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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027446 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072029 | Ga0207562 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-10 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 48164349 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003755 | Metagenome / Metatranscriptome | 470 | Y |
| F003815 | Metagenome / Metatranscriptome | 467 | Y |
| F009543 | Metagenome / Metatranscriptome | 316 | Y |
| F013908 | Metagenome / Metatranscriptome | 267 | Y |
| F014399 | Metagenome / Metatranscriptome | 263 | Y |
| F027173 | Metagenome / Metatranscriptome | 195 | Y |
| F030490 | Metagenome / Metatranscriptome | 185 | N |
| F031088 | Metagenome / Metatranscriptome | 183 | Y |
| F031184 | Metagenome | 183 | Y |
| F038260 | Metagenome / Metatranscriptome | 166 | N |
| F041300 | Metagenome / Metatranscriptome | 160 | Y |
| F048402 | Metagenome | 148 | N |
| F051317 | Metagenome / Metatranscriptome | 144 | Y |
| F077469 | Metagenome / Metatranscriptome | 117 | N |
| F091557 | Metagenome / Metatranscriptome | 107 | N |
| F097297 | Metagenome / Metatranscriptome | 104 | Y |
| F104690 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207562_1000583 | Not Available | 964 | Open in IMG/M |
| Ga0207562_1001958 | Not Available | 759 | Open in IMG/M |
| Ga0207562_1002199 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 739 | Open in IMG/M |
| Ga0207562_1002970 | Not Available | 692 | Open in IMG/M |
| Ga0207562_1003264 | Not Available | 678 | Open in IMG/M |
| Ga0207562_1004474 | Not Available | 630 | Open in IMG/M |
| Ga0207562_1004504 | Not Available | 629 | Open in IMG/M |
| Ga0207562_1004813 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album | 619 | Open in IMG/M |
| Ga0207562_1005723 | Not Available | 592 | Open in IMG/M |
| Ga0207562_1006807 | Not Available | 567 | Open in IMG/M |
| Ga0207562_1007374 | Not Available | 557 | Open in IMG/M |
| Ga0207562_1008502 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 537 | Open in IMG/M |
| Ga0207562_1009398 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 523 | Open in IMG/M |
| Ga0207562_1009487 | Not Available | 522 | Open in IMG/M |
| Ga0207562_1009909 | Not Available | 515 | Open in IMG/M |
| Ga0207562_1010518 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207562_1000583 | Ga0207562_10005831 | F031088 | AIGAFSANAQVVIEERRDPAVVIEHDRPNTSVTVEKRDGFLGTEKKTITKETTGSGDCSSKTVHKEDITGSKTVQKTNCD |
| Ga0207562_1001958 | Ga0207562_10019583 | F003755 | MNATVIELPTVESLSDEIRGVVYERQTLRSVGAGREELERNRAELVRLQQALVNALIRRHLPANAA |
| Ga0207562_1002199 | Ga0207562_10021991 | F097297 | LPVPKGAWTMLVTERMRSLGDHAKSSRQPPLKERKLTKSDASAATQDVINEKEFKKGAAHESAAVVIVDNPAPQTVVHENRNAAVAEITPDEEAAVLATVAAVLAKIDPQPPTADDNVTRPEPVREDAELSAAKRAIIHEWESWSALHSDELGDPKVAEYFFRHLQTKKPQLLNFGFQDKLMMVRRCLVD |
| Ga0207562_1002970 | Ga0207562_10029701 | F030490 | VFSVAGPAPARSVVALMRLEPFVRAEIDWTISPSESPFWVGSVGELQDELFDATASRFLDLYWSEDNPSVRPDLEAAFRDMVSFAEDELPGATPAQNEDARHLLSALGSGGYVWRVAESTARTTDLNLRADLVKEVEAVVASFPDSEPEERLLAWAATECVNRNLLFGSASPGGWAAGGEFLRRGFRFAEGHVFSEDVALPPKDQWYAFSFGVALYDVDAFLATRPPRAA |
| Ga0207562_1003264 | Ga0207562_10032642 | F041300 | MWNQWTRTRLLPLRVGEGWLPFFSAVDYRRYAAECVRLAQQVADPDDKVRLLDMAETFRELADKNDARHSGTPDD |
| Ga0207562_1004474 | Ga0207562_10044742 | F014399 | KRTWEAMMDPVEGQARAIIAAALIIRGAVEVPAIPTATQRVPDAGGMRLRELTDYVYRLLTTDGR |
| Ga0207562_1004504 | Ga0207562_10045042 | F038260 | MGSEDMGRQPEELRVAQERELAAGFALASMEHALAREAFHVGLALRAAGVELDARTFVALRILEVCVAELIDPSHALGELVENGSLERS |
| Ga0207562_1004813 | Ga0207562_10048132 | F048402 | VPELGRAALVVAFGLFLTMVTALQWIAVVLVLASIVVLMWTLWTGGREVDRE |
| Ga0207562_1005723 | Ga0207562_10057232 | F104690 | VGLIATALIAGGCANAPSLDFGTPVNLHVTTTPTSVELDAPGWLADISAVYLCPSEPARLPDNAAERVNWTPGPDCEFMGSYPSRDGLKLSMPLSGLQPERRPKFDAAADWYVVLLDLDGDRVSAAINSQFHAPAASPAS |
| Ga0207562_1006807 | Ga0207562_10068071 | F013908 | VRYEDVSPDNWEIGRNWFTEDYLPVAMQTDGFCGAYLLHDDERSCTVSVTLWTDAETEAASGEAVQNHLDAWEHMTGIKASVETYEVVFAELPARTL |
| Ga0207562_1007374 | Ga0207562_10073742 | F091557 | LDMSTPDIAQRLDGAIDVSVVGETSVVRDLREPDTAAHESMNDIPMQFVRLGLPATIFLWFVFVLVAYGAYRFFAG |
| Ga0207562_1008502 | Ga0207562_10085021 | F051317 | DFGASGDRFPDSADFKEAKDAAGMPDSTGGFAYIDVKDVLPLLEGLAALSGKGLPSDVTENLRPLRSFLAWSEGRPDSRTYDAFLQIK |
| Ga0207562_1009398 | Ga0207562_10093982 | F027173 | MANSARLGGLVGLAGLAGLAAALLAGGVAKPEIGALPVFVLVSLSL |
| Ga0207562_1009487 | Ga0207562_10094872 | F077469 | VPELSVSEVAIAGGTSEEMVEELTRLGVISPRNGGFRPSDVRRVRLVLALATSGVPLEAVGDAIREGRISFDFIDELAPNPIPLLPETQTELVARLGLSDELAHGLGTILGTCSLPPDQQVRTDHAEL |
| Ga0207562_1009909 | Ga0207562_10099091 | F031184 | MADLPKLNVVIANNFGHLPMFVGAEKGFFKRHGVDASFRVVD |
| Ga0207562_1010518 | Ga0207562_10105181 | F009543 | IWLMAMLAAAMFGVVRHTDVLHRAGLTGYCTTAPHPAGTTGHWRVCEKGVLNGRPDLSRQRCTRRGQDGSVEYWRCPARVRSAALG |
| Ga0207562_1010518 | Ga0207562_10105182 | F003815 | VLREVAEYPNCFGPLGPGAERIETDRYTLCLGPGSTWNTVQRQRFALEELDEVLEEVRAHLRDRNRTQTQWEVGSSAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |