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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027457 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072143 | Ga0207625 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-D (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 19142665 |
| Sequencing Scaffolds | 29 |
| Novel Protein Genes | 37 |
| Associated Families | 37 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 12 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.42 | Long. (o) | -89.32 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001496 | Metagenome / Metatranscriptome | 683 | Y |
| F005688 | Metagenome / Metatranscriptome | 393 | Y |
| F006680 | Metagenome / Metatranscriptome | 367 | Y |
| F007788 | Metagenome / Metatranscriptome | 345 | Y |
| F008640 | Metagenome | 330 | Y |
| F008836 | Metagenome / Metatranscriptome | 327 | Y |
| F009373 | Metagenome / Metatranscriptome | 319 | Y |
| F011085 | Metagenome / Metatranscriptome | 295 | Y |
| F012304 | Metagenome | 282 | N |
| F013826 | Metagenome / Metatranscriptome | 268 | Y |
| F013827 | Metagenome / Metatranscriptome | 268 | Y |
| F015162 | Metagenome | 257 | Y |
| F016464 | Metagenome / Metatranscriptome | 247 | Y |
| F018099 | Metagenome | 237 | Y |
| F020069 | Metagenome / Metatranscriptome | 226 | Y |
| F022090 | Metagenome / Metatranscriptome | 216 | Y |
| F029253 | Metagenome / Metatranscriptome | 189 | Y |
| F033498 | Metagenome / Metatranscriptome | 177 | Y |
| F033545 | Metagenome | 177 | N |
| F040398 | Metagenome / Metatranscriptome | 162 | Y |
| F040565 | Metagenome / Metatranscriptome | 161 | Y |
| F040874 | Metagenome / Metatranscriptome | 161 | Y |
| F044168 | Metagenome / Metatranscriptome | 155 | Y |
| F053430 | Metagenome / Metatranscriptome | 141 | Y |
| F056809 | Metagenome / Metatranscriptome | 137 | N |
| F059436 | Metagenome / Metatranscriptome | 134 | N |
| F064599 | Metagenome / Metatranscriptome | 128 | Y |
| F073610 | Metagenome | 120 | Y |
| F076538 | Metagenome / Metatranscriptome | 118 | Y |
| F077601 | Metagenome | 117 | N |
| F078471 | Metagenome / Metatranscriptome | 116 | Y |
| F080568 | Metagenome / Metatranscriptome | 115 | Y |
| F093675 | Metagenome / Metatranscriptome | 106 | Y |
| F098129 | Metagenome | 104 | N |
| F099258 | Metagenome / Metatranscriptome | 103 | N |
| F103330 | Metagenome | 101 | N |
| F105615 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207625_100041 | Not Available | 2392 | Open in IMG/M |
| Ga0207625_100104 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1976 | Open in IMG/M |
| Ga0207625_100299 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1554 | Open in IMG/M |
| Ga0207625_100727 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1244 | Open in IMG/M |
| Ga0207625_100809 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1216 | Open in IMG/M |
| Ga0207625_101282 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1039 | Open in IMG/M |
| Ga0207625_101364 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1015 | Open in IMG/M |
| Ga0207625_101704 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 934 | Open in IMG/M |
| Ga0207625_102020 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 877 | Open in IMG/M |
| Ga0207625_102480 | Not Available | 812 | Open in IMG/M |
| Ga0207625_102488 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 811 | Open in IMG/M |
| Ga0207625_102590 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 798 | Open in IMG/M |
| Ga0207625_103076 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 747 | Open in IMG/M |
| Ga0207625_103512 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 709 | Open in IMG/M |
| Ga0207625_103731 | Not Available | 691 | Open in IMG/M |
| Ga0207625_103958 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 674 | Open in IMG/M |
| Ga0207625_104019 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 671 | Open in IMG/M |
| Ga0207625_104582 | Not Available | 633 | Open in IMG/M |
| Ga0207625_104859 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 617 | Open in IMG/M |
| Ga0207625_104896 | All Organisms → cellular organisms → Bacteria | 615 | Open in IMG/M |
| Ga0207625_105026 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 608 | Open in IMG/M |
| Ga0207625_105101 | All Organisms → cellular organisms → Bacteria | 604 | Open in IMG/M |
| Ga0207625_105404 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 590 | Open in IMG/M |
| Ga0207625_106037 | All Organisms → cellular organisms → Bacteria | 562 | Open in IMG/M |
| Ga0207625_106399 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 547 | Open in IMG/M |
| Ga0207625_106889 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 529 | Open in IMG/M |
| Ga0207625_106973 | Not Available | 527 | Open in IMG/M |
| Ga0207625_107297 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 516 | Open in IMG/M |
| Ga0207625_107717 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207625_100041 | Ga0207625_1000414 | F018099 | MARAYIADIAGGTATVTIQAQGTQTLKSATFTWTPAAAGKYELSYSSTSQIGTAQPDANVIARVSIGVLTSGGSAGVQMPISMPVKAFQSIYVHCTGAGNLGTVTLS |
| Ga0207625_100104 | Ga0207625_1001042 | F009373 | MSRTLKAIERHMTQPSKSEVVDPSTAKLVGEWQQRGPETFSGYALRKLRLAFAPSQSTKLATVNR |
| Ga0207625_100299 | Ga0207625_1002991 | F015162 | MPSAEEPRKTSAISAQIFDLLKVGITLALTGLIGGGITYYYQERAHRAQQEQADLATARQSALTFLREVGDILEQRRHFALRVLDTIQENAPPEERDQVWKDYINAVNAWNVKWNLYRALVLEQFGPEMQKRFYDEKADSEATWANYSITGKLMSFHNALEDLHNPTPDKPPPDAKAMEKLYSSISQDTYGFYSEVIARIQEGRIGKQSWTAGNTQNDHSDAH |
| Ga0207625_100727 | Ga0207625_1007273 | F033545 | VITRKNGGRGRDLLVTLFDQLIENSGAGAETGFDLGEGMVPIGLADDKIGRALQQRQERNQEKEEPATETAESKFQR |
| Ga0207625_100782 | Ga0207625_1007821 | F044168 | QDKSKLFLWPKNFSTKKSSALIQIPSNFFAQLAIFACGGGDGFVIGRIGFVPGARAIGIEDDADANLTVFFLRESAARSDCDAEEKDKNEAAHDVLVGLGKVEGKVGEEKPKLRVERKVDRPLRRALLGIAAPPPN |
| Ga0207625_100809 | Ga0207625_1008091 | F001496 | MPIIEKTIRFAAIALAVLFIGLSLFGIFGAWFVDRKATDVALKGFGLIEVGIGVVDAGVGRVNDLIATSRTEVRQASETITAAGAQAQANSPVLNALNERLETSLAPRIAQMQQVLAPVRDAMGTVGNAVSLLNSMPMMADRAPRLAALDETFNRLEGLSADATQLRGTLRALVAEQKSNIAPETVAALKGITQRIDTRLGEVQANIDGVQADITALHVRLDTRKSRLLFVFNLVALLSTLMLAWIIYTQVVVIRHHWARVRPPRPDRHPATMS |
| Ga0207625_101009 | Ga0207625_1010091 | F029253 | AADLCFVVAGVGRISLQSSAKLLDQLRVRIGEVLDPLASKPSVVALEAIREIA |
| Ga0207625_101074 | Ga0207625_1010743 | F093675 | MAPFIAIVLSIGIMIAFGIAAAIWGSDSRPTYGDDHAR |
| Ga0207625_101282 | Ga0207625_1012821 | F022090 | GTSVNLLDVLPGVGGPAWNIFITGDGNATGTLFSLKSVTFDEDSLTLIGRGTTQIISSDPLVGDPFVLKHSAARIVIQGTGQDFTYNNLTVVTTAVIPEGGSGLGLLAIGLVAVEGLRRKIATRQNRYA |
| Ga0207625_101364 | Ga0207625_1013641 | F078471 | MTLDLIGKKVIVINEKHSIWRAIAEAVAREGADVVIWLRNGDDELKEAKVLSTTQ |
| Ga0207625_101364 | Ga0207625_1013642 | F011085 | MNAEKSENASDGSNGRTLKIRVAAAGTLKESGQLLLTDPVSQEARNLEIARIAYKLLQTEEHDLAVQRRRDDLARLLIRIRRGEAGYAQVKKFFDENQGLPPETEG |
| Ga0207625_101704 | Ga0207625_1017041 | F005688 | MKNRNPLISHLRTSFCALVIVGALLALPRAEASGPPLPARGEFFACFKYAAPPRQVGENLIIMFNISGTLTDTFTGSFVGTELDVVHRDGSITKHGSFVFTGSVTGRSGTGTLHVTFEGIGNAVTGHEVLRVVSREGTGSLAGVYAELTAEGDVGAPEPGCN |
| Ga0207625_102020 | Ga0207625_1020202 | F103330 | MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQL |
| Ga0207625_102063 | Ga0207625_1020632 | F064599 | MIMIVAVLATGLGLGACAQHKEVVVPPPQKKGYGK |
| Ga0207625_102480 | Ga0207625_1024802 | F008640 | MDETTRSRIRHIFLSPRPNFALMTAADLLGMTLKELKREIEDGAIVAVWTALGERMTREELVAVAMQTWEQSVIEAALGKDAASVLPEAIRLVELRARVPRYQRDVLRALARREGTSVDTVLARELEGVASAHAEELAAAVPGFEAALAWG |
| Ga0207625_102488 | Ga0207625_1024883 | F073610 | KGISFSEKERCFQDVLAEVMRVIADLPEKDKGAISKSWLEKISRLYLEAKVEQGDWSGAWMEIARRVVSDPRRLKASLKMVREILSRPGHT |
| Ga0207625_102547 | Ga0207625_1025471 | F008836 | GTIASESSVGRYTFSADKYCEWIVYTIRNNLDKPGVTNESPAVTDHCTPVSSKDGRFSFSPPGEGVEVSFGPDGFTAKIGGEFVDHWRKIR |
| Ga0207625_102590 | Ga0207625_1025901 | F077601 | SSLLRDRRIRQVVGAILTALLVLAVWKFIDWRMTPPPPPNSFATPAAKP |
| Ga0207625_103076 | Ga0207625_1030761 | F006680 | MKISKFLWSVLVAFAAVALIAPQQVEAIVVDGRIKGQIQFTGSGTVTESTGINSNAINSNGINELEFNGENFPHGPLSVTGGTGDFIPFVGS |
| Ga0207625_103512 | Ga0207625_1035121 | F099258 | VILAVGLVLAFAGTASSTIGWGKQHGIPGAYSWNYGGSLDFSGTPADPSFKLHDMFVSDAATPQAAYITSSHDGITWTNPRRLSGRVVNAEGTTLAAAGTRIVVGWVTGFSAYDPA |
| Ga0207625_103731 | Ga0207625_1037311 | F080568 | NGGLPADNAHWTTLSDAIVNAEKLIYASFVTITQTVGYAAGSEVPVFTKTYSQAGTGATFGTDYQAGDVAALIRYSTTARTSKNHPIYLFNYYHGVLGDGTNAGKPQATQVTAYGTYAAAWLAGFSDGTNTYVRAGPNGATATGQLVETYLTHRDLVH |
| Ga0207625_103958 | Ga0207625_1039581 | F105615 | MVGWRNDFGLVQSGNSDIDFISVGLAHESQRAAARRTETADAPGAFNFTRLTFRELKIVPPKRSPCRKRRSGVLATIFAMAMRDVVGLTDAFVSNGAAQATAANGR |
| Ga0207625_104019 | Ga0207625_1040191 | F040565 | TVLPWFIMFPSQGFGWLGRDASGDAHLARVSLFNHIIFGLGIALWMAVIRPI |
| Ga0207625_104019 | Ga0207625_1040192 | F020069 | MTIKMHLSRSLVAFFLLNAGVVFAGEFKSSVITTSALAITVPGDRFLRITNFTQEGGTDRGVARVTLGGEAGGTANVLAATRIDFSTGINSQNFPEINNQAIIAGPAEVRIAPVMGATLLITYKKVPNEGGGGE |
| Ga0207625_104085 | Ga0207625_1040852 | F007788 | MPHERPTIIVVHRDDHGCLITLLLVIIAWPLAVVYWVIRLAWWLVATAFDWLTLGPLRRRLP |
| Ga0207625_104582 | Ga0207625_1045822 | F059436 | MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEAVPGVGSGRGTQERGQSKRPRIAAGRAVTPVGSKRSTGGGRPRAVWQRRRATSG |
| Ga0207625_104859 | Ga0207625_1048592 | F056809 | VTNRRMTVSQASAWQEALAAAEAGVHQGIAQLEQGLAQNSLPLAGPSPIAWSSPFPSGTATSTSTRVYLGHAGEGPSGPSNSYADYTLTLNENTTQTIPRPYYCIVSVGTVGLPGGKALGMDSADAVLRKLNL |
| Ga0207625_104896 | Ga0207625_1048961 | F098129 | MRKQEAILLDNPGLSIEGKKIARILGFFGVPWRALTTTKLLAHNGADRESSSKCRLMSTSDTLLQLLNDLERDPAFMQFWEEQVHSAFVYAGDDSEILRKLIRRLTGDNGIVISKINPGVGDLTVSDQLDDFCKVMAGVRTAASKADFDTSLIFNTPKESTINIISLGH |
| Ga0207625_105026 | Ga0207625_1050261 | F012304 | MPYLREQESVANVNEAQINGDEKLVLAQLIVSAAPLFYALLPCSEQKMLTLVAEQIGEPGTELQNTYVLRHGGRVSSILSAVGDNQITTARLGSSMNFIRKLERSERACYMSNIKRYAKELEPIDKPGTYIARLATTPGSNTAGAGARLLKWFLLSSGPGLYTCHVHKDNS |
| Ga0207625_105101 | Ga0207625_1051012 | F013826 | MAVCWRCPTCGEVSCEDDVNAAGKPVACDACERPFPPQKTLCPLCDAPNPWTRRDTLHFLCTECGTTQTFFSHLPMAG |
| Ga0207625_105404 | Ga0207625_1054042 | F040398 | NVKVLAKGGSAVPKFIRLCVATSSKVLAERRDDLVKFIAAEMDAYKYAAAHRDETVKVAHELTNAKPDDKRADFIVDQAIREKQIDPTLAIPVDRIDWMQQLFVKAGVIPKSVASSTLIDTSVRDDAAKLAAQ |
| Ga0207625_106037 | Ga0207625_1060372 | F040874 | MQRSAIYFKRHKGSKGRAALFRQLRASPANQTRDVQQQMFGNGYILQGLPSGQLLLKGFA |
| Ga0207625_106399 | Ga0207625_1063992 | F016464 | IAGKKIEPVMWPFHTPDDSVKRQRNDHPKDAAPRRCGHAQFAATSTERQQIDPNGDEHANVKEDPEPDARRHAGQSFMRKAVRQSQIARRADANYTSQGRTCPHKWILN |
| Ga0207625_106889 | Ga0207625_1068892 | F013827 | MGRFGRLLFSLAIIGIGVETLICSYLSAHKVVPVIPWLPAIPSLTYPVGAILILCGAGLLFQRTLVVSSITLGVLMVLCGLAFDVPRRPDLTSAEWRTNVLEPIAIGSLAWLAP |
| Ga0207625_106973 | Ga0207625_1069731 | F033498 | VDARPAPNDYDDEPWELAAAYRITLWEQPARPPNFDRPASGPEPFPGALVGWEEMTFELAGAQDVREVIQWAETALASGEGPASRRGVPVQDREYVIQAKAQSEDRWLHVAGWIPVLPSD |
| Ga0207625_107297 | Ga0207625_1072971 | F053430 | KLFIGPSSSSVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFGT |
| Ga0207625_107717 | Ga0207625_1077172 | F076538 | MATYSGNASLSQAVKDRVLSTFQQAVTLYKQGRSAEVMEGCTLILRMDPTFDPARKLLEKTRNPNAAIDVDSLMPESGSGALREAH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |