Metagenome / Metatranscriptome Family F055839

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055839
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	94 residues
Representative Sequence	MKHLVPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLRTEFAPPGCYITRLVTTPSGTQLQELFIC
Number of Associated Samples	116
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	55.07 %
% of genes near scaffold ends (potentially truncated)	36.96 %
% of genes from short scaffolds (< 2000 bps)	78.99 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.043 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.594 % of family members)
Environment Ontology (ENVO)	Unclassified (34.783 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.899 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 19.17% β-sheet: 30.00% Coil/Unstructured: 50.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF03734	YkuD	7.25
PF01381	HTH_3	5.80
PF04392	ABC_sub_bind	5.07
PF12844	HTH_19	1.45
PF07045	DUF1330	1.45
PF12840	HTH_20	1.45
PF00839	Cys_rich_FGFR	0.72
PF00106	adh_short	0.72
PF00561	Abhydrolase_1	0.72
PF00534	Glycos_transf_1	0.72
PF05065	Phage_capsid	0.72
PF03466	LysR_substrate	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	7.25
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	7.25
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.07
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.45
COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	Mobilome: prophages, transposons [X]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
All Organisms	root	All Organisms	36.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
cellular organisms	root	All Organisms → cellular organisms	36.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26.09 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	8.70 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	4.35 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.45 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.45 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	8.70 %
unclassified Methylocystaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae	4.35 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.45 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.45 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	8.70 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	4.35 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.45 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.72 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.04 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	8.70 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	4.35 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.45 %
Bradyrhizobium sp. CCGB12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	0.72 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111006\|2214789656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	2265	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c000753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3969	Open in IMG/M
3300001991\|JGI24743J22301_10033379	Not Available	1019	Open in IMG/M
3300003349\|JGI26129J50193_1013306	Not Available	604	Open in IMG/M
3300003911\|JGI25405J52794_10085138	Not Available	697	Open in IMG/M
3300004114\|Ga0062593_101537615	Not Available	719	Open in IMG/M
3300004114\|Ga0062593_102234783	Not Available	614	Open in IMG/M
3300004156\|Ga0062589_100885604	Not Available	820	Open in IMG/M
3300004156\|Ga0062589_101108405	Not Available	749	Open in IMG/M
3300004463\|Ga0063356_100086491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3339	Open in IMG/M
3300004463\|Ga0063356_103696491	Not Available	659	Open in IMG/M
3300004463\|Ga0063356_104526892	Not Available	598	Open in IMG/M
3300004479\|Ga0062595_100055201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1848	Open in IMG/M
3300004479\|Ga0062595_101466821	Not Available	627	Open in IMG/M
3300004643\|Ga0062591_100789565	Not Available	874	Open in IMG/M
3300005093\|Ga0062594_100644863	Not Available	941	Open in IMG/M
3300005162\|Ga0066814_10022483	Not Available	888	Open in IMG/M
3300005164\|Ga0066815_10034448	Not Available	778	Open in IMG/M
3300005169\|Ga0066810_10007989	Not Available	1483	Open in IMG/M
3300005277\|Ga0065716_1003365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1246	Open in IMG/M
3300005289\|Ga0065704_10190855	Not Available	1190	Open in IMG/M
3300005290\|Ga0065712_10130584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1555	Open in IMG/M
3300005293\|Ga0065715_10116489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2379	Open in IMG/M
3300005293\|Ga0065715_10498894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	772	Open in IMG/M
3300005330\|Ga0070690_100681487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	788	Open in IMG/M
3300005330\|Ga0070690_101113696	Not Available	627	Open in IMG/M
3300005332\|Ga0066388_100497576	Not Available	1855	Open in IMG/M
3300005332\|Ga0066388_101500649	Not Available	1179	Open in IMG/M
3300005332\|Ga0066388_103839539	Not Available	767	Open in IMG/M
3300005338\|Ga0068868_100010504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6708	Open in IMG/M
3300005354\|Ga0070675_101390227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	647	Open in IMG/M
3300005365\|Ga0070688_100372171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1051	Open in IMG/M
3300005366\|Ga0070659_100647857	Not Available	911	Open in IMG/M
3300005455\|Ga0070663_101053360	Not Available	709	Open in IMG/M
3300005530\|Ga0070679_100166686	All Organisms → cellular organisms → Bacteria → Proteobacteria	2176	Open in IMG/M
3300005539\|Ga0068853_101434479	Not Available	668	Open in IMG/M
3300005543\|Ga0070672_100002310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12035	Open in IMG/M
3300005546\|Ga0070696_100653330	Not Available	853	Open in IMG/M
3300005618\|Ga0068864_100921564	Not Available	864	Open in IMG/M
3300005713\|Ga0066905_101293451	Not Available	656	Open in IMG/M
3300005713\|Ga0066905_102283817	Not Available	505	Open in IMG/M
3300005718\|Ga0068866_11352066	Not Available	519	Open in IMG/M
3300005719\|Ga0068861_100554328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1048	Open in IMG/M
3300005842\|Ga0068858_100798198	Not Available	921	Open in IMG/M
3300005843\|Ga0068860_102371480	Not Available	551	Open in IMG/M
3300005843\|Ga0068860_102430045	Not Available	544	Open in IMG/M
3300005937\|Ga0081455_10003604	All Organisms → cellular organisms → Bacteria	17762	Open in IMG/M
3300006196\|Ga0075422_10436245	Not Available	585	Open in IMG/M
3300006353\|Ga0075370_10513149	Not Available	724	Open in IMG/M
3300006581\|Ga0074048_13001087	Not Available	931	Open in IMG/M
3300006852\|Ga0075433_10164867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1972	Open in IMG/M
3300006871\|Ga0075434_102045104	Not Available	578	Open in IMG/M
3300006904\|Ga0075424_101827002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	643	Open in IMG/M
3300006914\|Ga0075436_100543854	Not Available	852	Open in IMG/M
3300006953\|Ga0074063_11982723	Not Available	563	Open in IMG/M
3300009011\|Ga0105251_10032312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2610	Open in IMG/M
3300009092\|Ga0105250_10227522	Not Available	792	Open in IMG/M
3300009094\|Ga0111539_10442513	Not Available	1513	Open in IMG/M
3300009101\|Ga0105247_10084082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2011	Open in IMG/M
3300009156\|Ga0111538_10831566	Not Available	1169	Open in IMG/M
3300009156\|Ga0111538_11476417	Not Available	857	Open in IMG/M
3300009177\|Ga0105248_10000423	All Organisms → cellular organisms → Bacteria → Proteobacteria	48361	Open in IMG/M
3300009177\|Ga0105248_11418719	Not Available	786	Open in IMG/M
3300009545\|Ga0105237_10893977	Not Available	895	Open in IMG/M
3300010046\|Ga0126384_10876877	Not Available	809	Open in IMG/M
3300010047\|Ga0126382_10259704	Not Available	1278	Open in IMG/M
3300010047\|Ga0126382_11548927	Not Available	612	Open in IMG/M
3300010362\|Ga0126377_10062456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3285	Open in IMG/M
3300010362\|Ga0126377_10172593	Not Available	2050	Open in IMG/M
3300010371\|Ga0134125_10268329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1896	Open in IMG/M
3300010400\|Ga0134122_10832305	Not Available	885	Open in IMG/M
3300010401\|Ga0134121_10322972	Not Available	1373	Open in IMG/M
3300012473\|Ga0157340_1027909	Not Available	513	Open in IMG/M
3300012476\|Ga0157344_1019121	Not Available	576	Open in IMG/M
3300012501\|Ga0157351_1005456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1021	Open in IMG/M
3300012510\|Ga0157316_1007304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	933	Open in IMG/M
3300012897\|Ga0157285_10351996	Not Available	517	Open in IMG/M
3300012902\|Ga0157291_10034899	Not Available	1107	Open in IMG/M
3300012907\|Ga0157283_10039844	Not Available	1021	Open in IMG/M
3300012909\|Ga0157290_10475874	Not Available	505	Open in IMG/M
3300012914\|Ga0157297_10214879	Not Available	674	Open in IMG/M
3300012948\|Ga0126375_10023728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2914	Open in IMG/M
3300012961\|Ga0164302_10160934	Not Available	1335	Open in IMG/M
3300012961\|Ga0164302_11431554	Not Available	566	Open in IMG/M
3300013306\|Ga0163162_10294706	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300014968\|Ga0157379_11441275	Not Available	668	Open in IMG/M
3300015371\|Ga0132258_10789967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2393	Open in IMG/M
3300015371\|Ga0132258_12766754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1223	Open in IMG/M
3300015372\|Ga0132256_100045664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4048	Open in IMG/M
3300015373\|Ga0132257_101149812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	981	Open in IMG/M
3300015374\|Ga0132255_100157310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3176	Open in IMG/M
3300019356\|Ga0173481_10000910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	6807	Open in IMG/M
3300019362\|Ga0173479_10000586	All Organisms → cellular organisms → Bacteria → Proteobacteria	7289	Open in IMG/M
3300023102\|Ga0247754_1043346	Not Available	1033	Open in IMG/M
3300023168\|Ga0247748_1000533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3655	Open in IMG/M
3300025900\|Ga0207710_10170149	Not Available	1065	Open in IMG/M
3300025903\|Ga0207680_10017032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3831	Open in IMG/M
3300025911\|Ga0207654_10276264	Not Available	1135	Open in IMG/M
3300025918\|Ga0207662_11043584	Not Available	581	Open in IMG/M
3300025926\|Ga0207659_10881356	Not Available	769	Open in IMG/M
3300025930\|Ga0207701_10288585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1426	Open in IMG/M
3300025941\|Ga0207711_10954931	Not Available	796	Open in IMG/M
3300025961\|Ga0207712_10534971	Not Available	1006	Open in IMG/M
3300025981\|Ga0207640_10030019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3344	Open in IMG/M
3300025986\|Ga0207658_10474363	Not Available	1111	Open in IMG/M
3300026035\|Ga0207703_11321321	Not Available	693	Open in IMG/M
3300026067\|Ga0207678_10129581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	2151	Open in IMG/M
3300026078\|Ga0207702_10799224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	932	Open in IMG/M
3300026664\|Ga0207558_101166	Not Available	570	Open in IMG/M
3300026814\|Ga0207586_101862	Not Available	688	Open in IMG/M
3300026822\|Ga0207498_105913	Not Available	576	Open in IMG/M
3300026836\|Ga0207612_1001886	Not Available	861	Open in IMG/M
3300026995\|Ga0208761_1010324	Not Available	794	Open in IMG/M
3300027397\|Ga0207463_100024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1951	Open in IMG/M
3300027410\|Ga0207541_106632	Not Available	534	Open in IMG/M
3300027424\|Ga0209984_1014987	Not Available	1028	Open in IMG/M
3300027523\|Ga0208890_1030826	Not Available	808	Open in IMG/M
3300027560\|Ga0207981_1034812	Not Available	916	Open in IMG/M
3300027876\|Ga0209974_10410486	Not Available	533	Open in IMG/M
3300027907\|Ga0207428_10009843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8563	Open in IMG/M
3300028889\|Ga0247827_10143148	Not Available	1260	Open in IMG/M
3300031547\|Ga0310887_10014746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2959	Open in IMG/M
3300031547\|Ga0310887_10030629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2247	Open in IMG/M
3300031547\|Ga0310887_10746773	Not Available	611	Open in IMG/M
3300031562\|Ga0310886_10000726	All Organisms → cellular organisms → Bacteria	9270	Open in IMG/M
3300031716\|Ga0310813_10208643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1606	Open in IMG/M
3300031716\|Ga0310813_12210126	Not Available	521	Open in IMG/M
3300031847\|Ga0310907_10009562	All Organisms → cellular organisms → Bacteria	2959	Open in IMG/M
3300031913\|Ga0310891_10112015	Not Available	850	Open in IMG/M
3300032174\|Ga0307470_10020909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2944	Open in IMG/M
3300032180\|Ga0307471_104128734	Not Available	513	Open in IMG/M
3300032211\|Ga0310896_10107787	Not Available	1258	Open in IMG/M
3300032421\|Ga0310812_10222619	Not Available	824	Open in IMG/M
3300033412\|Ga0310810_10339721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1587	Open in IMG/M
3300033412\|Ga0310810_10770688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	876	Open in IMG/M
3300033412\|Ga0310810_11301479	Not Available	572	Open in IMG/M
3300033475\|Ga0310811_10528891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1220	Open in IMG/M
3300034820\|Ga0373959_0158617	Not Available	576	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.17%
Host-Associated	Host-Associated	47.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.17%
Plants	Host-Associated → Plants	47.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.74%
Roots	Host-Associated → Plants → Roots	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.20%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.49%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.25%
Loam	Environmental → Terrestrial → Soil → Loam	7.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.97%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.49%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.72%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	10.14%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.07%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.35%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.62%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.17%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.45%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.45%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300003349	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012510	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300023168	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S064-202C-5	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026664	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-C (SPAdes)	Environmental	Open in IMG/M
3300026814	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-10 (SPAdes)	Environmental	Open in IMG/M
3300026822	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1-12 (SPAdes)	Environmental	Open in IMG/M
3300026836	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-10 (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027397	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-11 (SPAdes)	Environmental	Open in IMG/M
3300027410	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-12 (SPAdes)	Environmental	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2213815268	2209111006	Arabidopsis Rhizosphere	MRVVESMKHLAPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC
ARcpr5yngRDRAFT_0007534	3300000043	Arabidopsis Rhizosphere	MKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
JGI24743J22301_100333791	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	TDVPDLTVEWEHRHHMRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC*
JGI26129J50193_10133062	3300003349	Arabidopsis Thaliana Rhizosphere	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLV
JGI25405J52794_100851382	3300003911	Tabebuia Heterophylla Rhizosphere	MKYLVAALALVLAGSAVAKAADINFGEVRTRYQIRNELTAWERLRPWDVGSDVGWDAGWRRTTLWQDGRTFRTEFAPPGCTITRLVTTRSGTSLQKLFIC*
Ga0062593_1015376152	3300004114	Soil	MRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0062593_1022347832	3300004114	Soil	MKYLVPALALILVGSAAARAADINFGEVRTRYQIRNELTARERLRPWDVDWRHTYAWQHGRTFRTEFAPPGCTIRRLVTTPSGTDLQELFIC*
Ga0062589_1008856042	3300004156	Soil	MKHLVLASALILAGSTAAKPSDINFGETRTRFQIENELTAWERLRPWDADWRHTTVWQHGRDLRTEFAPPGCTITRLVTTRSGTSLQQLFIC*
Ga0062589_1011084052	3300004156	Soil	MSYLAFALVLFGSIVAQAQAADINFGEARTRFQIQNEPTAKERLRPWAVDWRHTYAWQHGTSKWRGSFAPPGCFITRWVVTPSSAGMQELFIC*
Ga0063356_1000864913	3300004463	Arabidopsis Thaliana Rhizosphere	MKYLTLAFALILAGSAAAKAADINFGETRTRFQIQNELTASERLRPWNVDWRHTYLWQHGQTLRTEFAPPGCTIRRWVTTPSGTQLRELFIC*
Ga0063356_1036964912	3300004463	Arabidopsis Thaliana Rhizosphere	MKYLVPALVLILVGSAAARAADINFGEVRTRYQIRNELTARERLRPWDVDWRHTYAWQHGRTFRTEFAPPGCTIRRLVTTPSGTDLQELFIC*
Ga0063356_1045268921	3300004463	Arabidopsis Thaliana Rhizosphere	EHRHHMRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC*
Ga0062595_1000552014	3300004479	Soil	MKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC*
Ga0062595_1014668211	3300004479	Soil	MKHLAPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0062591_1007895652	3300004643	Soil	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTPLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC*
Ga0062594_1006448632	3300005093	Soil	MKHLVLACVLVLSGSAVAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC*
Ga0066814_100224832	3300005162	Soil	LPDLKVKRESRHYIRVVESMKHLAPALALVLVGSAAAKAADINFGEVRTRYQIRNELTAWERVRPWDVDWRHTQIWQDGRTLRTEFAPPGCTITRLVTTPSGTQLQELFIC*
Ga0066815_100344482	3300005164	Soil	MKHLAPALALVLVGSAAAKAADINFGEVRTRYQIRNELTAWERVRPWDVDWRHTQIWQDGRTLRTEFAPPGCTITRLVTTPSGTQLQELFIC*
Ga0066810_100079892	3300005169	Soil	MKHLVPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRSLRTEFAPPGCYITRLVTTPSGTEMPELFIC*
Ga0065716_10033654	3300005277	Arabidopsis Rhizosphere	LQGHADLPNLKVKRERGHYMRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0065704_101908552	3300005289	Switchgrass Rhizosphere	MRVVESMKHLAPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0065712_101305842	3300005290	Miscanthus Rhizosphere	MKHLVLACVLVLSGSAVAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRTCYITRYVTTRSGTSLQELFIC*
Ga0065715_101164895	3300005293	Miscanthus Rhizosphere	ERGHYMRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0065715_104988942	3300005293	Miscanthus Rhizosphere	MKHLVLASGLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC*
Ga0070690_1006814872	3300005330	Switchgrass Rhizosphere	MKHLVLAPVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC*
Ga0070690_1011136961	3300005330	Switchgrass Rhizosphere	MKYLVPALALILVGSAAARAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0066388_1004975762	3300005332	Tropical Forest Soil	MKYLVAGLALVLAGSAVAKAADINFGEVRTRYQIRNELTAWERLRPWDVGWRRTTLWQDGRTFRTEFAPPGCTITRLVTTRSGTSLQELFIC*
Ga0066388_1015006491	3300005332	Tropical Forest Soil	MKHLVLASAFILTGSAAATAADINFGETRTRFQVENELTAWQRLHPWDVDWRHTQLWQHGRAFRTEFAPPGCYINRLVTTRSGTRWEQQFIC*
Ga0066388_1038395392	3300005332	Tropical Forest Soil	MVDATKYLVLASALVLAGSAVASAESRGIEARTRYRVQNELTAWERLRPWDAGWRHTTLWQDGRTFRTEFAPRGCYITRLVTTRSGTWLQELFIC*
Ga0068868_1000105049	3300005338	Miscanthus Rhizosphere	VESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTQFAPPGCTITRLVTTRSGTRLEELFIC*
Ga0070675_1013902272	3300005354	Miscanthus Rhizosphere	ALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0070688_1003721712	3300005365	Switchgrass Rhizosphere	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRTCYITRYVTTRSGTSLQELFIC*
Ga0070659_1006478571	3300005366	Corn Rhizosphere	MRVVESMKHLAPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGT
Ga0070663_1010533602	3300005455	Corn Rhizosphere	MRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTT
Ga0070679_1001666865	3300005530	Corn Rhizosphere	MKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTVWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTT
Ga0068853_1014344791	3300005539	Corn Rhizosphere	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC*
Ga0070672_1000023109	3300005543	Miscanthus Rhizosphere	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC*
Ga0070696_1006533301	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLVPALALILVGSAAARAADINFGEVRTRYQIRNELTARERLRPWDVDWRHTYAWQHGRSVRSEFAPAGCYIRRWVTTPSGTELQELFIC*
Ga0068864_1009215641	3300005618	Switchgrass Rhizosphere	AQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC*
Ga0066905_1012934512	3300005713	Tropical Forest Soil	MKYLIAAFALMAGSAAVMAADINFGEVRTRYQVENELTAAERLRPWDVDWRHTHLWQQGRTLRTEFAPPGCTITRLVTTRSGTSLQELFIC*
Ga0066905_1022838171	3300005713	Tropical Forest Soil	MKYHVFRYLLLASALVLAGSAVASAKSRGIEARTRYRIQNELTAWERLRPWDVGWRHTTLWQDRRTLRTEFAPPGCYITRLVTTRSGTSLQELFIC*
Ga0068866_113520661	3300005718	Miscanthus Rhizosphere	MRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERVRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0068861_1005543281	3300005719	Switchgrass Rhizosphere	ATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0068858_1007981982	3300005842	Switchgrass Rhizosphere	MKHLVLASGLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC*
Ga0068860_1023714801	3300005843	Switchgrass Rhizosphere	MKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQ
Ga0068860_1024300452	3300005843	Switchgrass Rhizosphere	VESMKYLVPALALILVGSAAARAADINFGEVRTRYQIRNELTARERLRPWDVDWRHTYAWQHGRTFRTEFAPPGCTIRRLVTTPSGTDLQELFIC*
Ga0081455_100036048	3300005937	Tabebuia Heterophylla Rhizosphere	MKYLVAALALVLAGSAVAKAADINFGEVRTRYQIRNELTAWERLRPWDVGSDVGWDSGWRRTTLWQDGRTFRTEFAPPGCTITRLVTTRSGTSLQKLFIC*
Ga0075422_104362451	3300006196	Populus Rhizosphere	HLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC*
Ga0075370_105131491	3300006353	Populus Endosphere	RRHRMRVVESMKHLVLAPVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC*
Ga0074048_130010871	3300006581	Soil	FQRHADLPNLKVKRERRHYIRVVESMKHLVPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRSLRTEFAPPGCYITRLVTTPSGTEMRELFIC*
Ga0075433_101648673	3300006852	Populus Rhizosphere	LPNLKVKRERGHYMRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0075434_1020451042	3300006871	Populus Rhizosphere	GEVRTRFQIQNDPGWKELQPPWAVNWRHTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC*
Ga0075424_1018270022	3300006904	Populus Rhizosphere	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPGWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTS
Ga0075436_1005438542	3300006914	Populus Rhizosphere	MKHLVLVSALILAGSAAAKAADINFGETRTRFEVRNELTTWERLRPWDVDWRHTTLWQHGRTLRTEFAPPGCYITRYVTTRSGTSLQELFIC*
Ga0074063_119827231	3300006953	Soil	VVESMKHLVPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERVRPWDVDWRHTQIWQDGRTLRTEFAPPGCTITRLVTTPSGTQLQELFIC*
Ga0105251_100323125	3300009011	Switchgrass Rhizosphere	MRVVESMKHLVLAPVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRTCYITRYVTTRSGTSLQELFIC*
Ga0105250_102275222	3300009092	Switchgrass Rhizosphere	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRTFRTAFAPRSCHITRYVTTPSGTSLQELFIC*
Ga0111539_104425132	3300009094	Populus Rhizosphere	MKHLVLALALILAGSPAATAADINFGETRTRFQIRNELTAWERLRPWDVDWRHTYAWQDGRSFRTEFAPPGCTITRLVTTRSGPRLQELFIC*
Ga0105247_100840824	3300009101	Switchgrass Rhizosphere	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC*
Ga0111538_108315661	3300009156	Populus Rhizosphere	MKHLVLALALILAGSTAAKTADINFGETRTRFQIRNELTAWERLRPWDVDWRHTYAWQDGRSFRTEFAPPGCTITRLVTTRSGPRLQELFIC*
Ga0111538_114764173	3300009156	Populus Rhizosphere	MKHLVLALALILAGSPAATAADINFGETRTRFQIRNELTAWERLRPWDVDWRHTSIWQDGRSFRTEFAPPGCTITRLVTTRSG
Ga0105248_100004238	3300009177	Switchgrass Rhizosphere	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTVWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC*
Ga0105248_114187192	3300009177	Switchgrass Rhizosphere	AVAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC*
Ga0105237_108939771	3300009545	Corn Rhizosphere	KAADINFGEVRTRYQIRNELTARERLRPWDVDWRHTYAWQHGRTFRTEFAPPGCTIRRLVTTPSGTDLQELFIC*
Ga0126384_108768771	3300010046	Tropical Forest Soil	MKYHVFRYLLLASALVLAGSAVASAESRGTEARTRYRIQNELTAWERLHPWEVDWRHTTLWQEGRTLRAEFAPRGCTIARFVTTRSGTRLRELFIC*
Ga0126382_102597043	3300010047	Tropical Forest Soil	MKYHVFRYLLLASALVLAGSAVASAESRGIEARTRYRIQNELTAWERLRPWGVGWGVGWNAGWRRTTLWQDGRTLRTEFAPPGCYITRLVTTRSGTSLQELFIC*
Ga0126382_115489272	3300010047	Tropical Forest Soil	MTDTRRTATANRERRHHIRVIESMQYLPAAFALILAGGAVAKAADINFGEVRTRYQIQHELTAWERLRPWDAGWRSTTLWQVGRTFRTEFAPRGCYITRLVTTPSGTRLQDLF
Ga0126377_100624565	3300010362	Tropical Forest Soil	MKYHVFRCLLLASALVLAGSAVASAESRGTEARTRYRIQNELTAWERLRPWGVGWGVGWGAGWNAGWRHTTLWQDGRTLRTEFAPPGCYITRLVTTRSGTSLQELFIC*
Ga0126377_101725932	3300010362	Tropical Forest Soil	MRQIRVLDSMKYLAAALALMAGSTLATAADINFGEVRTRYQVENELTAAERLRPWDVDWRHTHLWQQGRAFGPDFAPRGCYITRLVTTRSGSRWEQLYIC*
Ga0134125_102683294	3300010371	Terrestrial Soil	MKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTIT
Ga0134122_108323052	3300010400	Terrestrial Soil	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPGWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC*
Ga0134121_103229723	3300010401	Terrestrial Soil	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNHPGWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC*
Ga0157340_10279091	3300012473	Arabidopsis Rhizosphere	MRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCFITRLVTTPSGTQLQELFIC*
Ga0157344_10191212	3300012476	Arabidopsis Rhizosphere	MRVVESMKHLAPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQL
Ga0157351_10054563	3300012501	Unplanted Soil	AKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0157316_10073042	3300012510	Arabidopsis Rhizosphere	MWVVESMKHLVPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0157285_103519961	3300012897	Soil	MRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQE
Ga0157291_100348993	3300012902	Soil	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVMTRSGTRLEELFIC*
Ga0157283_100398442	3300012907	Soil	MRVVESMKHLAPALALILVGSATAKAADINFGEVRTLYQIRSELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0157290_104758742	3300012909	Soil	MKHLVPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLRTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0157297_102148791	3300012914	Soil	LSDLKVKRERRHYIGVVESMKHLVPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0126375_100237284	3300012948	Tropical Forest Soil	MKYHVFRYLLLASALVLAGSAVASAESRGTEARTRYRIQNELTAWERLRPWGVGWGVGWNAGWRHTTLWQDGRTLRTEFAPPGCYITRLVTTRSGTSLQELFIC*
Ga0164302_101609341	3300012961	Soil	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFICGRSG*
Ga0164302_114315541	3300012961	Soil	PALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
Ga0163162_102947063	3300013306	Switchgrass Rhizosphere	MRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYAWQHGRTFRTEFAPPGCTISRLVTTPSGTHHHEPF
Ga0157379_114412751	3300014968	Switchgrass Rhizosphere	MRVVESMKHLVLACVLVLSGSAVAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC*
Ga0132258_107899671	3300015371	Arabidopsis Rhizosphere	VTETAMKYPVFENLLLASALVLAGSTVAKAANINFGEVRPRYQIQNELTAWERLRPWDVGWRHTILWQDGRTFRTEFAPRTCYITRLVTTKRAGTRLEELFIC*
Ga0132258_127667543	3300015371	Arabidopsis Rhizosphere	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIENELTAWERLRPWDVDWRHTPLWQHGRALRTEFAPPGCTITRYVTTRSGTRLEELFIC*
Ga0132256_1000456642	3300015372	Arabidopsis Rhizosphere	VTETAMKYPVFENLLLASALVLAGSTVAKAANINFGEVRTRYQIQNELTAWERLRPWDVGWRHTTLWQDGRTFRTEFAPRTCYITRLVTTKRAGTRLEELFIC*
Ga0132257_1011498121	3300015373	Arabidopsis Rhizosphere	MKHLVLAPVLVLSGSAIAQAADINFGEVRTRFQVQHDPAWKELQPPWAVNWRHTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC*
Ga0132255_1001573102	3300015374	Arabidopsis Rhizosphere	VTETAMKYPVFENLLLASALVLAGSTVAKAANINFGEVRPRYQIQNELTAWERLRPWDVGWRHTTLWQDGRTFRTEFAPRTCYITRLVTTKRAGTRLEELFIC*
Ga0173481_100009109	3300019356	Soil	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0173479_100005865	3300019362	Soil	MKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0247754_10433461	3300023102	Soil	MKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQL
Ga0247748_10005336	3300023168	Soil	WEHRHHMRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0207710_101701492	3300025900	Switchgrass Rhizosphere	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC
Ga0207680_100170321	3300025903	Switchgrass Rhizosphere	MKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTR
Ga0207654_102762642	3300025911	Corn Rhizosphere	MRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC
Ga0207662_110435841	3300025918	Switchgrass Rhizosphere	MKHLVLASGLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRHTTLWQDGRTFRTEFAPRSCYITRYVTTRS
Ga0207659_108813561	3300025926	Miscanthus Rhizosphere	ALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC
Ga0207701_102885854	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	LPNLKVKRERGHYMRVVESMKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC
Ga0207711_109549311	3300025941	Switchgrass Rhizosphere	LVLSGSAVAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC
Ga0207712_105349711	3300025961	Switchgrass Rhizosphere	MKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC
Ga0207640_100300191	3300025981	Corn Rhizosphere	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSG
Ga0207658_104743631	3300025986	Switchgrass Rhizosphere	MKHLVLASGLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC
Ga0207703_113213212	3300026035	Switchgrass Rhizosphere	MKHLVLASGLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC
Ga0207678_101295812	3300026067	Corn Rhizosphere	MKHLAPALALILVGSATAKAADINFGEVRTRYQIRNELTARERLRPWDVDWRHTYAWQHGRTFRTEFAPPGCTIRRLVTTPSGTDLQELFIC
Ga0207702_107992242	3300026078	Corn Rhizosphere	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTPLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC
Ga0207558_1011661	3300026664	Soil	PDLTVEWEHRHHMRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0207586_1018621	3300026814	Soil	MKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTVWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRIRPTALILI
Ga0207498_1059131	3300026822	Soil	TVEWEHRHHMRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0207612_10018862	3300026836	Soil	KHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0208761_10103242	3300026995	Soil	MKHLAPALALVLVGSAAAKAADINFGEVRTRYQIRNELTAWERVRPWDVDWRHTQIWQDGRTLRTEFAPPGCTITRLVTTPSGTQLQELFIC
Ga0207463_1000244	3300027397	Soil	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGT
Ga0207541_1066321	3300027410	Soil	MKQLLFASALILVGSNVAKAAEINFGEVRTRYQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0209984_10149871	3300027424	Arabidopsis Thaliana Rhizosphere	MKHLVPALALILVGSAAAKAADINFGETRTRFQIRNELTAWERLRPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0208890_10308261	3300027523	Soil	MKHLVPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRSLRTEFAPPGCYITRLVTTPSGTEMPELFIC
Ga0207981_10348122	3300027560	Soil	MKHLVPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERVRPWDVDWRHTQIWQDGRTLRTEFAPPGCTIT
Ga0209974_104104861	3300027876	Arabidopsis Thaliana Rhizosphere	LSDLKVKRERRHYIWVVESMKHLVPALALILVGSAAAKAADINFGETRTRFQIRNELTAWERLRPWDVDWRHTYAWQHGRTLRTEFAPPGCYIRRLVTTPSGTNLQELFIC
Ga0207428_1000984311	3300027907	Populus Rhizosphere	MKHLAPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC
Ga0247827_101431481	3300028889	Soil	VLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0310887_100147461	3300031547	Soil	ILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0310887_100306291	3300031547	Soil	VGSATAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC
Ga0310887_107467732	3300031547	Soil	PALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRSLRTEFAPPGCYITRLVTTPSGTEMRELFIC
Ga0310886_100007269	3300031562	Soil	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPLGCTITRLVTTRSGTRLEELFIC
Ga0310813_102086432	3300031716	Soil	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTPSGTSLQELFIC
Ga0310813_122101261	3300031716	Soil	MKYLTLAFALILVGSAAAKAADINFGETRTRFQIQNELTASERLRPWNVDWRHTYLWQHGQTLRTEFAPPGCTIRRWVTTPSGTQLRELFIC
Ga0310907_100095625	3300031847	Soil	LPNLKVKRERGHYMRVVESMKHLAPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC
Ga0310891_101120152	3300031913	Soil	MKHLAPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRSLRTEFAPPGCYITRLVT
Ga0307470_100209094	3300032174	Hardwood Forest Soil	MKYPVFRYLLLASALVLAGSAVASAESRGIEARTRYRIQNELTAWERLRPWDAGWRHTTLWQDGRTLRTEFAPPGCTITRLVTTRSGTSLQELFIC
Ga0307471_1041287342	3300032180	Hardwood Forest Soil	MSRRNRPVTMKYPVFRYLLLASALVVAGSAVESAESRGVEARTRYRIQNELTAWERLRPWDAGWRHTTLWQVGRTFRTEFAPRGCYITRLVTTRSGTTLQELFIC
Ga0310896_101077871	3300032211	Soil	MRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEE
Ga0310812_102226192	3300032421	Soil	MKHLVLASVLVLSGSAIAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRTCYITRYVTTRSGTSLQELFIC
Ga0310810_103397211	3300033412	Soil	MKHLVLACVLVLSGSAVAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRSCYITRYVTTRSGTSLQELFIC
Ga0310810_107706881	3300033412	Soil	MKYLTLAFALILAGSAAAKAADINFGETRTRFQIQNELTASERLRPWNVDWRHTYLWQHGQTLRTEFAPPGCTIRRWVTTPSGTQLRELFIC
Ga0310810_113014791	3300033412	Soil	MKYLTLAFALILAGSAAAKAADINFGETRTRFQIQNELTASERLRPWDVDWRHTYLWQHGQTLRTEFAPPGCTIRRWVTTPSGTQLRELFIC
Ga0310811_105288912	3300033475	Soil	MKHLVLACVLVLSGSAVAQAADINFGEVRTRFQIQNDPAWKELQPPWAVNWRNTTLWQDGRTFRTEFAPRTCYITRYVTTRSGTSLQELFIC
Ga0373959_0158617_337_576	3300034820	Rhizosphere Soil	MKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055839

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences