Sample 3300027116

Overview

Basic Information
IMG/M Taxon OID	3300027116 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0055661 \| Ga0207539
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-11 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	23624174
Sequencing Scaffolds	17
Novel Protein Genes	18
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.2958	Long. (^o)	-89.3799	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F001757	Metagenome / Metatranscriptome	641	N
F016050	Metagenome / Metatranscriptome	250	Y
F030160	Metagenome / Metatranscriptome	186	Y
F032172	Metagenome / Metatranscriptome	180	Y
F047321	Metagenome / Metatranscriptome	150	Y
F048418	Metagenome / Metatranscriptome	148	Y
F049092	Metagenome	147	N
F054170	Metagenome	140	Y
F058224	Metagenome / Metatranscriptome	135	Y
F059114	Metagenome	134	N
F066928	Metagenome / Metatranscriptome	126	Y
F070493	Metagenome / Metatranscriptome	123	Y
F077482	Metagenome	117	N
F079256	Metagenome / Metatranscriptome	116	N
F080403	Metagenome	115	Y
F088977	Metagenome / Metatranscriptome	109	N
F090709	Metagenome	108	Y

Family

Category

Number of Sequences

3D Structure?

F000268

Metagenome / Metatranscriptome

1411

F001757

Metagenome / Metatranscriptome

641

F016050

Metagenome / Metatranscriptome

250

F030160

Metagenome / Metatranscriptome

186

F032172

Metagenome / Metatranscriptome

180

F047321

Metagenome / Metatranscriptome

150

F048418

Metagenome / Metatranscriptome

148

F049092

Metagenome

147

F054170

Metagenome

140

F058224

Metagenome / Metatranscriptome

135

F059114

Metagenome

134

F066928

Metagenome / Metatranscriptome

126

F070493

Metagenome / Metatranscriptome

123

F077482

Metagenome

117

F079256

Metagenome / Metatranscriptome

116

F080403

Metagenome

115

F088977

Metagenome / Metatranscriptome

109

F090709

Metagenome

108

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207539_100519	Not Available	926	Open in IMG/M
Ga0207539_100542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	915	Open in IMG/M
Ga0207539_100555	Not Available	911	Open in IMG/M
Ga0207539_100670	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
Ga0207539_100684	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
Ga0207539_101016	Not Available	782	Open in IMG/M
Ga0207539_101191	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
Ga0207539_101596	Not Available	693	Open in IMG/M
Ga0207539_101903	Not Available	660	Open in IMG/M
Ga0207539_101979	Not Available	652	Open in IMG/M
Ga0207539_102432	Not Available	619	Open in IMG/M
Ga0207539_103107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	575	Open in IMG/M
Ga0207539_103607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	546	Open in IMG/M
Ga0207539_104286	Not Available	518	Open in IMG/M
Ga0207539_104470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
Ga0207539_104554	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
Ga0207539_104606	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	506	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207539_100519

Not Available

926

Open in IMG/M

Ga0207539_100542

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis

915

Open in IMG/M

Ga0207539_100555

Not Available

911

Open in IMG/M

Ga0207539_100670

All Organisms → cellular organisms → Bacteria

868

Open in IMG/M

Ga0207539_100684

All Organisms → cellular organisms → Bacteria

864

Open in IMG/M

Ga0207539_101016

Not Available

782

Open in IMG/M

Ga0207539_101191

All Organisms → cellular organisms → Bacteria

750

Open in IMG/M

Ga0207539_101596

Not Available

693

Open in IMG/M

Ga0207539_101903

Not Available

660

Open in IMG/M

Ga0207539_101979

Not Available

652

Open in IMG/M

Ga0207539_102432

Not Available

619

Open in IMG/M

Ga0207539_103107

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

575

Open in IMG/M

Ga0207539_103607

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

546

Open in IMG/M

Ga0207539_104286

Not Available

518

Open in IMG/M

Ga0207539_104470

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

511

Open in IMG/M

Ga0207539_104554

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

508

Open in IMG/M

Ga0207539_104606

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

506

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207539_100519	Ga0207539_1005192	F054170	AGNKRQLSAIDLEETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS
Ga0207539_100542	Ga0207539_1005421	F048418	ARRQAAAHAIDWLGLWALSVAFCAIVLAGIAYFMIGDNTGASCILVGAAAIIAIVVRFGTDRDEARDEN
Ga0207539_100555	Ga0207539_1005551	F090709	AIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0207539_100670	Ga0207539_1006702	F080403	ANQERELAAYVAKAQTEIQRRESEWWQKQLGSEEVSAA
Ga0207539_100684	Ga0207539_1006841	F016050	MDIQPDANVEDQDRAKCGKNEAGGMESSGCWVRKHVGNRAADDRSDDAEHDCPKNRHGHVQYRFRDKARD
Ga0207539_101016	Ga0207539_1010161	F088977	MRTTSLAGVLSLSLSAPLFSQTFNQTATYIALMRSSVGGLPPVATSTLQGDLQDGVALAIRYGYVPSSSRMDLPSMNNFGLTAVLPTGTASTVSITGGLSSLSRGGSDAWIIGAGGDLRLTDWAFSQGRSAPHLRVAVNGQLDYSKPRESALIAGSVGLPLSIIRPNRPKQEMQVVPFVTPSFAFGNFNPDDDTGLSHESGARFMIGGGLGLY
Ga0207539_101191	Ga0207539_1011911	F000268	MRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTHPKTDIETFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGTSGVTFGFDKNGRMTFPDSFDR
Ga0207539_101596	Ga0207539_1015961	F079256	PGGLNKVAHNVSKTMKKAGRDTKAEVHRDASKTHQTLTKAGNDTKAQLKRTTGVTTHSPDANHKPGGVNKLARDVSHTSKTVGAKAKHSVKSASGEVHRDLTKAGKHAKEVVKDSVKKP
Ga0207539_101903	Ga0207539_1019031	F049092	MKFIEPAFDTGGDLWRPPLNVPDSDAHALNEKFARQSAELRLRLTEVLELHNVQQRQANELQDRYDDIDRLSQTVSALQEAVNQYKMGTAAAEDKIIILESEKAVLQAQLDVALEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRR
Ga0207539_101979	Ga0207539_1019791	F077482	HQWYASTLVLPIVILAYPSLRCGEAYELLLDRELSALDQFYAGWGTVIRMDENSEGQGPKDTMQDNEYRPAGGIKKFAEPTIQLRGTAEKIGLDRQSLSSFIGTKFLNEFAFLQSDFVFEKTYQTWEIGIFECETWTVGVNYPIAFHVQCAGGSMDEPREWHYASLGYGPADKTSETVRGTLDAIIQEYATFVRKASGKD
Ga0207539_102432	Ga0207539_1024321	F032172	VQIIRGRFGPSGGIVPELDKDGQVVPTGHFNNRLGFHALMQAVGVDERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF
Ga0207539_103107	Ga0207539_1031072	F066928	MSPADRYRALAAYLRTCAAREQRPEVRTQWTKLAQCYLRLAEQADQNSRADIVYEFDRSA
Ga0207539_103607	Ga0207539_1036072	F058224	MSELLGEVNRSIRDLASTVDPHDSSTWEFVCECGEEGCTERFGLPLARYDELKHTGVALLAPGHPPRRAEG
Ga0207539_103979	Ga0207539_1039791	F059114	GARMRPHLIYLVSRAVLLFLSVVAAIASMQATSFGFISVTMSPSREGFLWLSLAIVLVAFAALGIRVALDWRLSYWILFPAVFATLIFATFGTSILSLL
Ga0207539_104286	Ga0207539_1042861	F030160	VEQRLPVSVDALRVESYSATDDSIVILLRPKYSTAERAYSIPVECLQDLIIDLRRLSFSAPNAPYEKADSQTEPLLPLELSVAAE
Ga0207539_104470	Ga0207539_1044701	F070493	MESEQVQLGSVTFVLAETILRELCAKVTHHLVARHLRDYAGSSDA
Ga0207539_104554	Ga0207539_1045541	F001757	RGNFPCPVDIPMKERAIMMRVLKPLQDKATTGPGKKLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGIAQYYTEEASGLLRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV
Ga0207539_104606	Ga0207539_1046061	F047321	MKNKCSTRSTDPHYSLFTPRSPAIARRRRLGNSGFINLRALFALLLCFSGVALAILAGRDVSVRRASEPERYMPVPSAKGQSEAVGLERLEQYWHDRLTFPTGRFDPAWVRAAVAQHDRMATG

Scaffold ID

Protein ID

Family

Sequence

Ga0207539_100519

Ga0207539_1005192

F054170

AGNKRQLSAIDLEETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS

Ga0207539_100542

Ga0207539_1005421

F048418

ARRQAAAHAIDWLGLWALSVAFCAIVLAGIAYFMIGDNTGASCILVGAAAIIAIVVRFGTDRDEARDEN

Ga0207539_100555

Ga0207539_1005551

F090709

AIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK

Ga0207539_100670

Ga0207539_1006702

F080403

ANQERELAAYVAKAQTEIQRRESEWWQKQLGSEEVSAA

Ga0207539_100684

Ga0207539_1006841

F016050

MDIQPDANVEDQDRAKCGKNEAGGMESSGCWVRKHVGNRAADDRSDDAEHDCPKNRHGHVQYRFRDKARD

Ga0207539_101016

Ga0207539_1010161

F088977

MRTTSLAGVLSLSLSAPLFSQTFNQTATYIALMRSSVGGLPPVATSTLQGDLQDGVALAIRYGYVPSSSRMDLPSMNNFGLTAVLPTGTASTVSITGGLSSLSRGGSDAWIIGAGGDLRLTDWAFSQGRSAPHLRVAVNGQLDYSKPRESALIAGSVGLPLSIIRPNRPKQEMQVVPFVTPSFAFGNFNPDDDTGLSHESGARFMIGGGLGLY

Ga0207539_101191

Ga0207539_1011911

F000268

MRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTHPKTDIETFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGTSGVTFGFDKNGRMTFPDSFDR

Ga0207539_101596

Ga0207539_1015961

F079256

PGGLNKVAHNVSKTMKKAGRDTKAEVHRDASKTHQTLTKAGNDTKAQLKRTTGVTTHSPDANHKPGGVNKLARDVSHTSKTVGAKAKHSVKSASGEVHRDLTKAGKHAKEVVKDSVKKP

Ga0207539_101903

Ga0207539_1019031

F049092

MKFIEPAFDTGGDLWRPPLNVPDSDAHALNEKFARQSAELRLRLTEVLELHNVQQRQANELQDRYDDIDRLSQTVSALQEAVNQYKMGTAAAEDKIIILESEKAVLQAQLDVALEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRR

Ga0207539_101979

Ga0207539_1019791

F077482

HQWYASTLVLPIVILAYPSLRCGEAYELLLDRELSALDQFYAGWGTVIRMDENSEGQGPKDTMQDNEYRPAGGIKKFAEPTIQLRGTAEKIGLDRQSLSSFIGTKFLNEFAFLQSDFVFEKTYQTWEIGIFECETWTVGVNYPIAFHVQCAGGSMDEPREWHYASLGYGPADKTSETVRGTLDAIIQEYATFVRKASGKD

Ga0207539_102432

Ga0207539_1024321

F032172

VQIIRGRFGPSGGIVPELDKDGQVVPTGHFNNRLGFHALMQAVGVDERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF

Ga0207539_103107

Ga0207539_1031072

F066928

MSPADRYRALAAYLRTCAAREQRPEVRTQWTKLAQCYLRLAEQADQNSRADIVYEFDRSA

Ga0207539_103607

Ga0207539_1036072

F058224

MSELLGEVNRSIRDLASTVDPHDSSTWEFVCECGEEGCTERFGLPLARYDELKHTGVALLAPGHPPRRAEG

Ga0207539_103979

Ga0207539_1039791

F059114

GARMRPHLIYLVSRAVLLFLSVVAAIASMQATSFGFISVTMSPSREGFLWLSLAIVLVAFAALGIRVALDWRLSYWILFPAVFATLIFATFGTSILSLL

Ga0207539_104286

Ga0207539_1042861

F030160

VEQRLPVSVDALRVESYSATDDSIVILLRPKYSTAERAYSIPVECLQDLIIDLRRLSFSAPNAPYEKADSQTEPLLPLELSVAAE

Ga0207539_104470

Ga0207539_1044701

F070493

MESEQVQLGSVTFVLAETILRELCAKVTHHLVARHLRDYAGSSDA

Ga0207539_104554

Ga0207539_1045541

F001757

RGNFPCPVDIPMKERAIMMRVLKPLQDKATTGPGKKLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGIAQYYTEEASGLLRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV

Ga0207539_104606

Ga0207539_1046061

F047321

MKNKCSTRSTDPHYSLFTPRSPAIARRRRLGNSGFINLRALFALLLCFSGVALAILAGRDVSVRRASEPERYMPVPSAKGQSEAVGLERLEQYWHDRLTFPTGRFDPAWVRAAVAQHDRMATG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027116: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-11 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences