3300027463: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-C (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027463
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091528 | Ga0207627
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-C (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24078356
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F005159	Metagenome	410	Y
F009182	Metagenome / Metatranscriptome	322	Y
F010803	Metagenome / Metatranscriptome	299	Y
F014458	Metagenome / Metatranscriptome	263	Y
F052753	Metagenome / Metatranscriptome	142	Y
F064904	Metagenome / Metatranscriptome	128	Y
F075367	Metagenome / Metatranscriptome	119	Y
F096126	Metagenome / Metatranscriptome	105	N
F104619	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207627_100832	All Organisms → cellular organisms → Bacteria → Proteobacteria	729
Ga0207627_100848	All Organisms → cellular organisms → Bacteria	726
Ga0207627_100956	All Organisms → cellular organisms → Bacteria → Proteobacteria	705
Ga0207627_101714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619
Ga0207627_102429	All Organisms → cellular organisms → Bacteria	573
Ga0207627_102459	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571
Ga0207627_103150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537
Ga0207627_103678	Not Available	518
Ga0207627_104261	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207627_100832	Ga0207627_1008321	F014458	MKRTLLGGLIGGLIGGLIGAELVVLAPKNWGVIQTATAAPTHPQDVLAASRIELRDASGKVRAELAMSADGGPGLFFFDSAGRNRLVMGLYSSAENEGPSLVLNDPQQQAAGIFRLFGPHDTPVIVLKSRGRDRSVYGLNPNSNDPFLANYASDGTKSDIFGH
Ga0207627_100848	Ga0207627_1008481	F075367	MMRPSIAIAIDYLANCPEFLGALAQLSWKEWQEIYQQREQTLDDCLKSYRERTNT
Ga0207627_100956	Ga0207627_1009561	F052753	MVTPGVSPRPPRALRWVAVGQALLWGAIGLGAFLLLAKSVQNSSEFGRWQLWILVV
Ga0207627_101714	Ga0207627_1017141	F001519	MTLVNSLCAEISIFDGVGESTGVVVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPIDLWPKSKEPVTVHKHDWTVISSIPRTSRAIKKKQRVARV
Ga0207627_102429	Ga0207627_1024291	F009182	EPENETFRFRIQFKKSHVSRDELIGTLREILAQLEGSSSKADSTAA
Ga0207627_102459	Ga0207627_1024591	F005159	MKPTPQISSEPRKQRNYPLTDYQYQTSALSAGRSVAKKTPSPLELKTFRKLSTEFFANETPRDYVAELFLFILITGIAAW
Ga0207627_103150	Ga0207627_1031501	F064904	MSQLMPIVVFLSWLSLPVLIVCIFDDWFLRPRRTLAAVA
Ga0207627_103392	Ga0207627_1033921	F104619	MHRSPNQIARSLRAFRNAHRLGLLRSVRISFGADACAVVRSQEGIEYMGNVVPRLPLSGCTRGQCDCKYVPSGTDHL
Ga0207627_103678	Ga0207627_1036781	F096126	GSPANDGNGWSSAQHSHSDEPLGSQGRYGSGARSEPQDPLGSGRREAPFGPEISWPYGFRKLDPQSREVLESAYGTSPAYQQPAMDDFGYGDPGYSDPSYEGPKTPYGNPAFPAGHGADHGAGHAGRQRDFGGTGYRPSGSSGSLPGYQVPEIRDPALPSYQGPSHQGPSHQ
Ga0207627_104261	Ga0207627_1042612	F010803	GHAPHVDEMLAVAVGLKHPLTEMKKAGVALVELKRVSPPSGELVWLATPKLLRKAAK