3300027323: Deep oceanic, basalt-hosted subsurface ecosystem from Juan de Fuca Ridge flank, Pacific Ocean, CORK Borehole 1362B_J2.571 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027323
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0090290 | Gp0057578 | Ga0209426
• Sample Name: Deep oceanic, basalt-hosted subsurface ecosystem from Juan de Fuca Ridge flank, Pacific Ocean, CORK Borehole 1362B_J2.571 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 271974198
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM19-C184	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Oceanic, Basalt-Hosted Subsurface Hydrothermal Fluid → Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → volcano → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Juan de Fuca Ridge flank, Pacific Ocean
• Coordinates
  • Lat. (^o): 47.76
  • Long. (^o): -127.76
  • Alt. (m): N/A
  • Depth (m): 290

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031707	Metagenome / Metatranscriptome	182	N
F036104	Metagenome / Metatranscriptome	170	Y
F038695	Metagenome / Metatranscriptome	165	Y
F052632	Metagenome / Metatranscriptome	142	Y
F065686	Metagenome	127	N
F073072	Metagenome	120	Y
F087900	Metagenome	110	N
F102074	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209426_1003248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides	6425
Ga0209426_1037143	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM19-C184	999
Ga0209426_1069520	All Organisms → cellular organisms → Bacteria	625
Ga0209426_1074412	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	595
Ga0209426_1079209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	569
Ga0209426_1087025	Not Available	533
Ga0209426_1089386	Not Available	524
Ga0209426_1090963	Not Available	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209426_1003248	Ga0209426_10032484	F036104	MGQDGIPVSIGMIIAAAILGACFVLGMVLMAVLFASG
Ga0209426_1037143	Ga0209426_10371431	F087900	VQQKINFYYCQVEDEDNHFPLAIARFTAYDQDHRPLSVEQVTYESDSNYFQRQVSAALSCGVDVSVITATPMEDFAWINQLSEHA
Ga0209426_1069520	Ga0209426_10695201	F065686	MILISKPEVERLLDKLQRAEGYCRNARSSSPFNPETDINAEPWEFFVGSSGFAGAVMRDAIQSLESHLN
Ga0209426_1074412	Ga0209426_10744122	F073072	VKMKKVVFIYARLVEDPEAYQGKTNADIEKEILEEIGPIPYVTLIEKVTVLDCP
Ga0209426_1079209	Ga0209426_10792091	F052632	MLINGVNLMHHLNRCRLKLQKHMLEEKQLRSPNLLMQPKNLVEAIHQLFQDLSQSLRKLSSLYD
Ga0209426_1087025	Ga0209426_10870252	F038695	MPIPKQKYKELKAYYDFQRKVSYNKEKLRGAVEVMLEQPDLLFNDIW
Ga0209426_1089386	Ga0209426_10893861	F031707	MAFLNWIQEATGCKVEDDRTGMIHTITGGKFLADSPMWPMIELTDETGVVRFATLDRFEEMISVG
Ga0209426_1090963	Ga0209426_10909632	F102074	MASIDASISLCSFDTKYLMRKLATLTKMTAKGLSTWTFAQCDSVYVAFGGTTNRCRVFTTHAQLQDCMLNYASYGYQVERHTTKRRWDGATPKPIKRVPPSMQQ