Metagenome / Metatranscriptome Family F052215

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052215
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	70 residues
Representative Sequence	AVQIIAESADFYRSSEIQLEGDKAPRTSMFEFRSLPPGTYEVRALLLGSGGQQRAFARQQVNVIPSGAGH
Number of Associated Samples	125
Number of Associated Scaffolds	143

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.55 %
% of genes near scaffold ends (potentially truncated)	87.41 %
% of genes from short scaffolds (< 2000 bps)	85.31 %
Associated GOLD sequencing projects	116
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.112 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (9.790 % of family members)
Environment Ontology (ENVO)	Unclassified (30.070 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.049 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.06% β-sheet: 33.67% Coil/Unstructured: 63.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
b.1.2.0: Fibronectin type III	d3r8qa1	3r8q	0.73
b.1.2.0: Fibronectin type III	d3r8qa1	3r8q	0.73
b.2.5.2: p53-like transcription factors	d1t4wa_	1t4w	0.71
b.2.5.2: p53-like transcription factors	d1t4wa_	1t4w	0.71
b.1.2.1: Fibronectin type III	d1fnfa1	1fnf	0.7
b.1.18.7: E set domains	d1nepa_	1nep	0.7
b.1.2.1: Fibronectin type III	d1fnfa1	1fnf	0.7
b.1.18.7: E set domains	d1nepa_	1nep	0.7
b.1.2.0: Fibronectin type III	d2dbja1	2dbj	0.68
b.1.2.0: Fibronectin type III	d2dbja1	2dbj	0.68

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 143 Family Scaffolds
PF00005	ABC_tran	22.38
PF06689	zf-C4_ClpX	8.39
PF05157	T2SSE_N	4.90
PF00664	ABC_membrane	3.50
PF03992	ABM	2.10
PF02687	FtsX	1.40
PF13620	CarboxypepD_reg	1.40
PF07676	PD40	1.40
PF07495	Y_Y_Y	1.40
PF12704	MacB_PCD	0.70
PF11716	MDMPI_N	0.70
PF00491	Arginase	0.70
PF14905	OMP_b-brl_3	0.70
PF03484	B5	0.70
PF06723	MreB_Mbl	0.70
PF01326	PPDK_N	0.70
PF00766	ETF_alpha	0.70
PF02397	Bac_transf	0.70

COG ID	Name	Functional Category	% Frequency in 143 Family Scaffolds
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.40
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.70
COG0072	Phenylalanyl-tRNA synthetase beta subunit	Translation, ribosomal structure and biogenesis [J]	0.70
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	0.70
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	0.70
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.70
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.11 %
Unclassified	root	N/A	11.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.11 %
Unclassified	root	N/A	11.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.11 %
Unclassified	root	N/A	11.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	71.33 %
Unclassified	root	N/A	11.89 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	41.96 %
Unclassified	root	N/A	11.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.40 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.70 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	41.96 %
Unclassified	root	N/A	11.89 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.70 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	41.96 %
Unclassified	root	N/A	11.89 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.70 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	41.96 %
Unclassified	root	N/A	11.89 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.70 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	41.96 %
Unclassified	root	N/A	11.89 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.70 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	41.96 %
Unclassified	root	N/A	11.89 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.70 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	41.96 %
Unclassified	root	N/A	11.89 %
Arthrobacter sp. KBS0703	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. KBS0703	0.70 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459004\|F62QY1Z02FHRTD	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300000955\|JGI1027J12803_100442156	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1262	Open in IMG/M
3300000956\|JGI10216J12902_110259816	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300001686\|C688J18823_10039970	All Organisms → cellular organisms → Bacteria → Acidobacteria	3233	Open in IMG/M
3300002568\|C688J35102_118206331	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300004081\|Ga0063454_101504277	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300004114\|Ga0062593_102588112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300005179\|Ga0066684_10479872	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300005179\|Ga0066684_10673795	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300005187\|Ga0066675_10618780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300005288\|Ga0065714_10260987	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300005327\|Ga0070658_11065326	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300005329\|Ga0070683_102023947	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300005334\|Ga0068869_101832400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300005364\|Ga0070673_101101856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300005366\|Ga0070659_101837149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300005445\|Ga0070708_100866664	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300005445\|Ga0070708_101341319	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300005457\|Ga0070662_101419685	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300005458\|Ga0070681_11921763	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300005467\|Ga0070706_101338320	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300005529\|Ga0070741_10065138	All Organisms → cellular organisms → Bacteria	4181	Open in IMG/M
3300005529\|Ga0070741_10950389	Not Available	740	Open in IMG/M
3300005535\|Ga0070684_101102013	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300005536\|Ga0070697_100807376	All Organisms → cellular organisms → Bacteria → Acidobacteria	830	Open in IMG/M
3300005538\|Ga0070731_10594119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	737	Open in IMG/M
3300005539\|Ga0068853_102245743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300005540\|Ga0066697_10369149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	835	Open in IMG/M
3300005543\|Ga0070672_101810798	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300005545\|Ga0070695_101614904	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300005552\|Ga0066701_10952118	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300005556\|Ga0066707_10542176	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300005617\|Ga0068859_100830579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1010	Open in IMG/M
3300005719\|Ga0068861_100095523	Not Available	2354	Open in IMG/M
3300005764\|Ga0066903_105654015	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300005764\|Ga0066903_108074720	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300005764\|Ga0066903_109144664	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300005834\|Ga0068851_10639865	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005840\|Ga0068870_10847321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300005842\|Ga0068858_102493767	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300006034\|Ga0066656_10636303	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300006163\|Ga0070715_10879875	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300006794\|Ga0066658_10523145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300006806\|Ga0079220_11494485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300006852\|Ga0075433_10780929	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300006904\|Ga0075424_100826662	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300006904\|Ga0075424_100873849	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300007076\|Ga0075435_100974833	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300007076\|Ga0075435_101003732	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300007076\|Ga0075435_101496792	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300009038\|Ga0099829_10257056	All Organisms → cellular organisms → Bacteria → Acidobacteria	1425	Open in IMG/M
3300009098\|Ga0105245_11986494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300009100\|Ga0075418_11435919	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300009137\|Ga0066709_100071861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4069	Open in IMG/M
3300009137\|Ga0066709_100912872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1281	Open in IMG/M
3300009137\|Ga0066709_101655071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300009137\|Ga0066709_104184207	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	525	Open in IMG/M
3300009148\|Ga0105243_13010778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300009156\|Ga0111538_10909922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1114	Open in IMG/M
3300009174\|Ga0105241_11223896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300009553\|Ga0105249_10523243	All Organisms → cellular organisms → Bacteria → Acidobacteria	1234	Open in IMG/M
3300009649\|Ga0105855_1043891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1247	Open in IMG/M
3300009651\|Ga0105859_1038922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1203	Open in IMG/M
3300009660\|Ga0105854_1388063	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300010145\|Ga0126321_1216946	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300010362\|Ga0126377_13459148	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300010362\|Ga0126377_13506481	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300010371\|Ga0134125_10454374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1420	Open in IMG/M
3300010373\|Ga0134128_11573091	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300010400\|Ga0134122_11005528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300011270\|Ga0137391_11031856	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300012096\|Ga0137389_11551438	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
3300012200\|Ga0137382_10632110	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300012207\|Ga0137381_10935679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300012212\|Ga0150985_120280697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300012353\|Ga0137367_10226991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1347	Open in IMG/M
3300012469\|Ga0150984_112493695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1445	Open in IMG/M
3300012469\|Ga0150984_113769734	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300012893\|Ga0157284_10279269	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300012927\|Ga0137416_10088282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2301	Open in IMG/M
3300012944\|Ga0137410_11738690	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300012987\|Ga0164307_10634597	All Organisms → cellular organisms → Bacteria → Acidobacteria	828	Open in IMG/M
3300012989\|Ga0164305_10749611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300012989\|Ga0164305_10815369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300013297\|Ga0157378_12586935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300015371\|Ga0132258_12238321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1372	Open in IMG/M
3300015372\|Ga0132256_101627598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300015374\|Ga0132255_104342848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300018076\|Ga0184609_10119676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1196	Open in IMG/M
3300018083\|Ga0184628_10636650	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300018468\|Ga0066662_12317953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300020034\|Ga0193753_10291822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300021078\|Ga0210381_10195552	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300022756\|Ga0222622_10085732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1896	Open in IMG/M
3300023263\|Ga0247800_1058470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300024219\|Ga0247665_1011837	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300025321\|Ga0207656_10270311	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300025906\|Ga0207699_10570553	All Organisms → cellular organisms → Bacteria → Acidobacteria	822	Open in IMG/M
3300025912\|Ga0207707_11570784	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300025918\|Ga0207662_10922001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300025919\|Ga0207657_11309783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300025926\|Ga0207659_10149938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1820	Open in IMG/M
3300025930\|Ga0207701_11396958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300025934\|Ga0207686_10860264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300025938\|Ga0207704_10003265	All Organisms → cellular organisms → Bacteria → Acidobacteria	7358	Open in IMG/M
3300025940\|Ga0207691_11285822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300025942\|Ga0207689_10931332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. KBS0703	733	Open in IMG/M
3300025944\|Ga0207661_11442489	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300025961\|Ga0207712_11142072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300025972\|Ga0207668_11266349	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300026041\|Ga0207639_10340064	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300026088\|Ga0207641_10523937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1153	Open in IMG/M
3300026089\|Ga0207648_10320653	All Organisms → cellular organisms → Bacteria → Acidobacteria	1392	Open in IMG/M
3300026298\|Ga0209236_1311969	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300026552\|Ga0209577_10842327	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300027423\|Ga0207544_100661	Not Available	553	Open in IMG/M
3300027523\|Ga0208890_1044582	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300027682\|Ga0209971_1065751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	879	Open in IMG/M
3300027821\|Ga0209811_10122848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	947	Open in IMG/M
3300028819\|Ga0307296_10691179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300031538\|Ga0310888_10639737	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300031547\|Ga0310887_10118409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1342	Open in IMG/M
3300031740\|Ga0307468_101784116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300031769\|Ga0318526_10051792	All Organisms → cellular organisms → Bacteria → Acidobacteria	1568	Open in IMG/M
3300031819\|Ga0318568_10451025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300031820\|Ga0307473_11353671	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300032013\|Ga0310906_10212211	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1182	Open in IMG/M
3300032059\|Ga0318533_10081967	All Organisms → cellular organisms → Bacteria → Acidobacteria	2202	Open in IMG/M
3300033412\|Ga0310810_10477279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1251	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.13%
Host-Associated	Host-Associated	32.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.64%
Plants	Host-Associated → Plants	32.87%
Aquatic	Environmental → Aquatic	3.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.59%
Sediment	Environmental → Aquatic → Sediment	2.10%
Freshwater	Environmental → Aquatic → Freshwater	1.40%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.15%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.10%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.10%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.70%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.10%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.10%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.10%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.10%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.70%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.50%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.10%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.10%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.10%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.40%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.40%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.40%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.70%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.70%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.70%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459004	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm (2)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300024219	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027423	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-10 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4B_00628850	2170459004	Grass Soil	EDFYRSSMIQLEGDKAARTTMFEFRSLPPGTYEVRANLYGSNGAPRATIRQQVNVIASGNGDR
JGI1027J12803_1004421561	3300000955	Soil	SETFYRSSEIQLEGDRGPRTSRFEFRSLPPGTYEVRATLRGSHGEDRSTMRQQINVIASGAGH*
JGI10216J12902_1102598161	3300000956	Soil	VAESNDFYRSSEIELDGENAPRTNTFEFRSLPPGTYEVRVTLRGGGGEQIANVRQQVNVIDAGGAK*
C688J18823_100399703	3300001686	Soil	VRAIVEADARNRAVEIVAESTDFYRSSQIQLEGDKAPRMSQFEFRSLPPGIYEVRASLIGDDGQQRGIVRQQVNVIAVGSGDHD*
C688J35102_1182063311	3300002568	Soil	IVAESQDFYRSSEMQLEGDKAARTTMFEFRSLPPGTYEVRAKLLGADGQARAAVRQQVNVIAAGAGDRF*
Ga0063454_1015042772	3300004081	Soil	FYRSSEMQLEGDKAARTTMFEFRSLPPGTYEVRAKLFGADGQARAAVRQQVNVIAAGAGDRF*
Ga0062593_1025881121	3300004114	Soil	RENRAVAVIAESPEYYRSSEIQLNGENAARTTTFEFRSLPPGSYQVKALLLDSTGQERAAAFQQVNVIASGGAR*
Ga0062589_1002880651	3300004156	Soil	SEIQLDGDRAPRTSLFEFRSLPPGSYEVTATLRGSSGVERATVSQQVNVIATAGQ*
Ga0066684_104798721	3300005179	Soil	YRSSEVGLEGEDAPRTTTFEFRGLPTGTYEVRATLLGAGGQQRAIARQQVDVIASPKER*
Ga0066684_106737952	3300005179	Soil	DFYRSSEIQLEGERAARTNMFEFRSLPPGTYDVSARLIGTGGERAQVHQQVNVIASGTGH
Ga0066678_107440772	3300005181	Soil	DGDKAPRTNRLEFRSLPPGSYEVKATLLDASGHSRANVRQQINVIASGSDPGR*
Ga0066676_100488141	3300005186	Soil	SSEIELDGENAPRTNMFEFRSLPSGTYEVRVTLRGGGGEQLANVRQQVNVIEAGGAK*
Ga0066675_106187802	3300005187	Soil	IVAESADFYRSSEIQLEGDRAARTTTFEFRSLPQGTYEVRAKLFGADGQQRAAVRQQVNVIATGQGERY*
Ga0065714_102609871	3300005288	Miscanthus Rhizosphere	NDFYRSSMVQLEGDRSARTSLFEFRSLPPGRYEVRAHLLGARGEQRATVRQQVNVMASGSADR*
Ga0070658_110653261	3300005327	Corn Rhizosphere	SMVQLDGDHAARTSQFEFRSLPPGTYEVRANLYGANGAPRASIRQQVNVIASGAGDR*
Ga0070683_1020239472	3300005329	Corn Rhizosphere	VEIIAESQDFYRSSMVQLDGENAARTSSFEFRSLPPGTYEVRANLLGVRGEQRASVRQQINVIASGAGDR*
Ga0068869_1018324002	3300005334	Miscanthus Rhizosphere	IEIVAESEDFYRSSEIQLEGDRAARTTMFEFRSLPPGTYEVRANLFGSNGQSRALIRQQVNVLASGSSGQ*
Ga0070673_1011018561	3300005364	Switchgrass Rhizosphere	EIVAESADFYRSSQIQLEGDKAPRTTNFEFRSLPPGTYEVRALLIGTGGGQRAFARQTINVIASGAGH*
Ga0070659_1018371492	3300005366	Corn Rhizosphere	EDFYRSSMIQLEGDRAARTSLFEFRSLPPGTYEVRANLFGAGPAPRETIRQQINVMASGAAER*
Ga0070705_1011455891	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	TEFYRSSEIELDGENAPRTNLFEFRSLPSGTYEVSVTLRGGDGHSLAHVRQQVNVIEAGGAK*
Ga0070708_1005735603	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ATIEADSENRAVVVTADSADFYRASEMQLNGEQAPRTNTFEFRSLPPGSYEVRAILIGSSGRPRGTVRQQVNVISSGGGDR*
Ga0070708_1008666642	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TIEADAANRAVEVVAESSEFYRSSEIELDGERAPRTNMFEFRSLPSGTYEVRVTLRAGDGHSLANVRQQVNVIEAGGTR*
Ga0070708_1013413192	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VRAMIEADPLNRAVTIIAESDDFYRSSEIQLEGDKAPRTTTFEFRHLPSGSYEVRARLLGADGQERGYVRRSINVISSAAGR*
Ga0070662_1014196851	3300005457	Corn Rhizosphere	VQLEGDKAPRTSRIEFRNLPPGTYDVRVMLLDSGGQQRASARQQVNVIASAAGH*
Ga0070681_119217631	3300005458	Corn Rhizosphere	ATIQADSQNRAVEIVAESTEFYRSSEVELDGENAPRTSMFEFRSLPPGTYEVSATLRASDGRPLAHVRQQVNVIEAGGTR*
Ga0070706_1013383201	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AVEVVAESNDFYRSSEIELDGENAPRTNMFEFRSLPSGTYEVRVTLRGGGGEQLANVRQQVNVIEAGGAK*
Ga0070698_1014995462	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	ADSADFYRASEMQLNGEQAPRTNTFEFRSLPPGSYEVRAILIGSNGRPRGTVRQQVNVIASGGGDR*
Ga0070741_100651385	3300005529	Surface Soil	VVAESTEFYRSSEIELDGARAPRTSLFEFRSLPPGTYEVRATLRAVDGHSLANVRQQINVIDSGGTR*
Ga0070741_109503891	3300005529	Surface Soil	QLDGDKAPHTTVFEFRSLPSGTYEVTANLIGANGRTRAFVHQEVNVIAAGGGH*
Ga0070684_1011020132	3300005535	Corn Rhizosphere	AFAPANLVVRAMVIADPDNRAIEIVAESADFYRSSMIELEGDKAARTSQFEFRSLPSGTYEVRANLYGSHGEQRASIRQQVNVIASGAGER*
Ga0070697_1008073762	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	YRSSEIQLDGERAPRTTTFEFRSLPPGTYEVKATLLGPGGAPRASVRQQVNVIASGAGQ*
Ga0070731_105941192	3300005538	Surface Soil	ITADTHNRAIEVSADSGDFFRSSSIELEGERAPRTNVFEFRSLPPGNYEVRAVLIGDDGRQRALARQEVSVIASGGSER*
Ga0068853_1022457432	3300005539	Corn Rhizosphere	DFYRSSMIQLEGDKAARTSQFEFHSLPPGIYEVRANLYGSNGAQRATIRQQINVISSGTRER*
Ga0066697_103691491	3300005540	Soil	FYRSSEIQLEGDRAARTTTFEFRSLPQGTYEVRAKLFGADGQQRAAVRQQVNVIATGQGERY*
Ga0070672_1018107981	3300005543	Miscanthus Rhizosphere	VQIVAESADFYRSSEVQLEGDKAPRTSMLEFRNLPPGSYEVRALLFGADGRQRAYARQQVNVIVSGAGH*
Ga0070695_1016149041	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	EIVAESTEFYRSSEVELDGENAPRTSMFEFRSLPPGTYEVSATLRASDGRPLAHVRQQVNVIEAGGTR*
Ga0066701_109521181	3300005552	Soil	FAPANLIVRAMVVADADNRAVEIVAESEDFYRSSMIQLEGDKAARTSQFEFRSLPPGRYHVKATLLGSDGRARAAVRAEMNVIASGGR*
Ga0066707_105421761	3300005556	Soil	PAVSFAPANLVVRATIEADSANRAVEVVAESSEFYRSSEIELDGENAPRTNMFEFRSLPSGTYEVRVTLRAGDGHQLANVRQQVNVIESGGTR*
Ga0068859_1008305792	3300005617	Switchgrass Rhizosphere	QDFYRSSTVQLDGDKAARTSNFEFHSLPPGTYEVRANLLGSRGEQRATVRQQVNVIATGAGDR*
Ga0068861_1000955232	3300005719	Switchgrass Rhizosphere	DKAPRTSRIEFRNLPPGTYDVRVMLLDSGGQQRASARQQVNVIASAAGH*
Ga0066903_1056540151	3300005764	Tropical Forest Soil	ADADNRAVEIVAESPDFYRSSEIQLEGDHAARTTTFEFRSLPPGTYEVRAKLFGAGGQQRAAVRQQVNVIATGQGERF*
Ga0066903_1080747202	3300005764	Tropical Forest Soil	VRAIVEANAANRAIEIVAESTDFYRSSEMQLEGEKAARTSTFEFRSLPPGTYEVRAKLLGANGQARASVRQQVNVMASGAWDKE*
Ga0066903_1091446642	3300005764	Tropical Forest Soil	SPVVGFAPVNLIVRASIVADADNRAVEIVAESRDFYRSSMIPLEGEKAPRTSQFEFRSLPSGVYEVRANLFGSNGTPRASIRQQINVMASGTGER*
Ga0068851_106398653	3300005834	Corn Rhizosphere	ADNRAVEIVAESDDFYRSSQVQLEGERAARTTMFEFRDLPSGTYEVRANLFGADGRSRAMIRQQVNVIANGRGEK*
Ga0068870_108473212	3300005840	Miscanthus Rhizosphere	SQIQLEGDKAPRTTNFEFRSLPPGTYEVRALLIGTGGGQRAFARQTINVIASGAGH*
Ga0068858_1024937672	3300005842	Switchgrass Rhizosphere	MIVADADNRAVEIVAESSDFYRSSEIQLEGDKAPRITQFEFRSLPPGTYEVRANLIGTGGQQRAFVRQQINVISGGAGQ*
Ga0066656_106363031	3300006034	Soil	AHRANRAVEVVAESNDFYRSSEIELDGENAPRTNMFEFRSLPSGTYEVRVTLRGGGGEQLANVRQQVNVIEAGGAK*
Ga0070715_108798752	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	APANLVVRATIPADADNRAVEIVAESEDFYRSSQIQLEGERAARTSMFEFRSLPPGTYEVRANLLGADGRSRSMIRQHVNVLASGAGDR*
Ga0066653_106705642	3300006791	Soil	EIELDGENAPRTNTFEFRSLPSGTYEVRVTLRGGGGQQLANVRQQVNVIEAGGAK*
Ga0066658_105231451	3300006794	Soil	QLEGEKAARTSTFEFRSLPPGTYEVRATLFGADGQQRAAVRQQVNVMASGGGDRY*
Ga0079220_114944852	3300006806	Agricultural Soil	IEIVAESEDFYRSSEMQLEGDTAPRTTTFEFRSLPPGTYEVRATLYDVSGDARAEVRQQVNVIASGAGDR*
Ga0075433_107809293	3300006852	Populus Rhizosphere	VAESPEFYRSSEIPLNGDRAPRTTMFEFRSLPPGVYEVKATLRGTSGERASVRQQVNVIASGAGQ*
Ga0075424_1002655531	3300006904	Populus Rhizosphere	ELDGENAPRTNMFEFRSLPSGTYEVRVTLRGGGGEQLANVRQQVNVIEAGGAK*
Ga0075424_1008266622	3300006904	Populus Rhizosphere	PANLVVRATIQADSENRAVEVVAESTEFYRSSEIELDGQNAPRTNMFEFRSLPSGTYEVRVTLRAGDGHSLAHVRQQVNVIEAGGAK*
Ga0075424_1008738491	3300006904	Populus Rhizosphere	FAPANLIVRATIEVDPDNRAVQIVAESPEFYRSSEIPLNGDRAPRTTMFEFRSLPPGVYEVKATLRGTSGERASVRQQVNVIASGAGQ*
Ga0075435_1009748331	3300007076	Populus Rhizosphere	ATIAADPDNRAVQIVAESTEFYRSSEIQLEGERAPRTSQFEFRSLPPGTYEVKAILRGASGERASVRQQVNVIGSGAGR*
Ga0075435_1010037321	3300007076	Populus Rhizosphere	AFAPANLVVRTTIEADADNRAIEIIAESPDFYRSSEIQLEGDKSARTTSFEFRSLPPGTYEVRAKLYGADGQARAAVRQQVNVIASGAGDRF*
Ga0075435_1014967921	3300007076	Populus Rhizosphere	DNRAVQIVAESPEFYRSSEIPLNGDRAPRTTMFEFRSLPPGVYEVKATLRGTSGERASVRQQVNVIASGAGQ*
Ga0099829_102570562	3300009038	Vadose Zone Soil	MEVVAESADFFRASTIQLEGDKAPRTNMFEFRSLPPGTYEVKATLIGSNGRARAYARQEINVMAGGGGR*
Ga0105245_119864942	3300009098	Miscanthus Rhizosphere	FYRSSQIELEGDKAPRTSTFEFRSLPPGTYEVRAMLLGAGGAQRAFARQTINVIASGAGH
Ga0075418_114359191	3300009100	Populus Rhizosphere	PANLVVRTMIEANQDNRAVEIIAESEDFYRSSQIQLEGDKAPRTTSFEFRSLPPGSYEVRALLFGADGEQRAFARQTINVIASGVGH*
Ga0066709_1000718613	3300009137	Grasslands Soil	VSFAPANLVVRATIQADAANRAVEVVAESIEFYRSSEIELDGENAPRTNTFEFRSLPSGTYEVRVTLRGGDGHQLANVRQQVNVIEAGGAK*
Ga0066709_1002150354	3300009137	Grasslands Soil	VELDGDKAPRTTQFEFRSLPPGLYAVRAILVGSDGHTRAAVRQDVNVIASGGAK*
Ga0066709_1009128721	3300009137	Grasslands Soil	QADAANRAVEVVAESPEFYRSSEIELDGQNAPRTNMFEFRSLPSGTYEVRATLRAGDGHPLAHVRQQVNVIEAGGNR*
Ga0066709_1016550711	3300009137	Grasslands Soil	ESTDFYRSSEIQLDGEHAPRTTTFEFRSLPQGAYEVKATLLASDGSALATVRQQVNVIATGAGQ*
Ga0066709_1041842071	3300009137	Grasslands Soil	IVAESPDFYRSSEIQLDGERAPRTTTFEFRSLPPGTYEVKATLLGPGGSPRASLRQQVNVIASGTGQ*
Ga0114129_126047001	3300009147	Populus Rhizosphere	RSSEIELDGENAPRTNLFEFRSLPSGTYEVRVTLRGGDGRSLANVRQQVNVIEAGGQK*
Ga0105243_130107781	3300009148	Miscanthus Rhizosphere	NRAVEIVAESADFYRSSQIELEGDKAPRTSTFEFRSLPPGTYEVRALLLGAGGEQRAFARQTINVIASGAGH*
Ga0111538_109099222	3300009156	Populus Rhizosphere	TMIEADHDNRAVEIVAESADFYRSSQIQLEGDKAPRTTNFEFRSLPPGTYEVRALLIGTGGEQRAFARQTINVIASGAGH*
Ga0105241_112238961	3300009174	Corn Rhizosphere	PVDADNRAIEIVAESDDFYRSSEIQLEGDRAARTTMFEFRSLPPGTYEVRANLFGSNGQSRALIRQQVNVLASGSSGQ*
Ga0105249_105232432	3300009553	Switchgrass Rhizosphere	VAESPDFYRSSEVQLEGDKAPRTSRIEFRNLPPGTYDVRVMLLDSGGQQRASARQQVNVIASAAGH*
Ga0105855_10438911	3300009649	Permafrost Soil	SEVQIEGERAPRTRMFEFRSLPPGTYEVRANLVGADGRSRAMIRQQVNVYAGGNGDR*
Ga0105859_10389223	3300009651	Permafrost Soil	VRIVAESADFYRSSEVQIEGERAPRTRMFEFRSLPPGTYEVRANLVGADGRSRAMIRQQVNVYAGGNGDR*
Ga0105854_13880632	3300009660	Permafrost Soil	IVADADNRAVEIVAESQDFYRSSQIQLEGEKAPRTNMFEFRSLPPGTYEVRANLRGANGQSRAMIRQQINVIPVGAGDR*
Ga0126321_12169462	3300010145	Soil	VEIVAESTEFYRSSEIELDGERAPRTTTFEFRSLPPGTYEVKATLLGPGGSARASLRQQVNVIASGAGQ*
Ga0126376_124958822	3300010359	Tropical Forest Soil	SRDFYRSSEISLNGDQAPRTSQFEFRSLPPGTYGVRAVLRGSTGDERATVRQQVNAISSGGSDRCAEDACQVTVS*
Ga0126377_134591482	3300010362	Tropical Forest Soil	FAPANLIVRAHIEADAQNRAVEIVAESTEFYRSSEMQLDGENAPRSSTFEFRSLPPGTYEVTATLLGPGGSPRASVRQSVNVIATGSGR*
Ga0126377_135064812	3300010362	Tropical Forest Soil	EIVAESTEFYRSSEIQLDGENAPRTNTFEFRSLPQGTYEVTATLLGPGGSPRASVRQSVNVIATGAGR*
Ga0134125_104543741	3300010371	Terrestrial Soil	NRAVEIVAESADFYRSSQIELEGDKAPRTSTFEFRSLPPGTYEVRAMLLGAGGAQRAFARQTINVIASGAGH*
Ga0134128_115730911	3300010373	Terrestrial Soil	DADNRAVEIVAESPDFYRSSEIQLEGDRAARTTTFEFRSLPPGTYEVRAKLLGVDGQQRAAVRQQVNVIASGQGDRF*
Ga0134127_126937111	3300010399	Terrestrial Soil	EIQLDGERAPRTNTFEFRSLPPGVYEVKAILMGSDGNARATMRQQVNVIATGAGH*
Ga0134122_110055282	3300010400	Terrestrial Soil	DFYRSSEIQLEGDKSARTTSFEFRSLPPGTYEVRAKLYGADGQARAAVRQQVNVIASGAGDRF*
Ga0137391_110318561	3300011270	Vadose Zone Soil	VRATIECDADNRAVQISAESPDFYRSSEIQLEGERAARTNMFEFRSLPPGTYEVRATLVGMGGQTRGTVRQQVNVIATGAGDR*
Ga0137389_115514381	3300012096	Vadose Zone Soil	NLVVRAMIEADPLNRAVTIIAESDDFYRSSEIQLEGDKAPRTTTFEFRHLPSGSYEVRARLVGADGQERGYVRRSINVISSAAGR*
Ga0137382_106321102	3300012200	Vadose Zone Soil	QADRANRAVEVVAESNDFYRSSEIELDGENAPRTNMFEFRSLPSGTYEVRVTVRGGGGEQLANVRQQVNVIEAGGAK*
Ga0137381_109356792	3300012207	Vadose Zone Soil	EIVAESTDFYRSSEIQLDGEHAPRTTTFEFRSLPQGAYEVKATLLASDGSALATVRRQVNVIATGAGH*
Ga0150985_1202806971	3300012212	Avena Fatua Rhizosphere	DFYRSSEIQLEGDKAARTTTFEFRSLPSGTYEVRATLYGTGGKRGVVRQQVNVMASGAGDR*
Ga0137367_102269913	3300012353	Vadose Zone Soil	TDFYRSSEIQLDGEHAPRTTTFEFRSLPQGVYEVKATLLASDGAALATVRQQVNVIATGAGH*
Ga0137368_107052361	3300012358	Vadose Zone Soil	RSSEIQLDGDRAPRTSTFEFRSLPSGTYEVRAMLIGEGGEQRAAMRQAVNVIAGGSGQ*
Ga0150984_1124936951	3300012469	Avena Fatua Rhizosphere	IEIVAESQDFYRSSEMQLEGDKAARTTMFEFRSLPPGTYEVRAKLLGADGQARAAVRQQVNVIAAGAGDRF*
Ga0150984_1137697341	3300012469	Avena Fatua Rhizosphere	GERAARTNMFEFRSLPPGTYEVRASLLGSHGETRAMIRQQVNVLQSGAGDSR*
Ga0157284_102792691	3300012893	Soil	RSSEVQLEGDKAPRTSMIEFRNLPPGTYDVRVLLLGSGGQQRAFARQPVNVIAIGPGH*
Ga0137416_100882821	3300012927	Vadose Zone Soil	LSVRATIEADAENRAVVIIAESADFYRSSEIQLDGGNGPRTNMLEFRSLPPGRYEVRAALFGADGQQRGLVRQQVSVIAGGAGH*
Ga0137410_117386901	3300012944	Vadose Zone Soil	VEIVAESPEFYRSSEIQLDGENAPRTNTFEFRSLPPGTYEVKATLLGPGGSARASVRQQVNVIASGAGQ*
Ga0164307_106345972	3300012987	Soil	FAPANLIVRATIVADADNRAVEIVAESPAFYRSSMIQLEGDKAARVSTFEFRSLPPGTYEVRANLYGLSGEPRASISSQVNVIASGAGER*
Ga0164305_107496112	3300012989	Soil	AESSDFYRSSEIQLEGDKAARTTTFEFRSLPPGTYEVRAKLFGPDGQARAAARQQVNVMASGAGDPF*
Ga0164305_108153691	3300012989	Soil	SPNFYRSSEIELEGDKAARTEVFEFRSLPPGTYEVRATLFGTNGRRGVVRQQVNVIPSGAADR*
Ga0157378_125869351	3300013297	Miscanthus Rhizosphere	RSSEIQLEGERAAKTNMFEFRSLPPGMYEVRANLVGTDGRSRAIIRQTVNVLASGAGDR*
Ga0132258_122383213	3300015371	Arabidopsis Rhizosphere	ARNRAIEIVAESPDFYRSSEIQLDGENAPRTTRFEFRSLPPGNYEVTARLLGSDGAALVTVRQMMNVIASGAH*
Ga0132256_1016275981	3300015372	Arabidopsis Rhizosphere	EGDRAPRTSMFEFRSLPPGTYEVRATLRGSHGEDRSTMRQQINVIASGAGH*
Ga0132255_1043428482	3300015374	Arabidopsis Rhizosphere	ADESNRAVEIVAESETFYRSSEIQLEGDRAPRTSMFEFRSLPPGTYEVRATLRGSHGEDRSTIRQQINVIASGAGH*
Ga0184609_101196763	3300018076	Groundwater Sediment	AFAPANLSVRTMIEADSANRGVEIVAESTEFYRSSQIQLDGEHAPRTTTFEFRSLPSGAYEVKATLLGSGGAALATVRQQVNVIAGGSGH
Ga0184628_106366501	3300018083	Groundwater Sediment	PANLVVRTMIEADQDNRAVEIVAESADFYRSSQIQLEGDKAPRTTNFEFRSLPPGTYEVRALLIGTGGEQRAFARQTINVIASGAGH
Ga0066662_123179531	3300018468	Grasslands Soil	DADNRAVEIVAESPEFYRSSMMQLEGDKAARVATFEFHSLPPGTYEVRANLFGTSGEPRASTGRQVSIIASGGSDR
Ga0193753_102918221	3300020034	Soil	RAVEIVAESADFYRSSQIQLEGEKAARTNMFEFRSLPPGTYEVRASLFGADGQSRALVRQQINVFASGAGDR
Ga0210381_101955522	3300021078	Groundwater Sediment	FYRSSEIQLDGDKAPRTTMFEFRSLPQGTYEVRANLIGAGGQQRAWVRQQINVIAGGSGR
Ga0222622_100857321	3300022756	Groundwater Sediment	SSEIQLEGDKAPRTSMFEFRSLPPGTYEVRALLLGSGGQQRAFARQQVNVIPSGAGH
Ga0247800_10584702	3300023263	Soil	SEIQLEGDRAPRTSMFEFRSLPPGTYEVRATLRGSHGEDRSTMRQQINVIASGAGH
Ga0247665_10118373	3300024219	Soil	GERAARTTMFEFRDLPSGAYEVRANLLGADGRSRAMSRQQVNVIANGSGERSSR
Ga0207656_102703111	3300025321	Corn Rhizosphere	FADADNRAVEIVAESDDFYRSSQVQLEGERAARTTMFEFRDLPSGTYEVRANLFGADGRSRAMIRQQVNVIANGRGEK
Ga0207699_105705531	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VVAESNDFYRASEIELDGENAPRTNTFEFRSLPSGTYEVRVTVRGGGGQPLANVRQEVNVIEAGGAK
Ga0207707_115707841	3300025912	Corn Rhizosphere	ATIQADSQNRAVEIVAESTEFYRSSEVELDGENAPRTSMFEFRSLPPGTYEVSATLRASDGRPLAHVRQQVNVIEAGGTR
Ga0207662_109220012	3300025918	Switchgrass Rhizosphere	ADFYRSSQIELEGDKAPRTSTFEFRSLPPGTYEVRAMLLGAGGAQRAFARQTINVIASGAGH
Ga0207657_113097831	3300025919	Corn Rhizosphere	SQTQLEGDKAPRTTNFEFRSLPPGTYEVRALLIGTGGEQRAFARQTINVIASGAGH
Ga0207659_101499381	3300025926	Miscanthus Rhizosphere	QLDGDKAARTSQFEFRSLPQGTYEVRANLLGTRGEQRATVRQQVNVMASGMGDR
Ga0207701_113969582	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DFYRSSQIQLEGDKAPRTTSFEFRSLPPGTYDVRALLIGADGEQRAFARQTINVIASGAG
Ga0207686_108602641	3300025934	Miscanthus Rhizosphere	AMIEADQDNRAVEIVAESADFYRSSQIELEGDKAPRTSTFEFRSLPPGTYEVRAMLLGAGGAQRAFARQTINVIASGAGH
Ga0207704_100032651	3300025938	Miscanthus Rhizosphere	RSSQIQLEGEKAARTSMFEFRSLPPGTYEVRANLLGADGRSRAMIRQQVNVIASGTGDRE
Ga0207691_112858221	3300025940	Miscanthus Rhizosphere	NLIVRAMIEADDQNRSVQIVAESADFYRSSEVQLEGDKAPRTSMLEFRNLPPGSYEVRALLFGADGRQRAYARQQVNVIVSGAGH
Ga0207689_109313321	3300025942	Miscanthus Rhizosphere	GDKAPRTSRIEFRNLPPGTYDVRVMLLDSGGQQRASARQQVNVIASAAGH
Ga0207661_114424891	3300025944	Corn Rhizosphere	FAPANLIVRAMIVADADNRAVEIIAESQDFYRSSMVQLDGENAARTSSFEFRSLPPGTYEVRANLLGVRGEQRASVRQQINVIASGAGDR
Ga0207712_111420721	3300025961	Switchgrass Rhizosphere	EIVAESADFYRSSQIQLEGDKAPRTTNFEFRSLPPGTYEVRALLIGTGGEQRAFARQMINVIASGAGH
Ga0207668_112663492	3300025972	Switchgrass Rhizosphere	EADQDNRAVEIVAESADFYRSSQIQLEGDKAPRTTNFEFRSLPPGTYEVRALLIGTGGEQRAFARQMINVIASGAGH
Ga0207639_103400641	3300026041	Corn Rhizosphere	PANLIVRAMVIADADNRAVEIVAESDDFYRSSMIQLEGDKAARTSQFEFHSLPPGIYEVRANLYGSNGAQRATIRQQINVISSGTRER
Ga0207641_105239372	3300026088	Switchgrass Rhizosphere	GDKAARTSQFEFRSLPQGTYEVRANLLGTRGEQRATVRQQVNVMASGMGDR
Ga0207648_103206532	3300026089	Miscanthus Rhizosphere	AESTDFYRSSEIQLDGENAPRTTMFEFRSLPPGTYEVRANLIGAGRQQRAWVRQQINVIAGGAGQ
Ga0209236_13119692	3300026298	Grasslands Soil	LSVRATIEADAENRAVVIIAESADFYRSSEIQLDGGNGPRTNMLEFRSLPPGRYEVRAALFGADGQQRGLVRQQVSVIAGGAGH
Ga0209577_108423271	3300026552	Soil	VRATIEADSANRAVEVVAESSEFYRSSEIELDGENAPRTNMFEFRSLPSGTYEVRVTLRGGDGHQLANVRQQVNVIESGGTR
Ga0207544_1006612	3300027423	Soil	VQLDGENSARTTSFEFRSLPPGTYEVRANLLGTRGEQRATVRQQINVMASGARDR
Ga0208890_10445822	3300027523	Soil	SSEIQLEGERAARTSMFEFRSLPPGTYEVRANLVGANGRSRAMIRQQVNVLASGAGDR
Ga0209971_10657512	3300027682	Arabidopsis Thaliana Rhizosphere	PANLIVRTMILADRENRAVAVIAESPEYYRSSEIQLNGENAARTTTFEFRSLPPGSYQVKALLLDSTGQERAAAFQQVNVIASGGAR
Ga0209811_101228481	3300027821	Surface Soil	RATIPADADNRAVEIVAESDDFYRSSEIQLEGERAARTSMFEFRSLPPGTYEVRANLVGANGRSRAMIRQQVNVLASGAGDR
Ga0307296_106911792	3300028819	Soil	AVQIIAESADFYRSSEIQLEGDKAPRTSMFEFRSLPPGTYEVRALLLGSGGQQRAFARQQVNVIPSGAGH
Ga0310888_106397371	3300031538	Soil	VEIVAESETFYRSSEIQLEGDRAPRTSMFEFRSLPPGTYEVRATLRGSHGEDRSTIRQQINVIASGAGH
Ga0310887_101184091	3300031547	Soil	IVADESNRAVEIVAESETFYRSSEIQLEGDRAPRTSMFEFRSLPPGTYEVRATLRGSHGEDRSTIRQQINVIASGAGH
Ga0307468_1017841162	3300031740	Hardwood Forest Soil	IAESNDFYRSSEIQLEGDKAPRTTTFEFRSLPSGTYEVRASLRGADGRERGIVRRSVNVVTADGGR
Ga0318526_100517922	3300031769	Soil	VEVVAESAEFYRSSEIQLEGERAPRTSVFEFRSLPPGRYEVRATLRGSRGRERASVRQQVNVIASAAGS
Ga0318568_104510252	3300031819	Soil	AEFYRSSEIQLEGERAPRTSVFEFRSLPPGRYEVRATLRGSRGRERASVRQQVNVIASAAGS
Ga0307473_113536711	3300031820	Hardwood Forest Soil	VAFAPAHLVVRAMIEADSENRAVTIIAESIDFYRSSEIQLEGDKAPRTTTFEFRSLPSGTYEVRASLRGADGRERGIVRRSVNVVTADGGR
Ga0310906_102122112	3300032013	Soil	SETFYRSSEIQLEGDRAPRTSMFEFRSLPPGTYEVRATLRGSHGEDRSTIRQQINVIASGAGH
Ga0318533_100819671	3300032059	Soil	VVAESAEFYRSSEIQLEGERAPRTSVFEFRSLPPGRYEVRATLRGSRGRERASVRQQVNVIASAAGS
Ga0318533_102566773	3300032059	Soil	SSEIELNGDSAPRTTRFEFRSLPSGVYEVSAVLNGAAGEPRARVRQQVNVMTSGSGH
Ga0310810_104772791	3300033412	Soil	SPDYYRSSEIQLNGEEAPRTTTFEFRSLPPGSYEVKAVLLDSTGGERATALTQVNVIASGGRDGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052215

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences