Sample 3300027397

Overview

Basic Information
IMG/M Taxon OID	3300027397 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0055665 \| Ga0207463
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-11 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	24334690
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1
All Organisms → cellular organisms → Archaea	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.2958	Long. (^o)	-89.3799	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000569	Metagenome / Metatranscriptome	1018	Y
F002896	Metagenome / Metatranscriptome	522	N
F034564	Metagenome / Metatranscriptome	174	Y
F034995	Metagenome	173	N
F042319	Metagenome / Metatranscriptome	158	Y
F052029	Metagenome	143	Y
F055839	Metagenome / Metatranscriptome	138	Y
F059558	Metagenome / Metatranscriptome	133	Y
F067154	Metagenome / Metatranscriptome	126	Y
F071766	Metagenome	122	Y
F089138	Metagenome	109	N
F090480	Metagenome / Metatranscriptome	108	Y
F097297	Metagenome / Metatranscriptome	104	Y

Family

Category

Number of Sequences

3D Structure?

F000569

Metagenome / Metatranscriptome

1018

F002896

Metagenome / Metatranscriptome

522

F034564

Metagenome / Metatranscriptome

174

F034995

Metagenome

173

F042319

Metagenome / Metatranscriptome

158

F052029

Metagenome

143

F055839

Metagenome / Metatranscriptome

138

F059558

Metagenome / Metatranscriptome

133

F067154

Metagenome / Metatranscriptome

126

F071766

Metagenome

122

F089138

Metagenome

109

F090480

Metagenome / Metatranscriptome

108

F097297

Metagenome / Metatranscriptome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207463_100024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1951	Open in IMG/M
Ga0207463_100359	All Organisms → cellular organisms → Archaea	1116	Open in IMG/M
Ga0207463_100556	Not Available	994	Open in IMG/M
Ga0207463_100631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	963	Open in IMG/M
Ga0207463_100716	All Organisms → cellular organisms → Bacteria → Acidobacteria	926	Open in IMG/M
Ga0207463_100903	Not Available	861	Open in IMG/M
Ga0207463_100944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	850	Open in IMG/M
Ga0207463_101056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	818	Open in IMG/M
Ga0207463_101256	Not Available	769	Open in IMG/M
Ga0207463_101537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	721	Open in IMG/M
Ga0207463_101661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	702	Open in IMG/M
Ga0207463_101872	Not Available	672	Open in IMG/M
Ga0207463_102361	Not Available	624	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207463_100024

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860

1951

Open in IMG/M

Ga0207463_100359

All Organisms → cellular organisms → Archaea

1116

Open in IMG/M

Ga0207463_100556

Not Available

994

Open in IMG/M

Ga0207463_100631

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

963

Open in IMG/M

Ga0207463_100716

All Organisms → cellular organisms → Bacteria → Acidobacteria

926

Open in IMG/M

Ga0207463_100903

Not Available

861

Open in IMG/M

Ga0207463_100944

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae

850

Open in IMG/M

Ga0207463_101056

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

818

Open in IMG/M

Ga0207463_101256

Not Available

769

Open in IMG/M

Ga0207463_101537

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

721

Open in IMG/M

Ga0207463_101661

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici

702

Open in IMG/M

Ga0207463_101872

Not Available

672

Open in IMG/M

Ga0207463_102361

Not Available

624

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207463_100024	Ga0207463_1000244	F055839	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGT
Ga0207463_100359	Ga0207463_1003591	F002896	MDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILWVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDKNPRLCKEGTIFHQDLYNECVKTFKDLLIHSDAQHN
Ga0207463_100556	Ga0207463_1005561	F034995	IAGIFLIGFPAWMMKEMSVPLPEYRKGGYADYVLLAYELLAVYGSVLLGIAVHVGRAKWSGQSLFPFGLFKAGMWGVLVAASAYFVAGGVYGLISYGAFDKVIGGTLWGLLAIFWGVFGALVSAGLALLFYAWRGSAGYRPPGSAGLGTPRS
Ga0207463_100631	Ga0207463_1006313	F052029	ALNFRSILPVDSVAEQEINNTGALSEQFVTIGAASLALLVVAAIAVLIGMA
Ga0207463_100716	Ga0207463_1007161	F059558	EAFYHPTDGLLLISSLKGEVKNKHNRNGWIFSCFAAHLFEQDLF
Ga0207463_100903	Ga0207463_1009031	F097297	MLVTERMRSLGDHAKSSRQPPLKERKLTKSDASAATQDVINEKEFKKGAAHESAAVVIVDNPAPQTVVHENRNAAVAEITPDEEAAVLATVAAVLAKIDPQPPTADDNVTRPEPVREDAELSAAKRAIIHEWESWSALHSDELEDPNTSEYFFRHLQLKKADLLIFGLQNDLDAVRALIASQLR
Ga0207463_100944	Ga0207463_1009442	F042319	YQTTTIGIADQSALLSRIAAWCTHFVEGVREGQEIAARYHALAQLSSPELARRGLNRQTIARAALTSY
Ga0207463_101056	Ga0207463_1010561	F000569	MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYMSRRMKGSVLERIESALFPVFAFVALFAVRIVYGLFFEGQPYTLPHFLGGFAVTLVFIVVGGLLLVLGAWPFCRPHLREQLP
Ga0207463_101256	Ga0207463_1012561	F090480	VDCKMNKIFACIVFTATSGFSFAVATAMPLVPMGTEQARLTIPVADGCGFNRYRDARGICRKKYVITRHQGRQPVYTGCGGLNSHRVCNLYGHCWMVCD
Ga0207463_101537	Ga0207463_1015371	F089138	MLKEGMAKAEIVTVLRRYAYDINRISALMPDGGTAKDAQSRLKQLKDAIHSDYKHRNAITRSAQLTPLEQSNLASAILDVFSALQSIGVNTTPGREWRNALFGADMYIQRYLNELRDSEKSVESDTTEWL
Ga0207463_101661	Ga0207463_1016611	F034564	LLSHSLTVRRGIIWCDFPRHNGRTQTGGMNRSGRLSGYWYGAVCIAGLGFGLLGERRPFGQGILAHPFIVYAFVVAAGLLVIRVVRQQPVPELIPERALGLGCAAGVALFLAGNFIAAHLIGR
Ga0207463_101872	Ga0207463_1018721	F067154	SQAGSDRPPRDASVVARSILLVVAAGSVIATSNYFAYMIGRKQVTYEELRRQVDLVAQFIDQKRVEEEPAPVALKQRQERLEQNASGLTGLTTSTINGKTTAIAPERAPAIPAALFDDTAVARPDHEVRSQPPNAITKHRDMKRRQKVSPASAAAKRAPAEPAIAAQPGQSTTATATPDVGLAGQ
Ga0207463_102361	Ga0207463_1023611	F071766	MDEDFITLEVEEEGRGRLQFELPLDITDEEIAYIKSLVPRAESGLLELLDPDTGEVVFSC

Scaffold ID

Protein ID

Family

Sequence

Ga0207463_100024

Ga0207463_1000244

F055839

MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGT

Ga0207463_100359

Ga0207463_1003591

F002896

MDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILWVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDKNPRLCKEGTIFHQDLYNECVKTFKDLLIHSDAQHN

Ga0207463_100556

Ga0207463_1005561

F034995

IAGIFLIGFPAWMMKEMSVPLPEYRKGGYADYVLLAYELLAVYGSVLLGIAVHVGRAKWSGQSLFPFGLFKAGMWGVLVAASAYFVAGGVYGLISYGAFDKVIGGTLWGLLAIFWGVFGALVSAGLALLFYAWRGSAGYRPPGSAGLGTPRS

Ga0207463_100631

Ga0207463_1006313

F052029

ALNFRSILPVDSVAEQEINNTGALSEQFVTIGAASLALLVVAAIAVLIGMA

Ga0207463_100716

Ga0207463_1007161

F059558

EAFYHPTDGLLLISSLKGEVKNKHNRNGWIFSCFAAHLFEQDLF

Ga0207463_100903

Ga0207463_1009031

F097297

MLVTERMRSLGDHAKSSRQPPLKERKLTKSDASAATQDVINEKEFKKGAAHESAAVVIVDNPAPQTVVHENRNAAVAEITPDEEAAVLATVAAVLAKIDPQPPTADDNVTRPEPVREDAELSAAKRAIIHEWESWSALHSDELEDPNTSEYFFRHLQLKKADLLIFGLQNDLDAVRALIASQLR

Ga0207463_100944

Ga0207463_1009442

F042319

YQTTTIGIADQSALLSRIAAWCTHFVEGVREGQEIAARYHALAQLSSPELARRGLNRQTIARAALTSY

Ga0207463_101056

Ga0207463_1010561

F000569

MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYMSRRMKGSVLERIESALFPVFAFVALFAVRIVYGLFFEGQPYTLPHFLGGFAVTLVFIVVGGLLLVLGAWPFCRPHLREQLP

Ga0207463_101256

Ga0207463_1012561

F090480

VDCKMNKIFACIVFTATSGFSFAVATAMPLVPMGTEQARLTIPVADGCGFNRYRDARGICRKKYVITRHQGRQPVYTGCGGLNSHRVCNLYGHCWMVCD

Ga0207463_101537

Ga0207463_1015371

F089138

MLKEGMAKAEIVTVLRRYAYDINRISALMPDGGTAKDAQSRLKQLKDAIHSDYKHRNAITRSAQLTPLEQSNLASAILDVFSALQSIGVNTTPGREWRNALFGADMYIQRYLNELRDSEKSVESDTTEWL

Ga0207463_101661

Ga0207463_1016611

F034564

LLSHSLTVRRGIIWCDFPRHNGRTQTGGMNRSGRLSGYWYGAVCIAGLGFGLLGERRPFGQGILAHPFIVYAFVVAAGLLVIRVVRQQPVPELIPERALGLGCAAGVALFLAGNFIAAHLIGR

Ga0207463_101872

Ga0207463_1018721

F067154

SQAGSDRPPRDASVVARSILLVVAAGSVIATSNYFAYMIGRKQVTYEELRRQVDLVAQFIDQKRVEEEPAPVALKQRQERLEQNASGLTGLTTSTINGKTTAIAPERAPAIPAALFDDTAVARPDHEVRSQPPNAITKHRDMKRRQKVSPASAAAKRAPAEPAIAAQPGQSTTATATPDVGLAGQ

Ga0207463_102361

Ga0207463_1023611

F071766

MDEDFITLEVEEEGRGRLQFELPLDITDEEIAYIKSLVPRAESGLLELLDPDTGEVVFSC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027397: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-11 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences