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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027485 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0091563 | Ga0207635 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3w-11 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 58205748 |
| Sequencing Scaffolds | 33 |
| Novel Protein Genes | 37 |
| Associated Families | 37 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 8 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 8 |
| All Organisms → cellular organisms → Bacteria | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001079 | Metagenome / Metatranscriptome | 785 | Y |
| F001437 | Metagenome / Metatranscriptome | 695 | Y |
| F005723 | Metagenome / Metatranscriptome | 392 | Y |
| F005913 | Metagenome / Metatranscriptome | 386 | Y |
| F007058 | Metagenome / Metatranscriptome | 359 | Y |
| F007262 | Metagenome / Metatranscriptome | 354 | Y |
| F007283 | Metagenome | 354 | Y |
| F007819 | Metagenome / Metatranscriptome | 344 | Y |
| F009227 | Metagenome / Metatranscriptome | 321 | Y |
| F009568 | Metagenome / Metatranscriptome | 316 | Y |
| F015861 | Metagenome / Metatranscriptome | 251 | Y |
| F017525 | Metagenome / Metatranscriptome | 240 | Y |
| F017538 | Metagenome / Metatranscriptome | 240 | Y |
| F018750 | Metagenome / Metatranscriptome | 233 | Y |
| F020184 | Metagenome / Metatranscriptome | 225 | Y |
| F022675 | Metagenome / Metatranscriptome | 213 | Y |
| F024579 | Metagenome / Metatranscriptome | 205 | Y |
| F028284 | Metagenome / Metatranscriptome | 192 | Y |
| F028610 | Metagenome / Metatranscriptome | 191 | Y |
| F028880 | Metagenome / Metatranscriptome | 190 | Y |
| F030869 | Metagenome / Metatranscriptome | 184 | N |
| F036579 | Metagenome | 169 | Y |
| F037405 | Metagenome / Metatranscriptome | 168 | Y |
| F043277 | Metagenome / Metatranscriptome | 156 | N |
| F047941 | Metagenome / Metatranscriptome | 149 | Y |
| F053280 | Metagenome / Metatranscriptome | 141 | Y |
| F053375 | Metagenome | 141 | N |
| F053396 | Metagenome | 141 | N |
| F053441 | Metagenome / Metatranscriptome | 141 | Y |
| F058775 | Metagenome | 134 | Y |
| F062731 | Metagenome / Metatranscriptome | 130 | N |
| F062740 | Metagenome / Metatranscriptome | 130 | Y |
| F063460 | Metagenome | 129 | Y |
| F066633 | Metagenome / Metatranscriptome | 126 | Y |
| F071282 | Metagenome / Metatranscriptome | 122 | Y |
| F082753 | Metagenome / Metatranscriptome | 113 | N |
| F089147 | Metagenome / Metatranscriptome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207635_1000123 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6 | 1845 | Open in IMG/M |
| Ga0207635_1000337 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082 | 1511 | Open in IMG/M |
| Ga0207635_1000556 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1358 | Open in IMG/M |
| Ga0207635_1000703 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1292 | Open in IMG/M |
| Ga0207635_1001098 | All Organisms → cellular organisms → Bacteria | 1167 | Open in IMG/M |
| Ga0207635_1001273 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1125 | Open in IMG/M |
| Ga0207635_1001615 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1060 | Open in IMG/M |
| Ga0207635_1003146 | All Organisms → cellular organisms → Bacteria | 885 | Open in IMG/M |
| Ga0207635_1003511 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 855 | Open in IMG/M |
| Ga0207635_1004033 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 823 | Open in IMG/M |
| Ga0207635_1004873 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 777 | Open in IMG/M |
| Ga0207635_1005243 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 760 | Open in IMG/M |
| Ga0207635_1006765 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 706 | Open in IMG/M |
| Ga0207635_1007029 | All Organisms → cellular organisms → Bacteria | 698 | Open in IMG/M |
| Ga0207635_1007157 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 694 | Open in IMG/M |
| Ga0207635_1007605 | Not Available | 682 | Open in IMG/M |
| Ga0207635_1008197 | Not Available | 667 | Open in IMG/M |
| Ga0207635_1010934 | All Organisms → cellular organisms → Bacteria | 608 | Open in IMG/M |
| Ga0207635_1011229 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 603 | Open in IMG/M |
| Ga0207635_1012676 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 579 | Open in IMG/M |
| Ga0207635_1012694 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 579 | Open in IMG/M |
| Ga0207635_1013544 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 566 | Open in IMG/M |
| Ga0207635_1013572 | Not Available | 566 | Open in IMG/M |
| Ga0207635_1014967 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 547 | Open in IMG/M |
| Ga0207635_1015628 | Not Available | 539 | Open in IMG/M |
| Ga0207635_1016843 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 525 | Open in IMG/M |
| Ga0207635_1017278 | Not Available | 521 | Open in IMG/M |
| Ga0207635_1018038 | Not Available | 513 | Open in IMG/M |
| Ga0207635_1018605 | All Organisms → cellular organisms → Bacteria | 507 | Open in IMG/M |
| Ga0207635_1018614 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 507 | Open in IMG/M |
| Ga0207635_1018702 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 506 | Open in IMG/M |
| Ga0207635_1019068 | Not Available | 503 | Open in IMG/M |
| Ga0207635_1019365 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45 | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207635_1000123 | Ga0207635_10001231 | F089147 | VGIYTKRDSLLSIAYSEELISATISATLQRTDRHHGIVGQKRCHFQGDS |
| Ga0207635_1000337 | Ga0207635_10003373 | F053280 | PWAPWSNRVFPEFFSKKMGCIHIQRLYGVDLMRLCRK |
| Ga0207635_1000412 | Ga0207635_10004123 | F071282 | MRIGLTAAGVLAVLLLALVHVTNGRARPTTAHTCSATDRQFIETARTNMTALELWSEQYQSGDASGEDVERQARSASKIMRGTGPTDSSLQQARLLVIG |
| Ga0207635_1000556 | Ga0207635_10005561 | F058775 | GETVDAVAGEADVGLAIRDALATFTADEIVVAVRPEEEEGFVESSATDTARQDRLVEGVPVRFVVIGD |
| Ga0207635_1000703 | Ga0207635_10007033 | F018750 | MRRQFVLAALLGLAILTVGTSATLAARGSGNVLYVFNGRMMADAGSNPTIAVDVNGGNKPALRKLVGQSDNANFAVDAHTQYIRWTHGVPTVVPESNLLAGDRVSVRILAERRASLAQIEGTPARRVADSGPSGRFPRQSLWLFQG |
| Ga0207635_1001098 | Ga0207635_10010982 | F053441 | SATSGGKAEVNQYCGAANYGNPFCIYPWYTSGTTGFHYGADFPDAVNDYGKADQFAQTLDCGGPFGPDSTYCDTVIQP |
| Ga0207635_1001273 | Ga0207635_10012731 | F028880 | VVSGRRLLFRYSRDDQLLNPSLLDGQLLYVRSTRCSQQLVLGRARGKRDRVLYQIGPLAGQDAGHERHHTRQGEHLPCPFRPRPTAKMLWTTALSPTTAYVTVLKPAPGGRTVPTLLAVPRR |
| Ga0207635_1001615 | Ga0207635_10016152 | F001437 | MAAFLFRLETVDGAPAEPPTFATAVPNWSPGDEIPLGHRALRVIGKRDDDADQPPMLIVEHEE |
| Ga0207635_1003146 | Ga0207635_10031461 | F009568 | MDPERARELLAQERERIERSLARLGHQDTGEPADEFDPANQASDLYQDELDEGLS |
| Ga0207635_1003511 | Ga0207635_10035111 | F036579 | VAVDVSVPRPAAVSRATAVPARLLLSGIVAASFLLRFVAALWHTTPLYFPDEYIYSGIARSLAESGKPLIRGSSAHFPAMLEPLLAAPFWLTHDPALA |
| Ga0207635_1004033 | Ga0207635_10040331 | F005723 | RQAAGFIRDTMWRAGDGTLLVDGKPDRRPLLVQTYASTVQFSGVERVRHELIFDLYRPVGTPRLRLLAAGRFADRWLAPRGAITVWTKTGGTLDLVLALPAHTQVTPIVLTGKGIKRTVRVHPGQRIALSFPVPAEGPWSLHFSSARPGYLGERAVSVRAERVSFR |
| Ga0207635_1004873 | Ga0207635_10048731 | F007819 | VSSEDQAVYFNAVPLFVLSGAYLMVAALLAPTLWRERRRVAVTDVALASIFPGIAIPAAIFGAVVLHDRSPIGGHVWPPFVAIVIALIPALIFLRRWSEPAVVVMSGPRAREAEELVSVRDRELDAVAQIVNALARSQDPVEAARTLLDKVESLLGTDFTALALVTADEDEATGLVARSGGEDIAWWSEMRVHLHNEPSGIASAFFEAAP |
| Ga0207635_1005243 | Ga0207635_10052431 | F020184 | DLRGFLLKNGCPSESRSEDVFEVRVLWSEGERSDSADRLKIFGHLREWCSEHPGVKANIL |
| Ga0207635_1006765 | Ga0207635_10067651 | F066633 | EQNRWAASRFGPHGKLIHPDRDEALTVAALARELPVPLGGLDPETCEADRQLEIGRADGLSAVCADLVERSVA |
| Ga0207635_1007029 | Ga0207635_10070292 | F017538 | MTDSLTLVRASRNRDGEWSSDDYDVFEGKQLVGRITLTPQAPEGRPWFWMITVRPESSQNQGYAVSREQAMLEFNARWLNP |
| Ga0207635_1007157 | Ga0207635_10071571 | F047941 | GKSPGNCTANKSKHGQLIRAGVTGRFGGYLEGTITGGTFNKNATCPVSACFTSDFITAFFGAGAVFSCDGATNSTDCKFNYNYTAPSRAANRPKLIVRNWQDRGKGSGTTLKEHFKGDIASS |
| Ga0207635_1007605 | Ga0207635_10076052 | F017525 | MSETLITTDQEHAERLDADAPCTAELAECTCPDFCERDHDNE |
| Ga0207635_1008197 | Ga0207635_10081971 | F005913 | LADLPRQVRGEIDLMRLDMLSPEGVASMQGDLHVSAAAADRIASSAEGLSALVSNERQIVLDELSRQRNLVMGAVSVEREQAVNAIIRAFAAERSELLRNVDLERLATLEWATAERREAIADVRRELAGSMEAVRGERAVVVDDLRHIVDVVLLRVAIFLVAAVVLAPLVAHAYARVWPRRLR |
| Ga0207635_1009962 | Ga0207635_10099621 | F043277 | AGFAKVRNRGPFFGRVKRGKIVATSNVHVNGCESRGDTNDNMIRCKGRGITFNTVGAERWRLRLRGRGISGSGFIHGCLVLDARDTGSTGTFRRGLIGDPKPWPRSRTRYTLGTGTC |
| Ga0207635_1010934 | Ga0207635_10109342 | F028284 | LILVTNAPFWLVNVVAGVVYAVTMPIVALATAYAYFDARVRVELEGEHHPVELPAEIGLS |
| Ga0207635_1011229 | Ga0207635_10112292 | F007283 | MSVYELDISWAATANERRHLRWELLACEKVLGVFLTAREDSVAVLFAGDRLGFRTWAKALEPEPHEARS |
| Ga0207635_1012676 | Ga0207635_10126761 | F053396 | MTGLGVLNADYQSGAVKAKDVSQQAFDSAVRIQHTDPKDPSLRTAQRYLDAMFQEYGTAVTIQAKGGDAGERMFRAYGLANFAHDVLAQAQPALYKQGCDVGPLL |
| Ga0207635_1012694 | Ga0207635_10126941 | F063460 | VSTAMQSFRELDDLVLHLKGLVLVRGVREERGADADELAMYGAEIDRVRDRL |
| Ga0207635_1013544 | Ga0207635_10135441 | F024579 | MQNIESLEAINQDELVRQVVLRMAGLARGGRLPGFVAAVGADTELVAETKATVLKLARDETFLLACEDYMRATAYHH |
| Ga0207635_1013572 | Ga0207635_10135721 | F022675 | IKRIALGLAIAAFAAPVAQAKVDEGSSIQANGYQAFETDFPSYANGVNASDYGMPRPTATDYAISRGDLIEVVRSTPNGTSSDKIEFVRTQPRSIGEPQVVAAGFDWKDAGVGAGLALALVLLGGGAALASRHVGRAQTAS |
| Ga0207635_1014967 | Ga0207635_10149671 | F015861 | VRRAMDPGCPDGRNRCGSKQTTHGEQATKPPGEWNVYVDAAGVWKTWGNGLLRARDGQVFHGGPTFDLHLPRGRPWRVFVFTRECDFGSLGNADDAAHAMTPCPLSNEVGTFDGDDVPGISVAHFRSPSAALGLHRLRPQRHGSTCPAVNRLGCYELAFRVERVPE |
| Ga0207635_1015348 | Ga0207635_10153481 | F062740 | VSRYLTEDPHVRFSVWSPEGVAEAAVSLEEEEAERLAGFLATPAPARPGAVE |
| Ga0207635_1015628 | Ga0207635_10156282 | F062731 | MQVLAATVVVNPWYRQFYLQRGDAPWASDQLSRAGIERALESWEGFVFVGTSMYGNPVEVTLELHDEEPSPQEDADRVTEVSLSGSGPLGVLSWGETEAELSFDLPEGPLRLRASHSGLAAADAHPDNDVSGEE |
| Ga0207635_1016843 | Ga0207635_10168431 | F007058 | AGRAGFAAARNANAIDVAELDGVWNVKRLGGLLPPLIGVCKVIHGNTGETKLGPLPGASFDVVGRSLRYRAPFTGFVDELEPDGERYLGLATFRGRQFGRFAMERIGD |
| Ga0207635_1017278 | Ga0207635_10172781 | F053375 | MHMHMHVTGFSAATILVFAIASPLHAQGIEVFGGYSVNADYVQNRPAIPVVDQKASPFFSLGSGPTGFEASFKHDVRNGLG |
| Ga0207635_1018038 | Ga0207635_10180382 | F030869 | MAATLSHAAGQERYEVREILEGQALGHEVRHECRDYVQAVEYAFEFLQRRDPGREGIVHALEVVRVDGSHRETVWSYDHEREQARLDPVRKWGYDVTRSWSGPTSRSPP |
| Ga0207635_1018605 | Ga0207635_10186051 | F082753 | TLRTTVEGGLVTLSVATSEAEVERLRAAYAVGGDPGARLDVHGRYVALWLREPSPTQRQVTYDCAY |
| Ga0207635_1018614 | Ga0207635_10186141 | F001079 | METSLFPVSALPYVSWSSASSAVIPAEQWPLVFGSMQALKGHVQEYPGCQKLEAFVAPSGSDYRLRCYTTWDTPEQLEGFLERGYTVERLLADLDAPAPERTLIMEKVF |
| Ga0207635_1018614 | Ga0207635_10186142 | F007262 | STRQKANIYPVDSFGGYTTELAGPATAFFLILTVVLSGFAVVLIVGHLVWGQKF |
| Ga0207635_1018702 | Ga0207635_10187021 | F037405 | VSFNDWLLALHVLSAFAYVAGVVLFWILIVAVRRIDTPEETIRMGPIVNVGNAAVGIGAG |
| Ga0207635_1019068 | Ga0207635_10190682 | F009227 | MKGSVLERIVSSLFPVFAFVALFAVRIVYGLFFEGQPYTLPHFLAGFSVTLVFIVVGGLLLVLGAWP |
| Ga0207635_1019365 | Ga0207635_10193652 | F028610 | LPLPADKIQWIQEQMVKAGKLKAPLDLKTVTAPEYREKALKVIGH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |