3300027423: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-10 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027423
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072026 | Ga0207544
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-10 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15897233
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F001757	Metagenome / Metatranscriptome	641	N
F052215	Metagenome / Metatranscriptome	143	Y
F097727	Metagenome / Metatranscriptome	104	Y
F105458	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207544_100100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805
Ga0207544_100260	Not Available	663
Ga0207544_100661	Not Available	553
Ga0207544_100761	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207544_100100	Ga0207544_1001002	F001757	TVAQPGVTHKAKAMMRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGLAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV
Ga0207544_100260	Ga0207544_1002601	F105458	MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFFARHD
Ga0207544_100661	Ga0207544_1006612	F052215	VQLDGENSARTTSFEFRSLPPGTYEVRANLLGTRGEQRATVRQQINVMASGARDR
Ga0207544_100761	Ga0207544_1007611	F001033	RRFMNFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVVHAEGPDSTAGTSSADTRKLVIDPSSASVALWKASLIVSPLTYQDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSSDRGSVTFSIVT
Ga0207544_100886	Ga0207544_1008862	F097727	SNLPAPQKQDAHVIVYTLQVENSRNTLHLTRNLSVDFLLLDPKYYGALRNFFQVVRTSDEEQIVLQPGTASAAN