3300027283: Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/37_all (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027283
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0103000 | Gp0061309 | Ga0209643
• Sample Name: Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/37_all (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 287083245
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Surbsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → borehole → clay soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mt. Terri, Switzerland
• Coordinates
  • Lat. (^o): 47.379
  • Long. (^o): 7.1648
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025775	Metagenome	200	Y
F028303	Metagenome	192	Y
F049077	Metagenome / Metatranscriptome	147	Y
F080453	Metagenome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209643_1000039	All Organisms → cellular organisms → Bacteria	381070
Ga0209643_1000415	All Organisms → cellular organisms → Bacteria	82047
Ga0209643_1044070	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793
Ga0209643_1057904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209643_1000039	Ga0209643_100003981	F025775	MKQLFTFQGFPMVVVVALVVWSWISILSVLIAAFF
Ga0209643_1000415	Ga0209643_100041523	F049077	MDLDPFFPSMANTVGALLPALISFGIVLARRARSGLGLADQLWVIVVSIALSVALSRVTITPDVTALHFMPGATVALCYLVWCGHYISPGLAFATTYATCLPVDFFLAQLLFGADFNPESIGGAGWRDGLLVFPTLTALAVMYANWRSLHAGGTRLIGFGQQTGGHALDWARGHLKRHGVAGR
Ga0209643_1044070	Ga0209643_10440701	F028303	MMTKIEVEISGELSRQIERIVRDGWFPSEEALAQEALQQFVEAKSFLGDSPRMLKRFAADALNESKPDTALKF
Ga0209643_1057904	Ga0209643_10579042	F080453	AGPFQTRLWSRLQPAEGDDYFLSSVNFSETKHYVRKVMNSYRRYGEIYEGGPVSGGIPAE