NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105458

Metagenome Family F105458

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105458
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 38 residues
Representative Sequence MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHF
Number of Associated Samples 99
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 86.00 %
% of genes near scaffold ends (potentially truncated) 85.00 %
% of genes from short scaffolds (< 2000 bps) 86.00 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (55.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(14.000 % of family members)
Environment Ontology (ENVO) Unclassified
(20.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(29.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1N55_08185160
2P5cmW16_10054175
3Ga0070699_1000044433
4Ga0068866_105792461
5Ga0074472_112940232
6Ga0074470_1079902725
7Ga0068858_1016215331
8Ga0075023_1005245511
9Ga0075422_104460721
10Ga0075520_13199911
11Ga0079216_102522191
12Ga0066793_101273031
13Ga0105048_109244281
14Ga0115027_109994061
15Ga0105249_116506151
16Ga0126310_113821521
17Ga0134125_113209991
18Ga0138514_1001060741
19Ga0120148_10285221
20Ga0120161_11300091
21Ga0157293_100140413
22Ga0157289_101283602
23Ga0137396_108966501
24Ga0157375_114048212
25Ga0120109_10078393
26Ga0075326_10322932
27Ga0075341_10678822
28Ga0075323_10735731
29Ga0075343_10686282
30Ga0182017_109521001
31Ga0182027_113923901
32Ga0180084_11069551
33Ga0173483_102672081
34Ga0132258_118503551
35Ga0132257_1011896912
36Ga0132255_1059726122
37Ga0182038_105351962
38Ga0183260_101138692
39Ga0184619_100490022
40Ga0184624_103664642
41Ga0190265_124298801
42Ga0190274_106068651
43Ga0190273_120588382
44Ga0182028_10062692
45Ga0193703_10728641
46Ga0163153_103149521
47Ga0163152_100865282
48Ga0210379_105619922
49Ga0193706_11158671
50Ga0222621_11338881
51Ga0193714_10632791
52Ga0209539_13158731
53Ga0210113_100080111
54Ga0207642_101336491
55Ga0207688_100708352
56Ga0207707_108540462
57Ga0207646_100057291
58Ga0207670_117357411
59Ga0207704_100795213
60Ga0210068_10278731
61Ga0207651_100331434
62Ga0207676_123777831
63Ga0209375_12535081
64Ga0247847_10087241
65Ga0207544_1002601
66Ga0209984_10307821
67Ga0209970_10161592
68Ga0209387_10556351
69Ga0209971_10293922
70Ga0209488_107442891
71Ga0207428_105467221
72Ga0209859_10536421
73Ga0268264_100979643
74Ga0302258_11184391
75Ga0307296_101130352
76Ga0307310_100601492
77Ga0307278_100040031
78Ga0311360_113332001
79Ga0268241_102053182
80Ga0311366_107768281
81Ga0170824_1028758551
82Ga0302323_1016232701
83Ga0265330_104184182
84Ga0315544_100115020
85Ga0318494_100235794
86Ga0318526_101533742
87Ga0318523_101480142
88Ga0318499_101829532
89Ga0311367_113767831
90Ga0318530_101687961
91Ga0318569_101188232
92Ga0318558_103699492
93Ga0315912_115762172
94Ga0316198_107449261
95Ga0315275_110575601
96Ga0315275_112967751
97Ga0335397_101533523
98Ga0315273_106037701
99Ga0310810_107783371
100Ga0247829_108093811
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
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Variant

5101520253035MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
45.0%55.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Wetland
Groundwater Sediment
Freshwater Microbial Mat
Sediment
Polar Desert Sand
Freshwater
Sediment
Salt Marsh Sediment
Natural And Restored Wetlands
Soil
Sediment (Intertidal)
Groundwater Sediment
Watersheds
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Serpentine Soil
Soil
Agricultural Soil
Arctic Peat Soil
Permafrost
Soil
Grass Soil
Soil
Forest Soil
Soil
Soil
Natural And Restored Wetlands
Fen
Prmafrost Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Groundwater Sand
Soil
Fen
Bog
Soil
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
3.0%14.0%4.0%7.0%4.0%3.0%4.0%3.0%3.0%3.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N55_081851602189573000Grass SoilMFVRTVDDKASDTLVVVSGEGFWTGSSTVPHLHQSPC
P5cmW16_100541753300001664PermafrostMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQFV
Ga0070699_10000444333300005518Corn, Switchgrass And Miscanthus RhizosphereMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQQIAGSCA*
Ga0068866_1057924613300005718Miscanthus RhizosphereMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHF
Ga0074472_1129402323300005833Sediment (Intertidal)MPVRAVDDKPSDTLVVVSDEGFWTGSSTLPHLHHVHLRAKTDTLGTT
Ga0074470_10799027253300005836Sediment (Intertidal)MPVRAIDDKPSDTLVVVSGEGFWTGSSTLPHLHHH
Ga0068858_10162153313300005842Switchgrass RhizosphereMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQHS
Ga0075023_10052455113300006041WatershedsMFVRTVDDKPSDTLVVVSGEGFWTGSSTLPHLHQY
Ga0075422_1044607213300006196Populus RhizosphereMPVRAIDDKPSDTLVVVSDEGFWTGSSTLPHLHHFRSRVS
Ga0075520_131999113300006795Arctic Peat SoilDKSSDTLVVVSGEGFWTGSSTLPHLHHFFARAAQ*
Ga0079216_1025221913300006918Agricultural SoilMVAWWIDNKPSDTLVVFSERTLWTRSSTLLHLHQI
Ga0066793_1012730313300009029Prmafrost SoilMAVRAIDDKSSDTLVVVSGEGFWTGSSTLPHLHHFFALRR
Ga0105048_1092442813300009032FreshwaterMLPMVARPFDDKPSDTLVVDFGRRFWTGSSTLPHLHQTLP*
Ga0115027_1099940613300009131WetlandMAVRRADDKASDTLVVVPGHGFRTGSSTLPHLHHL
Ga0105249_1165061513300009553Switchgrass RhizosphereMPVRAVDDKPSDTLVVVSEEGFWTGSSTLPHLHQPP
Ga0126310_1138215213300010044Serpentine SoilMPVRTIDDKPSDTLVVVPGEGFWTGSSTLPHLHHNACFTK
Ga0134125_1132099913300010371Terrestrial SoilMPVRTVDDKASDTLVVVSGEGFWTGSSTLPHLHHTAFSRC
Ga0138514_10010607413300011003SoilMPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQRSISA
Ga0120148_102852213300011999PermafrostMPVRAVDDKASDTLVVVSGEGFWTGSSTLPHLHQHPALW
Ga0120161_113000913300012005PermafrostMPVRAVDDKASDTLVVVSGEGFWTGSSTLPHLHQH
Ga0157293_1001404133300012898SoilMPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHHFFA
Ga0157289_1012836023300012903SoilMPVRAIDDKASDTLVVVSDEGSWTGSSTLPHLHHFDSSCLAPSGSRW
Ga0137396_1089665013300012918Vadose Zone SoilMFVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQH
Ga0157375_1140482123300013308Miscanthus RhizosphereMGSPAVDDKASDTLVVVPGEGLWTGSSTLPHLHQSSSEAPD
Ga0120109_100783933300014052PermafrostMPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQFVSVAVGA
Ga0075326_103229323300014271Natural And Restored WetlandsMGARPVDDKPSDTLVEVPGEGLWTGSSTLPHLHHTEHVS
Ga0075341_106788223300014298Natural And Restored WetlandsMFVRTVDDKPSDTLVVVSEEGFWTGSSTLPHLHQPPCRRG
Ga0075323_107357313300014301Natural And Restored WetlandsMFVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHS
Ga0075343_106862823300014317Natural And Restored WetlandsMFVRAVDDKPSDTLVVVSGEGSWTGSSTLPHLHQQLLRVHFV
Ga0182017_1095210013300014494FenMVDRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHHL
Ga0182027_1139239013300014839FenMVGRALDDKLSDTLVVVSGEGSWTGSSTLPHLHHFFAP
Ga0180084_110695513300014874SoilMPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQFPALNVSARGAGSLIEL
Ga0173483_1026720813300015077SoilMPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHHFF
Ga0132258_1185035513300015371Arabidopsis RhizosphereMPVRAIDDKPSDTLVVVSGEGFWTGSSTLPHLHQHSF
Ga0132257_10118969123300015373Arabidopsis RhizosphereMGAPAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQLL
Ga0132255_10597261223300015374Arabidopsis RhizosphereMLPMVARPFDDKASDTLVVGFGSRFWTGSSTLPHLHQIGHV
Ga0182038_1053519623300016445SoilMGALAVDDKASDTLVVVPGEGFWTGSSTLPHLHQH
Ga0183260_1011386923300017787Polar Desert SandMPVRAVDDKPSDTLVVVPGEGLWTGSSTLPHLHQH
Ga0184619_1004900223300018061Groundwater SedimentMPVRAVDDKASDTLVVVSDEGFWTGSSTLPHLHHN
Ga0184624_1036646423300018073Groundwater SedimentMPVRAIDDKPSDTLVVVSGEGFWTGSSTLPHLHQYSL
Ga0190265_1242988013300018422SoilMPVRTVDDKASDTLVVVSDEGSWTGSSTLPHLHHFHMNTV
Ga0190274_1060686513300018476SoilRVPMPVRAVDDKPSDTLVVVSEEGFWTGSSTLPHLHQTNRP
Ga0190273_1205883823300018920SoilMFVRAVDDKPSDTLVVVSGYGFWTGSSTLPHLHQLDSSVDLS
Ga0182028_100626923300019788FenMVGRAIDDKSSNTLVVVSGEGFWTGSSTLPHLHHFF
Ga0193703_107286413300019876SoilMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFIWWLYRATS
Ga0163153_1031495213300020186Freshwater Microbial MatMPVRAVDDKSSDTLVVVSDEGSWTGSSTLPHLHHFKPACV
Ga0163152_1008652823300020213Freshwater Microbial MatMFVRTVDDKTSDTLVVVSDEGSWTGSSTLPHLHHF
Ga0210379_1056199223300021081Groundwater SedimentMPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQHTSV
Ga0193706_111586713300021339SoilMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFFSAHR
Ga0222621_113388813300021510Groundwater SedimentMPVRAVDDKPSDTLVVVSGEGPWTGSSTLPHLHQSS
Ga0193714_106327913300023058SoilMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQHK
Ga0209539_131587313300025764Arctic Peat SoilMVGRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHHFFAPAARR
Ga0210113_1000801113300025796Natural And Restored WetlandsMPVRAVDDKPSDTLVVVFGKGFWTGSSTLPHLHHVVRTLAPQAMKR
Ga0207642_1013364913300025899Miscanthus RhizosphereMPVRAIDDKASDTLVVVSDEGFWTGSSTLPHLHHL
Ga0207688_1007083523300025901Corn, Switchgrass And Miscanthus RhizosphereMPVRAIDDKASDTLVVVSDEGFWTGSSTLPHLHHLFLARH
Ga0207707_1085404623300025912Corn RhizosphereMGAPPVDDKPSDTLVVVSGEGFWTGSSTLPHLHHMTRVDANA
Ga0207646_1000572913300025922Corn, Switchgrass And Miscanthus RhizosphereMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQQIAGSCA
Ga0207670_1173574113300025936Switchgrass RhizosphereMGSPAVDDKASDTLVVVPGEGLWTGSSTLPHLHQSSTE
Ga0207704_1007952133300025938Miscanthus RhizosphereMPVRAIDDKASDTLVVVSDEGFWTGSSTLPHLHHLYFARHGSR
Ga0210068_102787313300025953Natural And Restored WetlandsMFVRTVDDKPSDTLVVVSGEGFWTGSSTLPHLHQH
Ga0207651_1003314343300025960Switchgrass RhizosphereMPVRAIDDKASDTLVVVSDEGFWTGSSTLPHLHHFFLFTA
Ga0207676_1237778313300026095Switchgrass RhizosphereMGSPAVDDKASDTLVVVPGEGLWTGSSTLPHLHQSSSEA
Ga0209375_125350813300026329SoilMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHTFE
Ga0247847_100872413300026450SoilMVDRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHHF
Ga0207544_10026013300027423SoilMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFFARHD
Ga0209984_103078213300027424Arabidopsis Thaliana RhizosphereMPVRAVDDKASDTLVVVSGEGFWTGSSTLPHLHQY
Ga0209970_101615923300027614Arabidopsis Thaliana RhizosphereMPVRAVDDKASDTLVVVSGEGFWTGSSTLPHLHHFS
Ga0209387_105563513300027639Agricultural SoilMPVRAVDDKASDTLVVVFGEGFWTGSSTLPHLHQSCS
Ga0209971_102939223300027682Arabidopsis Thaliana RhizosphereMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQHLPIQRAV
Ga0209488_1074428913300027903Vadose Zone SoilMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHTRSGKK
Ga0207428_1054672213300027907Populus RhizosphereMGSPAVDDKASDTLVVVPGEGLWTGSSTLPHLHQSSSEAPDT
Ga0209859_105364213300027954Groundwater SandMPDRAVDDKASDTLVVVSGEGSWTGSSTLPHLHHFPFECRGGRR
Ga0268264_1009796433300028381Switchgrass RhizosphereMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQLDRNAEA
Ga0302258_111843913300028770FenMPVRAVDDKPSDTLVVVSDEGSWTGSSTLPHLHQHP
Ga0307296_1011303523300028819SoilMPVRAVDDKSSDTLVVVPGEGSWTGSSTLPHLHQLTFIRY
Ga0307310_1006014923300028824SoilMPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQHTVLDASVY
Ga0307278_1000400313300028878SoilMSVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQFTLL
Ga0311360_1133320013300030339BogMVGRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHHFF
Ga0268241_1020531823300030511SoilMGVPAVDDKASDTLVVGSGEGFWTGSSTLPHLHHARFVARTG
Ga0311366_1077682813300030943FenMVDRAIDDKSSNTLVVVSGEGFWTGSSTLPHLHHFF
Ga0170824_10287585513300031231Forest SoilMPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQLD
Ga0302323_10162327013300031232FenMLPMVARPFDDKPSDTLVVGFGRRFWTGSSTLPHLHQTLR
Ga0265330_1041841823300031235RhizosphereMGAWSVDDKSSDTLVVVPGEGFWTGSSTLPHLHQRCPGAP
Ga0315544_1001150203300031554Salt Marsh SedimentMAVRAIDDKASDTLVVVSGEGSWTGSSTLPHLHHF
Ga0318494_1002357943300031751SoilMGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHPPYSGFL
Ga0318526_1015337423300031769SoilMGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHPPFSWFL
Ga0318523_1014801423300031798SoilMGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHRPFSWF
Ga0318499_1018295323300031832SoilMGARPLDDKPSDTLVVVSGDGFWTGSSTLPHLHQMIQR
Ga0311367_1137678313300031918FenVGMLPMVARPFDDKPSDTLVVGFGRRFWTGSSTLPHLHQTLR
Ga0318530_1016879613300031959SoilMGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHMSPGPE
Ga0318569_1011882323300032010SoilMGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHPPFSWL
Ga0318558_1036994923300032044SoilMGARPLDDKPSDTLVVVPGNGSWTGSSTLPHLHHFR
Ga0315912_1157621723300032157SoilMLVRAVDDKPSDTLVVVSGEGSWTGSSTLPHLHQPT
Ga0316198_1074492613300032251SedimentMLGRRIDDKPSDTLVVVFGRRFWTGSSTLPHLHQSEIQHDPV
Ga0315275_1105756013300032401SedimentMVVRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHQFFVPRRGG
Ga0315275_1129677513300032401SedimentMDARAVDDKSSDTLVVVPGDGFWTGSSTLPHLHQMKDRDASLLVR
Ga0335397_1015335233300032420FreshwaterMLPMVARPFDDKPSDTLVVDFGRRFWTGSSTLPHLHQTLP
Ga0315273_1060377013300032516SedimentMPVRAVDDKPSDTLVVVSDEGFWTGSSTLPHLHQPPW
Ga0310810_1077833713300033412SoilMPVRAIDDKPSDTLVVVSGEGFWTGSSTLPHLHQTPDSVRAV
Ga0247829_1080938113300033550SoilMGARPVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFVSSHRR


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