrial Soil	MTSRAVTITLDLRLAGEELDGRASDGNSPDRPFSGWLGMLVTIDSLLTAAADEDAEAA*
Ga0134121_118520652	3300010401	Terrestrial Soil	MTSRAVTITLDLRLAGEELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEAEAEAA*
Ga0164299_114613591	3300012958	Soil	MASRSVTITLELRQAGDELDGRASDGTGTDRTFSGWLGLLVTVDALLNAAPEEASEAA*
Ga0075325_11580581	3300014270	Natural And Restored Wetlands	DGAGAGRGHAVPVTSRAVTITLELRLAGDELDGRATDGSEERPFSGWLGLLVAIDAMLAAAPEAVES*
Ga0075310_10282542	3300014302	Natural And Restored Wetlands	MTTRAVTITLELRLAGDELDGRASDGIGTERPFSGWLGMLVTIDSLLSAADDNPPAEAA*
Ga0182001_106144912	3300014488	Soil	MATAAGGSILSTMTTRAVTITLELRLAGDELDGRASDGNGSDLPFSGWLGLLVAIDAMLAAA
Ga0157379_111885711	3300014968	Switchgrass Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVPIDALLNAAPEAEAEAA*
Ga0132258_104698212	3300015371	Arabidopsis Rhizosphere	MTSRAVTITLDLRLAGDELDGRASGEGGEDRTFSGWLGLLVTIDALLNAAPEAEAA*
Ga0132255_1056500021	3300015374	Arabidopsis Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGNGNDRSFSGWLGLLVSIDALLAEGAGSPAAEAA*
Ga0190265_100448612	3300018422	Soil	MTSRAVTITLELRLAGDELDGRATDGTGSDRPFSGWLGMLVTIDSLLDAAVAEASAD
Ga0190265_100580886	3300018422	Soil	MVLGGRALHPVAMTSRAVTITLELRLAGDELDGRASDGTGEDRSFSGWLGLLVAIDALVDAAPEREAA
Ga0190265_101469012	3300018422	Soil	MTSRAVTITLELRLAGDELDGRATDGAGTDRSFSGWLGMLVTIDSLLDAAVAEAPAES
Ga0190265_101632864	3300018422	Soil	MTSRAVTITLELRLAGDELDGRATDETGIDRPFSGWLGMLVTIDSLLEAAAAQAPAPADC
Ga0190265_101933082	3300018422	Soil	MTSRAVTITLELRLAGEELDGRAISDGSGEGRPFSGWLGLLVAIDAMLAAAPPAEA
Ga0190265_105917911	3300018422	Soil	MTSRAVTITLELRLAGEELDGRAISDGSGEGRPFSGWLGLLVAIDAMLAAAPAES
Ga0190265_116962271	3300018422	Soil	VTITLELRLAGDELDGRATDGSGDDRPFSGWLGLLVAIDHLLSAAPETHDLARPPTNVNGAG
Ga0190265_126814842	3300018422	Soil	MTSRAVTITLELRLAGDELDGRATDGTGDDRPFSGWLGLLVAIDHLLNAAPENPQTS
Ga0190265_135047452	3300018422	Soil	MTSRAVTITLELRLAGDELDGRASDGTGDDRSFSGWLGLLVAIDALLDAAPEQAEREAAA
Ga0190272_104535442	3300018429	Soil	MTSRAVTITLELRLAGDELDGRATDDAGTDRSFSGWLGMLVTIDSLLDAAVAEAPAD
Ga0190272_111632011	3300018429	Soil	AVTITLELRLAGDELDGRATDGAGTDRSFSGWLGMLVTIDSLLDAAVAEPPVD
Ga0190268_106330321	3300018466	Soil	SRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLSTADEHPPAEAA
Ga0190268_108297772	3300018466	Soil	MTSRAVTITLELRLAGDELDGRATDGSDEKPFSGWLGLLVAIDAMLAAAPEAVET
Ga0190268_110636782	3300018466	Soil	TITLELRLAGDELDGRASADSGDGRPFSGWLGLLVAIDSLLAAAPEAEAEQAA
Ga0190270_103469702	3300018469	Soil	MTSRAVTITLELRLAGDELDGRATDGAGTDRSFSGWLGMLVTIDSLLDAAVAEAPVD
Ga0190264_101480422	3300019377	Soil	MTSRAVTITLELRLAGDELDGRATDGTGTDRPFSGWLGMLVTIDSLLDAAVAAAPAET
Ga0210143_10461801	3300025792	Natural And Restored Wetlands	RLHAVLMTSRAVTITLELRLAGDELDGRASDGIGTERPFSGWLGMLVTIDSLLNAADEDPPAEAA
Ga0207688_107717052	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEAEAEAA
Ga0207707_108276731	3300025912	Corn Rhizosphere	MTSRSVTITLELRQAGDELDGRASDGAGADRPFSGWLGLLVTVDALLNAAPEETRS
Ga0207660_110662472	3300025917	Corn Rhizosphere	MTSRAVTITLELRQAGDELDGRASDGAGADRPFSGWLGLLVTVDALLNAAPEETRS
Ga0207704_100983441	3300025938	Miscanthus Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWL
Ga0207712_116277221	3300025961	Switchgrass Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEA
Ga0207640_121668132	3300025981	Corn Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLNAADENPQAEAAA
Ga0207703_101370652	3300026035	Switchgrass Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEAEAA
Ga0207639_120811692	3300026041	Corn Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEAEAEA
Ga0207678_113457401	3300026067	Corn Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGSDRSFSGWLGLLVTIDALLNAAPEAEAEAA
Ga0207702_120620442	3300026078	Corn Rhizosphere	MTSRAVTITLDLRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEAEAEVA
Ga0207675_1025318891	3300026118	Switchgrass Rhizosphere	GVHAVLMTSRAVTITLELRLAGDELDGRASDGSGPERPFSGWLGMLVTIDSLLAAEDENPPAEAA
Ga0207698_112137392	3300026142	Corn Rhizosphere	MTSRAVTITLDLRLAGEELDGRASDGTGSDRSFSGWLGLLVTIDALLNAAPE
Ga0209463_11186882	3300027628	Agave	MTSRAVTITLELRLAGDELDGRATDGSGDDRPFTGWLGLLVAIDHLLSAAPEAQET
Ga0209481_101490472	3300027880	Populus Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGSGPERPFSGWLGMLVTIDSLLAAADENPPAEAA
Ga0207428_100939104	3300027907	Populus Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLAAADENPPAEAA
Ga0207428_101443893	3300027907	Populus Rhizosphere	MESGASVAKLWCMTTREVTITLELRQAGEELDGSASDGNGIDRSFSGWLGLLVTLDSMLDAAGDEPSDET
Ga0209382_110528222	3300027909	Populus Rhizosphere	MTSRAVTITLELRLAGDELDGRASAGSGDGRPFSGWLGLLVAIDSLLAAAPEAERAA
Ga0268264_112211902	3300028381	Switchgrass Rhizosphere	MTSRAVTITLDLRLAGEELDGRASDGTGSDRSFSGWLGLLVTIDALLNAAPEAEAEAA
Ga0307317_102867672	3300028720	Soil	MTSRAVTITLELRLAGDELDGRASDGTGIDRSFSGWLGLLVTIDALLNAAPEHAEAA
Ga0307277_100670642	3300028881	Soil	MTTRAVTVTLELRLAGDELDGRASDGNGVDRSFSGWLGLLVTLDSLLDAAAAQPAEAA
Ga0307277_101784002	3300028881	Soil	MSAPPPPFMLVDMTTRAVTVTLELRLAGDELDGRASDGNGLDRSFSGWLGLLVTLDSLLDAAPAAQPAG
Ga0247826_112161762	3300030336	Soil	MTSRAVTITLELRQAGEELDGHASDGSGDGRSFSGWLGLLVAIDALLSAAPESSS
Ga0307502_101222952	3300031164	Soil	MTSRAVTITLELRLAGDELDGRATDGAGIDRSFSGWLGMLVTIDSLLDAAVADGAAER
Ga0299913_101324372	3300031229	Soil	MTSRAVTITLELRLAGDELDGRATDETGTDRPFSGWLGMLVTIDSLLEAAAAQAPDEG
Ga0307405_121655862	3300031731	Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLAAEEDPPAEAA
Ga0307413_102300972	3300031824	Rhizosphere	MAGTAVASMLCTMTSRAVTITLELRLAGDELDGRASDGFGPERPFSGWLGMLVTIDSLLSATDESPPAEAA
Ga0307410_112476182	3300031852	Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGTGPERPFSGWLGMLVTIDSLLAADEDPPAEAA
Ga0307406_102239812	3300031901	Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLAADEDPPAEAA
Ga0307406_105320282	3300031901	Rhizosphere	LAGDVLDGRASDGIGSERPFSGWLGMLVTIDSLLNAADEDPQAEAEAAA
Ga0307416_1007174312	3300032002	Rhizosphere	ASMLCTMTSRAVTITLELRLAGDELDGRASDGFGPERPFSGWLGMLVTIDSLLSATDESPPAEAA
Ga0307416_1014955991	3300032002	Rhizosphere	TLELRLAGDELDGRASDGIGPERPFSGWLGMLVTIDSLLAADEDPPAEAA
Ga0307411_101251912	3300032005	Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGIGPERPFSGWLGMLVAIDSLLAAEEDPPAEAA
Ga0307415_1012203052	3300032126	Rhizosphere	MTSRAVTITLELRLAGDELDGRASDGTGPERPFSGWLGMLVTIDSLLAAEEDPPAEAA
Ga0247830_105407982	3300033551	Soil	VEGEAVTITLELRVAGDSLAGRAVDGAGHARDFSGWLGLVAAIDALVPAAAEDERRGVDR
Ga0372946_0346792_550_720	3300034384	Soil	MTSRAVTITLELRLAGDELDGRATDGAGIDRTFSGWLGMLVTIDSLLEAASAELPAD
Ga0364923_0135675_212_379	3300034690	Sediment	MTSRAVTITLDLRLAGEELDGRASDGNGDSRPFSGWLGLLVAIDAMLSAAPEDDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099823

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences