Basic Information | |
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Family ID | F105458 |
Family Type | Metagenome |
Number of Sequences | 100 |
Average Sequence Length | 38 residues |
Representative Sequence | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHF |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 86.00 % |
% of genes near scaffold ends (potentially truncated) | 85.00 % |
% of genes from short scaffolds (< 2000 bps) | 86.00 % |
Associated GOLD sequencing projects | 96 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.15 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (55.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (20.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (29.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.15 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Wetland Groundwater Sediment Freshwater Microbial Mat Sediment Polar Desert Sand Freshwater Sediment Salt Marsh Sediment Natural And Restored Wetlands Soil Sediment (Intertidal) Groundwater Sediment Watersheds Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Serpentine Soil Soil Agricultural Soil Arctic Peat Soil Permafrost Soil Grass Soil Soil Forest Soil Soil Soil Natural And Restored Wetlands Fen Prmafrost Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Groundwater Sand Soil Fen Bog Soil Arabidopsis Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Rhizosphere Switchgrass Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
N55_08185160 | 2189573000 | Grass Soil | MFVRTVDDKASDTLVVVSGEGFWTGSSTVPHLHQSPC |
P5cmW16_10054175 | 3300001664 | Permafrost | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQFV |
Ga0070699_1000044433 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQQIAGSCA* |
Ga0068866_105792461 | 3300005718 | Miscanthus Rhizosphere | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHF |
Ga0074472_112940232 | 3300005833 | Sediment (Intertidal) | MPVRAVDDKPSDTLVVVSDEGFWTGSSTLPHLHHVHLRAKTDTLGTT |
Ga0074470_1079902725 | 3300005836 | Sediment (Intertidal) | MPVRAIDDKPSDTLVVVSGEGFWTGSSTLPHLHHH |
Ga0068858_1016215331 | 3300005842 | Switchgrass Rhizosphere | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQHS |
Ga0075023_1005245511 | 3300006041 | Watersheds | MFVRTVDDKPSDTLVVVSGEGFWTGSSTLPHLHQY |
Ga0075422_104460721 | 3300006196 | Populus Rhizosphere | MPVRAIDDKPSDTLVVVSDEGFWTGSSTLPHLHHFRSRVS |
Ga0075520_13199911 | 3300006795 | Arctic Peat Soil | DKSSDTLVVVSGEGFWTGSSTLPHLHHFFARAAQ* |
Ga0079216_102522191 | 3300006918 | Agricultural Soil | MVAWWIDNKPSDTLVVFSERTLWTRSSTLLHLHQI |
Ga0066793_101273031 | 3300009029 | Prmafrost Soil | MAVRAIDDKSSDTLVVVSGEGFWTGSSTLPHLHHFFALRR |
Ga0105048_109244281 | 3300009032 | Freshwater | MLPMVARPFDDKPSDTLVVDFGRRFWTGSSTLPHLHQTLP* |
Ga0115027_109994061 | 3300009131 | Wetland | MAVRRADDKASDTLVVVPGHGFRTGSSTLPHLHHL |
Ga0105249_116506151 | 3300009553 | Switchgrass Rhizosphere | MPVRAVDDKPSDTLVVVSEEGFWTGSSTLPHLHQPP |
Ga0126310_113821521 | 3300010044 | Serpentine Soil | MPVRTIDDKPSDTLVVVPGEGFWTGSSTLPHLHHNACFTK |
Ga0134125_113209991 | 3300010371 | Terrestrial Soil | MPVRTVDDKASDTLVVVSGEGFWTGSSTLPHLHHTAFSRC |
Ga0138514_1001060741 | 3300011003 | Soil | MPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQRSISA |
Ga0120148_10285221 | 3300011999 | Permafrost | MPVRAVDDKASDTLVVVSGEGFWTGSSTLPHLHQHPALW |
Ga0120161_11300091 | 3300012005 | Permafrost | MPVRAVDDKASDTLVVVSGEGFWTGSSTLPHLHQH |
Ga0157293_100140413 | 3300012898 | Soil | MPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHHFFA |
Ga0157289_101283602 | 3300012903 | Soil | MPVRAIDDKASDTLVVVSDEGSWTGSSTLPHLHHFDSSCLAPSGSRW |
Ga0137396_108966501 | 3300012918 | Vadose Zone Soil | MFVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQH |
Ga0157375_114048212 | 3300013308 | Miscanthus Rhizosphere | MGSPAVDDKASDTLVVVPGEGLWTGSSTLPHLHQSSSEAPD |
Ga0120109_10078393 | 3300014052 | Permafrost | MPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQFVSVAVGA |
Ga0075326_10322932 | 3300014271 | Natural And Restored Wetlands | MGARPVDDKPSDTLVEVPGEGLWTGSSTLPHLHHTEHVS |
Ga0075341_10678822 | 3300014298 | Natural And Restored Wetlands | MFVRTVDDKPSDTLVVVSEEGFWTGSSTLPHLHQPPCRRG |
Ga0075323_10735731 | 3300014301 | Natural And Restored Wetlands | MFVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHS |
Ga0075343_10686282 | 3300014317 | Natural And Restored Wetlands | MFVRAVDDKPSDTLVVVSGEGSWTGSSTLPHLHQQLLRVHFV |
Ga0182017_109521001 | 3300014494 | Fen | MVDRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHHL |
Ga0182027_113923901 | 3300014839 | Fen | MVGRALDDKLSDTLVVVSGEGSWTGSSTLPHLHHFFAP |
Ga0180084_11069551 | 3300014874 | Soil | MPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQFPALNVSARGAGSLIEL |
Ga0173483_102672081 | 3300015077 | Soil | MPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHHFF |
Ga0132258_118503551 | 3300015371 | Arabidopsis Rhizosphere | MPVRAIDDKPSDTLVVVSGEGFWTGSSTLPHLHQHSF |
Ga0132257_1011896912 | 3300015373 | Arabidopsis Rhizosphere | MGAPAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQLL |
Ga0132255_1059726122 | 3300015374 | Arabidopsis Rhizosphere | MLPMVARPFDDKASDTLVVGFGSRFWTGSSTLPHLHQIGHV |
Ga0182038_105351962 | 3300016445 | Soil | MGALAVDDKASDTLVVVPGEGFWTGSSTLPHLHQH |
Ga0183260_101138692 | 3300017787 | Polar Desert Sand | MPVRAVDDKPSDTLVVVPGEGLWTGSSTLPHLHQH |
Ga0184619_100490022 | 3300018061 | Groundwater Sediment | MPVRAVDDKASDTLVVVSDEGFWTGSSTLPHLHHN |
Ga0184624_103664642 | 3300018073 | Groundwater Sediment | MPVRAIDDKPSDTLVVVSGEGFWTGSSTLPHLHQYSL |
Ga0190265_124298801 | 3300018422 | Soil | MPVRTVDDKASDTLVVVSDEGSWTGSSTLPHLHHFHMNTV |
Ga0190274_106068651 | 3300018476 | Soil | RVPMPVRAVDDKPSDTLVVVSEEGFWTGSSTLPHLHQTNRP |
Ga0190273_120588382 | 3300018920 | Soil | MFVRAVDDKPSDTLVVVSGYGFWTGSSTLPHLHQLDSSVDLS |
Ga0182028_10062692 | 3300019788 | Fen | MVGRAIDDKSSNTLVVVSGEGFWTGSSTLPHLHHFF |
Ga0193703_10728641 | 3300019876 | Soil | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFIWWLYRATS |
Ga0163153_103149521 | 3300020186 | Freshwater Microbial Mat | MPVRAVDDKSSDTLVVVSDEGSWTGSSTLPHLHHFKPACV |
Ga0163152_100865282 | 3300020213 | Freshwater Microbial Mat | MFVRTVDDKTSDTLVVVSDEGSWTGSSTLPHLHHF |
Ga0210379_105619922 | 3300021081 | Groundwater Sediment | MPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQHTSV |
Ga0193706_11158671 | 3300021339 | Soil | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFFSAHR |
Ga0222621_11338881 | 3300021510 | Groundwater Sediment | MPVRAVDDKPSDTLVVVSGEGPWTGSSTLPHLHQSS |
Ga0193714_10632791 | 3300023058 | Soil | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQHK |
Ga0209539_13158731 | 3300025764 | Arctic Peat Soil | MVGRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHHFFAPAARR |
Ga0210113_100080111 | 3300025796 | Natural And Restored Wetlands | MPVRAVDDKPSDTLVVVFGKGFWTGSSTLPHLHHVVRTLAPQAMKR |
Ga0207642_101336491 | 3300025899 | Miscanthus Rhizosphere | MPVRAIDDKASDTLVVVSDEGFWTGSSTLPHLHHL |
Ga0207688_100708352 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MPVRAIDDKASDTLVVVSDEGFWTGSSTLPHLHHLFLARH |
Ga0207707_108540462 | 3300025912 | Corn Rhizosphere | MGAPPVDDKPSDTLVVVSGEGFWTGSSTLPHLHHMTRVDANA |
Ga0207646_100057291 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQQIAGSCA |
Ga0207670_117357411 | 3300025936 | Switchgrass Rhizosphere | MGSPAVDDKASDTLVVVPGEGLWTGSSTLPHLHQSSTE |
Ga0207704_100795213 | 3300025938 | Miscanthus Rhizosphere | MPVRAIDDKASDTLVVVSDEGFWTGSSTLPHLHHLYFARHGSR |
Ga0210068_10278731 | 3300025953 | Natural And Restored Wetlands | MFVRTVDDKPSDTLVVVSGEGFWTGSSTLPHLHQH |
Ga0207651_100331434 | 3300025960 | Switchgrass Rhizosphere | MPVRAIDDKASDTLVVVSDEGFWTGSSTLPHLHHFFLFTA |
Ga0207676_123777831 | 3300026095 | Switchgrass Rhizosphere | MGSPAVDDKASDTLVVVPGEGLWTGSSTLPHLHQSSSEA |
Ga0209375_12535081 | 3300026329 | Soil | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHTFE |
Ga0247847_10087241 | 3300026450 | Soil | MVDRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHHF |
Ga0207544_1002601 | 3300027423 | Soil | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFFARHD |
Ga0209984_10307821 | 3300027424 | Arabidopsis Thaliana Rhizosphere | MPVRAVDDKASDTLVVVSGEGFWTGSSTLPHLHQY |
Ga0209970_10161592 | 3300027614 | Arabidopsis Thaliana Rhizosphere | MPVRAVDDKASDTLVVVSGEGFWTGSSTLPHLHHFS |
Ga0209387_10556351 | 3300027639 | Agricultural Soil | MPVRAVDDKASDTLVVVFGEGFWTGSSTLPHLHQSCS |
Ga0209971_10293922 | 3300027682 | Arabidopsis Thaliana Rhizosphere | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQHLPIQRAV |
Ga0209488_107442891 | 3300027903 | Vadose Zone Soil | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHHTRSGKK |
Ga0207428_105467221 | 3300027907 | Populus Rhizosphere | MGSPAVDDKASDTLVVVPGEGLWTGSSTLPHLHQSSSEAPDT |
Ga0209859_10536421 | 3300027954 | Groundwater Sand | MPDRAVDDKASDTLVVVSGEGSWTGSSTLPHLHHFPFECRGGRR |
Ga0268264_100979643 | 3300028381 | Switchgrass Rhizosphere | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQLDRNAEA |
Ga0302258_11184391 | 3300028770 | Fen | MPVRAVDDKPSDTLVVVSDEGSWTGSSTLPHLHQHP |
Ga0307296_101130352 | 3300028819 | Soil | MPVRAVDDKSSDTLVVVPGEGSWTGSSTLPHLHQLTFIRY |
Ga0307310_100601492 | 3300028824 | Soil | MPVRAVDDKSSDTLVVVSGEGFWTGSSTLPHLHQHTVLDASVY |
Ga0307278_100040031 | 3300028878 | Soil | MSVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQFTLL |
Ga0311360_113332001 | 3300030339 | Bog | MVGRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHHFF |
Ga0268241_102053182 | 3300030511 | Soil | MGVPAVDDKASDTLVVGSGEGFWTGSSTLPHLHHARFVARTG |
Ga0311366_107768281 | 3300030943 | Fen | MVDRAIDDKSSNTLVVVSGEGFWTGSSTLPHLHHFF |
Ga0170824_1028758551 | 3300031231 | Forest Soil | MPVRAVDDKPSDTLVVVSGEGFWTGSSTLPHLHQLD |
Ga0302323_1016232701 | 3300031232 | Fen | MLPMVARPFDDKPSDTLVVGFGRRFWTGSSTLPHLHQTLR |
Ga0265330_104184182 | 3300031235 | Rhizosphere | MGAWSVDDKSSDTLVVVPGEGFWTGSSTLPHLHQRCPGAP |
Ga0315544_100115020 | 3300031554 | Salt Marsh Sediment | MAVRAIDDKASDTLVVVSGEGSWTGSSTLPHLHHF |
Ga0318494_100235794 | 3300031751 | Soil | MGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHPPYSGFL |
Ga0318526_101533742 | 3300031769 | Soil | MGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHPPFSWFL |
Ga0318523_101480142 | 3300031798 | Soil | MGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHRPFSWF |
Ga0318499_101829532 | 3300031832 | Soil | MGARPLDDKPSDTLVVVSGDGFWTGSSTLPHLHQMIQR |
Ga0311367_113767831 | 3300031918 | Fen | VGMLPMVARPFDDKPSDTLVVGFGRRFWTGSSTLPHLHQTLR |
Ga0318530_101687961 | 3300031959 | Soil | MGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHMSPGPE |
Ga0318569_101188232 | 3300032010 | Soil | MGARPVDDKPSDTLVVVSGDGFWTGSSTLPHLHHPPFSWL |
Ga0318558_103699492 | 3300032044 | Soil | MGARPLDDKPSDTLVVVPGNGSWTGSSTLPHLHHFR |
Ga0315912_115762172 | 3300032157 | Soil | MLVRAVDDKPSDTLVVVSGEGSWTGSSTLPHLHQPT |
Ga0316198_107449261 | 3300032251 | Sediment | MLGRRIDDKPSDTLVVVFGRRFWTGSSTLPHLHQSEIQHDPV |
Ga0315275_110575601 | 3300032401 | Sediment | MVVRAIDDKSPDTLVVVSGEGFWTGSSTLPHLHQFFVPRRGG |
Ga0315275_112967751 | 3300032401 | Sediment | MDARAVDDKSSDTLVVVPGDGFWTGSSTLPHLHQMKDRDASLLVR |
Ga0335397_101533523 | 3300032420 | Freshwater | MLPMVARPFDDKPSDTLVVDFGRRFWTGSSTLPHLHQTLP |
Ga0315273_106037701 | 3300032516 | Sediment | MPVRAVDDKPSDTLVVVSDEGFWTGSSTLPHLHQPPW |
Ga0310810_107783371 | 3300033412 | Soil | MPVRAIDDKPSDTLVVVSGEGFWTGSSTLPHLHQTPDSVRAV |
Ga0247829_108093811 | 3300033550 | Soil | MGARPVDDKPSDTLVVVSGEGFWTGSSTLPHLHHFVSSHRR |
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