Metagenome / Metatranscriptome Family F070493

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070493
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	44 residues
Representative Sequence	MQFGSVTFVLAEAILRELGAKVTHHPVARHLGDHAGGSDAQTD
Number of Associated Samples	103
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.26 %
% of genes near scaffold ends (potentially truncated)	93.50 %
% of genes from short scaffolds (< 2000 bps)	94.31 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.374 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (21.138 % of family members)
Environment Ontology (ENVO)	Unclassified (41.463 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.724 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.03% β-sheet: 0.00% Coil/Unstructured: 61.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF02021	UPF0102	66.67
PF05872	HerA_C	14.63
PF08570	DUF1761	4.88
PF01152	Bac_globin	0.81
PF13432	TPR_16	0.81
PF13828	DUF4190	0.81
PF06472	ABC_membrane_2	0.81
PF04452	Methyltrans_RNA	0.81
PF08378	NERD	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	66.67
COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	Replication, recombination and repair [L]	14.63
COG1385	16S rRNA U1498 N3-methylase RsmE	Translation, ribosomal structure and biogenesis [J]	0.81
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.37 %
Unclassified	root	N/A	1.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.37 %
Unclassified	root	N/A	1.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.37 %
Unclassified	root	N/A	1.63 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	79.67 %
Unclassified	root	N/A	1.63 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	79.67 %
Unclassified	root	N/A	1.63 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	44.72 %
Unclassified	root	N/A	1.63 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	44.72 %
Unclassified	root	N/A	1.63 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1060180	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
2170459010\|GIO7OMY02I5KNO	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300000559\|F14TC_100520358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1018947	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300000956\|JGI10216J12902_107239260	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1264	Open in IMG/M
3300002911\|JGI25390J43892_10124671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300005178\|Ga0066688_10653911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	673	Open in IMG/M
3300005178\|Ga0066688_11012542	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300005179\|Ga0066684_10270775	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1120	Open in IMG/M
3300005180\|Ga0066685_10779540	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	649	Open in IMG/M
3300005186\|Ga0066676_10225942	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300005187\|Ga0066675_11131213	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	583	Open in IMG/M
3300005332\|Ga0066388_107120903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300005366\|Ga0070659_101328440	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	638	Open in IMG/M
3300005436\|Ga0070713_101511971	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	651	Open in IMG/M
3300005446\|Ga0066686_10728876	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	666	Open in IMG/M
3300005468\|Ga0070707_101756176	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	588	Open in IMG/M
3300005468\|Ga0070707_101765602	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	586	Open in IMG/M
3300005518\|Ga0070699_100458037	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300005518\|Ga0070699_100988206	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	772	Open in IMG/M
3300005535\|Ga0070684_101830123	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	573	Open in IMG/M
3300005553\|Ga0066695_10623157	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	643	Open in IMG/M
3300005554\|Ga0066661_10797808	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	552	Open in IMG/M
3300005554\|Ga0066661_10871802	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
3300005558\|Ga0066698_10253957	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300005561\|Ga0066699_11269879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300005566\|Ga0066693_10165925	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	837	Open in IMG/M
3300005568\|Ga0066703_10076242	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300005569\|Ga0066705_10552286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	714	Open in IMG/M
3300005764\|Ga0066903_103564496	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	838	Open in IMG/M
3300006031\|Ga0066651_10695359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300006049\|Ga0075417_10115871	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300006173\|Ga0070716_100409296	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300006794\|Ga0066658_10748616	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	545	Open in IMG/M
3300009012\|Ga0066710_102215076	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	802	Open in IMG/M
3300009012\|Ga0066710_102408498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	763	Open in IMG/M
3300009012\|Ga0066710_103455343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	599	Open in IMG/M
3300009012\|Ga0066710_103710768	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300009137\|Ga0066709_103533119	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	567	Open in IMG/M
3300009137\|Ga0066709_104043436	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300009137\|Ga0066709_104264622	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300009147\|Ga0114129_10973402	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300009162\|Ga0075423_11538162	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	714	Open in IMG/M
3300010040\|Ga0126308_10500962	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300010046\|Ga0126384_11153728	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	713	Open in IMG/M
3300010323\|Ga0134086_10175458	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	792	Open in IMG/M
3300010326\|Ga0134065_10022121	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1800	Open in IMG/M
3300010329\|Ga0134111_10066855	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1334	Open in IMG/M
3300010333\|Ga0134080_10032343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1999	Open in IMG/M
3300010333\|Ga0134080_10076855	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300010333\|Ga0134080_10298319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	722	Open in IMG/M
3300010336\|Ga0134071_10213471	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	954	Open in IMG/M
3300010337\|Ga0134062_10311524	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	748	Open in IMG/M
3300010364\|Ga0134066_10135110	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	758	Open in IMG/M
3300012200\|Ga0137382_10491604	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	871	Open in IMG/M
3300012201\|Ga0137365_10156795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1708	Open in IMG/M
3300012202\|Ga0137363_10105127	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2153	Open in IMG/M
3300012202\|Ga0137363_11301045	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	615	Open in IMG/M
3300012205\|Ga0137362_10587734	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	960	Open in IMG/M
3300012210\|Ga0137378_10299489	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1496	Open in IMG/M
3300012211\|Ga0137377_10320252	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1486	Open in IMG/M
3300012357\|Ga0137384_11458481	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300012359\|Ga0137385_10645331	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	887	Open in IMG/M
3300012532\|Ga0137373_10266235	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300012683\|Ga0137398_11033257	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300012923\|Ga0137359_11698966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300012929\|Ga0137404_10216631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1629	Open in IMG/M
3300012930\|Ga0137407_11738585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	594	Open in IMG/M
3300012955\|Ga0164298_11236955	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	568	Open in IMG/M
3300012986\|Ga0164304_10563504	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	844	Open in IMG/M
3300012989\|Ga0164305_12003834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300013308\|Ga0157375_10588428	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300014154\|Ga0134075_10205021	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	848	Open in IMG/M
3300014157\|Ga0134078_10623585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300015264\|Ga0137403_10518086	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300015356\|Ga0134073_10021979	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300015357\|Ga0134072_10395146	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300017657\|Ga0134074_1055858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1337	Open in IMG/M
3300017657\|Ga0134074_1192867	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	721	Open in IMG/M
3300018482\|Ga0066669_10301630	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1301	Open in IMG/M
3300019879\|Ga0193723_1098298	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	828	Open in IMG/M
3300019882\|Ga0193713_1055410	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300019890\|Ga0193728_1307027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	598	Open in IMG/M
3300019998\|Ga0193710_1012499	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300020002\|Ga0193730_1001929	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5635	Open in IMG/M
3300020006\|Ga0193735_1000481	All Organisms → cellular organisms → Bacteria	12670	Open in IMG/M
3300020006\|Ga0193735_1036487	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300020010\|Ga0193749_1013806	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1578	Open in IMG/M
3300020018\|Ga0193721_1079493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	851	Open in IMG/M
3300020021\|Ga0193726_1246473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	726	Open in IMG/M
3300020579\|Ga0210407_10516847	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300021178\|Ga0210408_10654470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	830	Open in IMG/M
3300021418\|Ga0193695_1021343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1361	Open in IMG/M
3300021418\|Ga0193695_1078378	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	716	Open in IMG/M
3300024283\|Ga0247670_1093561	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	553	Open in IMG/M
3300025915\|Ga0207693_10521863	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	927	Open in IMG/M
3300025915\|Ga0207693_11025065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	629	Open in IMG/M
3300025918\|Ga0207662_10064251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2208	Open in IMG/M
3300025926\|Ga0207659_11595100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300026314\|Ga0209268_1053562	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300026325\|Ga0209152_10461284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300026333\|Ga0209158_1201435	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	696	Open in IMG/M
3300026536\|Ga0209058_1017131	All Organisms → cellular organisms → Bacteria	4883	Open in IMG/M
3300026548\|Ga0209161_10144856	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1378	Open in IMG/M
3300026548\|Ga0209161_10246504	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	935	Open in IMG/M
3300026548\|Ga0209161_10447261	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	568	Open in IMG/M
3300026791\|Ga0208072_101607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1113	Open in IMG/M
3300027116\|Ga0207539_104470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300028047\|Ga0209526_10531844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	762	Open in IMG/M
3300028281\|Ga0247689_1067372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300028768\|Ga0307280_10216347	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300028784\|Ga0307282_10327429	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	740	Open in IMG/M
3300028819\|Ga0307296_10427904	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	724	Open in IMG/M
3300030991\|Ga0073994_11662798	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	633	Open in IMG/M
3300031720\|Ga0307469_10134024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1820	Open in IMG/M
3300031720\|Ga0307469_11944177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300031740\|Ga0307468_101909113	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	566	Open in IMG/M
3300031946\|Ga0310910_11088905	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	622	Open in IMG/M
3300032035\|Ga0310911_10120149	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300032180\|Ga0307471_100660505	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300033475\|Ga0310811_11327011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.12%
Host-Associated	Host-Associated	4.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.12%
Plants	Host-Associated → Plants	4.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.11%
Loam	Environmental → Terrestrial → Soil → Loam	13.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.25%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.25%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	13.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.32%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.81%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300019998	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026791	Grasslands soil microbial communities from Kansas, USA that are Nitrogen fertilized - NN591 (SPAdes)	Environmental	Open in IMG/M
3300027116	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-11 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028281	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK30	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_01186970	2124908045	Soil	MELQQMQFSSVTFVLAETILRELRAKVTHHPVARYLGNHAGG
F62_06190920	2170459010	Grass Soil	MQLSSITFVLVEAILRELGAKVTHHTIARYLGDHTGGSDAQTDAV
F14TC_1005203583	3300000559	Soil	MEPQQMQFGSVTFVLVEAILRELSAEVTHHPVTRDLRDYARGSDAQADAI
KanNP_Total_noBrdU_T14TCDRAFT_10189473	3300000596	Soil	VQLGSVTFVLVEAILRELCAKVTHHPVARYLGNHAGGSDA
JGI10216J12902_1072392601	3300000956	Soil	VLAEAILGELRTKVTHDAVARHLRDHAGGSDAQADAITVD
JGI25390J43892_101246711	3300002911	Grasslands Soil	MDRTRAEFMELQQMQFGSVTFVLIEAILRKVSAKVTHHPVARDLCD
Ga0066688_106539111	3300005178	Soil	MQFGAVTFMLAERILRKLPAKVTHHSVARDLGDYAGGSDA
Ga0066688_110125422	3300005178	Soil	MQLGSVTFVLAERILRKLRAKVTHDPVACYLGDHAGGSDA
Ga0066684_102707751	3300005179	Soil	MELQQMQFGSVTFVLIEAILRKVSAKVTHHPVARDLCDYAGS
Ga0066685_107795402	3300005180	Soil	MQFGSVAFVLVKAILRELGAKVTHHSVPRYLGDHARCSDAQTDAVAVNNRS
Ga0066676_102259423	3300005186	Soil	MQFGSVAFVLVKAILRELGAKVTHHSVPRYLGDHARCSDAQTDAVAVNNRSLRKR
Ga0066675_111312131	3300005187	Soil	MDRTRAEFMELQQMQFGSVTFVLIEAILRKVSAKVTHHPVARDLG
Ga0066388_1071209032	3300005332	Tropical Forest Soil	MELQQMQFRSVTFVLIEAILGKLSAKVTHDPVPRYLGDHA
Ga0070659_1013284402	3300005366	Corn Rhizosphere	MESQQVQLGSVTFVLAETILRELCAKVTHHLVARHLRDYAGSSDA*
Ga0070713_1015119711	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDWARAEFMEFQQMQFGSVAFVLVEAILRELGAKVTHHPVARYLGDHA
Ga0066686_107288761	3300005446	Soil	MQFGSVTFMLAERILRKLCAKVTHHPVPHDLGDHAGGSDAQTDAITV
Ga0070707_1017561762	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MELQEMQFGAVTFMLAEIILRKLRAKVTHHSIACDLGDHTGGSD
Ga0070707_1017656021	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MEFQQMQFGSVAFVLVEAILRELGAKVTHHPVARYLGDHA
Ga0070699_1004580371	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MQFGGVALVLVEAIFGKLRAKVTHYPVARDLGDDARGSDA*
Ga0070699_1009882062	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKSGEVQFGAVALVLAEAILGKLRAKVTHHPIARDLGDHARG
Ga0070684_1018301231	3300005535	Corn Rhizosphere	MESEQVQLGSVTFVLAEAILRELTAKVTHHPVARYLGDHAGSSDAKTDAIAINNR
Ga0066695_106231572	3300005553	Soil	MQFGAVTFMLAERILWEPRAKVTHHSIARDLGDHAGGGD
Ga0066661_107978081	3300005554	Soil	MQFGAVAFVLVEAILRELGAKVTHHSVPRYLGDHARCSDAQTDAVA
Ga0066661_108718021	3300005554	Soil	MQFGSVTFVLVEAILRELGAKVTHHSVPRYLGDHARCSDAQTDAVA
Ga0066698_102539571	3300005558	Soil	MQFGSVAFVLVEAILRELGAKVTHHSVPRYLGDHARCSDAQTDAVAVNNRSLRKR
Ga0066699_112698792	3300005561	Soil	MQLGSVTFVLAERILRELSAKVTHHPVPHDLGDHAGGSDAQADAITI
Ga0066693_101659251	3300005566	Soil	VQLSSITFVLAEAILRELTAKVTHHPVARYLGDHAGSSDAQTDA
Ga0066703_100762421	3300005568	Soil	VLVEAILWKLGAKVTHHPIARYLRDHAGGRDAQTDTVSI
Ga0066705_105522862	3300005569	Soil	MQFGSVTFVLIEAILRKVSAKVTHHPVAGDLGDDR
Ga0066903_1035644961	3300005764	Tropical Forest Soil	MDRARAEFMELQKMQFGTVTFMLAEKILRKLRAKVTH*
Ga0066651_106953591	3300006031	Soil	MQFGSVTFVLAETILREPSAKVTHHPVARYLGDHAGSSDAETDAIAVNDGRLRKR
Ga0075417_101158711	3300006049	Populus Rhizosphere	MQLSSVTFVLLEAILRELGAKVTHHPITRYLGDHAGGSDAQT*
Ga0070716_1004092963	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MQFGSVAFVLVEAILRELGAKVTHHPVARYLGDHAG
Ga0066658_107486161	3300006794	Soil	MQFGSVTFVLVEAILRELGAKVTHHSVPRYLGDHARC
Ga0066710_1022150763	3300009012	Grasslands Soil	MELQQMQFSSVAFVLAEAILGELSAKVTHQPVARDLGDDAGGSDA
Ga0066710_1024084981	3300009012	Grasslands Soil	MQFGAVAFVLVEAILRELGAKVTHHSVPRYLGDHARCSDAQTDAV
Ga0066710_1034553431	3300009012	Grasslands Soil	MQLGSVTFVLAERILRELSAKVTHHPVPHDLGDHAGGSDAQTDAIT
Ga0066710_1037107682	3300009012	Grasslands Soil	MQFGAVTFMLAERILWEPRAKVTHHSIARDLGDHAG
Ga0066709_1035331192	3300009137	Grasslands Soil	VLVEAILWKLGAKVTHHPIARYLRDHAGGRDAQTD
Ga0066709_1040434362	3300009137	Grasslands Soil	MELQKMQFGAVTFVLAERILWKLRAKVTHHPVARDLGDHAGGSDAQADAITV
Ga0066709_1042646221	3300009137	Grasslands Soil	MEFQQMQFGAVAFVLVEAILRELGAKVTHHSVPRYLGDHARCSDAQTDAV
Ga0114129_109734023	3300009147	Populus Rhizosphere	MESQQVQLGSVAFVLVEAILRELGAKVTHHPVASYLGDQASGSDAQNDEIHI
Ga0075423_115381621	3300009162	Populus Rhizosphere	MEFQQVQFGSITFMLLEAILREVYAKVTHHPVARYL
Ga0126308_105009623	3300010040	Serpentine Soil	MESQQVQLGSVTFVLAETILRELCAKVTHHSVARYFGD
Ga0126384_111537282	3300010046	Tropical Forest Soil	MESEQVQLGSVTFVLAEAILRELGAKVTHHSVARYLGDHSGSSDAHTDAV
Ga0134086_101754581	3300010323	Grasslands Soil	MESQQVQLGSVTFVLAEAILRELGAKVTHHLVARYLGAH
Ga0134065_100221211	3300010326	Grasslands Soil	MELQQMQFGSVTFVLIEAILWKVSTKVTHHPVARDL
Ga0134111_100668551	3300010329	Grasslands Soil	MEFQQMQFSSVTFVLAEAILGELRTKVTHDAVARDLGNHAGGSDA*
Ga0134080_100323434	3300010333	Grasslands Soil	MEFQQMQFGSVTFMLAERILRKLCAKVTHHPVPHDLGDHAGGSDAQTDAITVDD
Ga0134080_100768553	3300010333	Grasslands Soil	MEFQQMQLGSVAFVLVEAILRELGAKVTHHPVACYLGDHARCSDAQ
Ga0134080_102983192	3300010333	Grasslands Soil	MESQQVQLGSVTFVLAETILRELGAKVTHHLVPRYLGDYAGSSDAQ
Ga0134071_102134711	3300010336	Grasslands Soil	MELQEMQFGAVTFMLAERILRKLPAKVTHHSVARDLGD
Ga0134062_103115242	3300010337	Grasslands Soil	MELQKMQLGSITFVLIEAILRELGAKVTHHPVASYLGDHARCS
Ga0134066_101351102	3300010364	Grasslands Soil	MELQQMQFSSVTFVLGEAILGELSAKVTHQPVARD
Ga0137382_104916041	3300012200	Vadose Zone Soil	MQFGSVTFVLIEAILRKVSAKVTHHPVARDLGDYAGG
Ga0137365_101567954	3300012201	Vadose Zone Soil	MELQQMQFGSVTFVLIEAILRKVSAKVTHHPVARDLGD
Ga0137363_101051271	3300012202	Vadose Zone Soil	MKLQQMQFSSVAFVLAEAILGEFSAKVTHQPVARDLGDDASGSDAQADAIT
Ga0137363_113010452	3300012202	Vadose Zone Soil	MELQQMQFGSITFMLAETILWKLRAKVTHHPVARDLGDHAGGSDAQADAITIDN
Ga0137362_105877341	3300012205	Vadose Zone Soil	MELQQMQFSSVTFVLAEAILGELSAKVTHHPVARDLGDDAGGSDVQAD
Ga0137378_102994894	3300012210	Vadose Zone Soil	MELQQMQFGSVTFVLIEAILRKVSAKVTHHPVARDLGDYA
Ga0137377_103202521	3300012211	Vadose Zone Soil	MELQEMQFGAVTFMLAERILRKLRAKVTHHSIAGDFGDYAGGSDAQANAIT
Ga0137372_100550351	3300012350	Vadose Zone Soil	MKLHQMQFRYVTYMLAERILRKLCTKVTHHPVPHDLGNHAGSSDAQADAITID
Ga0137384_114584812	3300012357	Vadose Zone Soil	MLFGSVTFMLAERILRKLRAKVTHHSIARDFGDYAGGSDAQANAITID
Ga0137385_106453312	3300012359	Vadose Zone Soil	VLAEAILRELTAKVTHHPVARYLGDYAGSSDAQTDAVAVDDGGLWNRE
Ga0137373_102662351	3300012532	Vadose Zone Soil	MESQQVQLGSVTFVLAEAILRELDAKVTHHPVARYLGDHAGSSNAQTDAVA
Ga0137398_110332572	3300012683	Vadose Zone Soil	MKLNEMQFGAVTFMLAERILWKLRAKVTHHSVARDLGDHAGGSDA
Ga0137359_116989662	3300012923	Vadose Zone Soil	MELQQMQFSSVTFVLAEAILGELSAKVTHHPVARDLGDDAGGSDAQADAITVD
Ga0137404_102166313	3300012929	Vadose Zone Soil	MESQQVQLGSVTFVLAETILRELCAKVTHHLVARYLGDYAGSSDAQTNAVAVD
Ga0137407_117385851	3300012930	Vadose Zone Soil	MESQQVQLGSVTFVLAETILRELCAKVTHHSVARYL
Ga0164298_112369552	3300012955	Soil	VEFGAVTFVLAETILGETRAKFTHNPIARDLGDDARGRDGF
Ga0164304_105635041	3300012986	Soil	MKFQEMQFGAVTFMLAERILRKLPAKVTHHSVTRDLGDHAGGSNAQADAI
Ga0164305_120038342	3300012989	Soil	MELHQMQFGSVTFVLAEAILRELTAKVTHHPVARYLG
Ga0157375_105884283	3300013308	Miscanthus Rhizosphere	MESQQVQLGSVTFVLVEAILRKLGTKVTHHPVARYLGDHAGSSNAQTEA
Ga0134075_102050211	3300014154	Grasslands Soil	MELQQMQFSSVAFVLAEAILGELSAKVTHQPVARDL
Ga0134078_106235851	3300014157	Grasslands Soil	MDRARAEFIELQQMQFGSVTFVLTEAILRKVSAKVTHDPVVRYLGDYAGGGNAQA
Ga0137403_105180861	3300015264	Vadose Zone Soil	MESQQVQLGSITFVLAEAILRELTAKVTHHPVARYLCDHAGSSNAQTDAV
Ga0134073_100219794	3300015356	Grasslands Soil	MEFQQMQFGSVTFMLAERILRKLCAKVTHHPVPHDLGDHAGGSDAQ
Ga0134073_101774371	3300015356	Grasslands Soil	MEFQQMQFGSVAFVLVEAILRELGAKVTHHSVPRYLGDHARCSDAQTDAVAVNNRSLRKR
Ga0134072_103951461	3300015357	Grasslands Soil	MELQQMQFSSVAFVLAEAILGELSAKVTHQPVARDLGDDA
Ga0134074_10558581	3300017657	Grasslands Soil	MELNKVQFGAVTFVLAERILRKLRAKVTHHSIARDLGDHAGGS
Ga0134074_11928671	3300017657	Grasslands Soil	MQFGSVTFMLAERILRKLCAKVTHHPVPHDLGDHAGGSD
Ga0066669_103016301	3300018482	Grasslands Soil	MQFGAVTFVLAERILRKLRAKVTHHSVARDLGDHAGGSDAHADAIA
Ga0193723_10982983	3300019879	Soil	MELNEMQFGAVTFMLAERILWKLRAKVTHHSIARNFGDHAC
Ga0193713_10554101	3300019882	Soil	VQLGSVTFVLAKTILRELRAKVTHHLVARYLCDYAG
Ga0193728_13070271	3300019890	Soil	VQLGSVTFVLAEAILRELGAKVTHHPVPRDLGDHASSSNAQTDAVAVD
Ga0193710_10124993	3300019998	Soil	MESQQVQLGSVTFVLAETILRELRAKVTHHLVARYL
Ga0193730_10019291	3300020002	Soil	MQFSSVTFVLGEAILGELSAKVTHQPVARDLGDDAGG
Ga0193735_100048116	3300020006	Soil	MELQQVQLSSVTFVLGEAILGEPGTKVTHHPVARHLGDDA
Ga0193735_10364874	3300020006	Soil	MELNEMQFGAVTFMLAERILWKLRAKVTHHSIARNFGD
Ga0193749_10138061	3300020010	Soil	MQFGSVTFVLAEAILRELGAKVTHHPVARHLGDHAGGSDAQTD
Ga0193721_10794931	3300020018	Soil	MELNEMQFGAVTFMLAERILWKLRAKVTHHSVARDL
Ga0193726_12464733	3300020021	Soil	MQFGSVAFVLVEAILRELGAKVTHHPVARYLGDHAGGCNAQTDA
Ga0210407_105168473	3300020579	Soil	MQFGSVAFVLVEAILRELGAKVTHHSVARYLGDHARCSDAQTDA
Ga0210408_106544701	3300021178	Soil	MQFGSVAFVLVEAIMRELGAKVTHHPVARYLGDHARCSDAQTDAVAVNNRSLR
Ga0193695_10213431	3300021418	Soil	MELQQMQFGSITFMLAETILWKLRAKVTHHPVARHLGDDAGGSDT
Ga0193695_10783782	3300021418	Soil	MDRTRAEFIELQQMQFGSVTFVLIEAILRKVSAKVTHHPVARDLGDYAGGGNAQ
Ga0247670_10935611	3300024283	Soil	MEFQQMQFGSVTFMLTERILRKLRAKVTHHPVARD
Ga0207693_105218631	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MESEQVQLGSVTFVLAEAILRELGAKVTHHPVARYLGDHAGSSNAQTDAVAINN
Ga0207693_110250652	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VQLGSVTFMLVEAILRELDTKVTHHPVARYLGDHAGSSNA
Ga0207662_100642511	3300025918	Switchgrass Rhizosphere	MQFGAVTFMLAERILRKLPAKVTHHSVARDLGDYAGGSDAHADAITIDD
Ga0207659_115951002	3300025926	Miscanthus Rhizosphere	MEFQEVQFGSVTFMLAEAILWELSAKVTHDPVARHLGDHAGGSDAQANA
Ga0209268_10535623	3300026314	Soil	MKLQQMQFSSVTFVLGEAILGELSAKVTHHPIARDLGDDAGGSD
Ga0209152_104612842	3300026325	Soil	MQFGSVTFVLTEAILRKVSAKVTHHPVARDLGDYAGGGN
Ga0209158_12014352	3300026333	Soil	MQFGSVTFVLVEAILRELGAKVTHHSVPRYLGDHARCSDAQT
Ga0209058_10171311	3300026536	Soil	MQFSSVAFVLAEAILGELSAKVTHQPVARDLGDDAGGSDAQADAI
Ga0209161_101448561	3300026548	Soil	MEFQQMQFSSVTFVLTERILWKLHAKVTHHPVACDLGDYAGGSDA
Ga0209161_102465043	3300026548	Soil	MQFSSVTFVLAERILRELRAEVTHHSVPCDLGDNAGGSDAQAEAIAVDD
Ga0209161_104472612	3300026548	Soil	VQLGSVTFVLAETILRELGAKVTHHLVPRYLGDYAGSSDAQTNA
Ga0208072_1016073	3300026791	Soil	MKLEQMQFSSVTFVLIKTILWELSAKVTHDPVTRNLGDHAGGSDAH
Ga0207539_1044701	3300027116	Soil	MESEQVQLGSVTFVLAETILRELCAKVTHHLVARHLRDYAGSSDA
Ga0209526_105318441	3300028047	Forest Soil	MQFGSVAFVLVEAILRELGAKVTHHPIARYLGDHARCSDAQTDAVAVNNRGL
Ga0247689_10673721	3300028281	Soil	MQFGSVTFMLTERILRKLRAKVTHHPVARDLGDHAGGSDAQADAI
Ga0307280_102163472	3300028768	Soil	VQFGSVTFVLVEAILGELSAEVTHHLVTRDLRNHARGRDAQADAITV
Ga0307282_103274291	3300028784	Soil	MESQQVQLGSVTFVLAETILRELCAKVTHHLVARHLRDYAGSSDA
Ga0307296_104279041	3300028819	Soil	MEFQEVQFGSVTFVLAEAILWELSAKVTHDPVARYLGDHAGGSDAQADAITV
Ga0073994_116627981	3300030991	Soil	MQFGSVAFVLVEAILRELGAKVTHHPIARYFGDHARCSDAQTDAVADLSNRWHNR
Ga0307469_101340241	3300031720	Hardwood Forest Soil	MELQEVQFGAVTFMLAERILGKLRAKVTHHSIARN
Ga0307469_119441771	3300031720	Hardwood Forest Soil	MESQQVQLGSVTFVLAEAILRELRAKVTHHPVARYLGDHAGS
Ga0307468_1019091131	3300031740	Hardwood Forest Soil	MESQQVQLGSVTFVLAEAILRELGAKVTHHPVARYLGDHAGGSDAQAD
Ga0310910_110889052	3300031946	Soil	MQFSSVTFVLAEAILGELSTKVTHHPVARHLGDDAGGSDAQANAITVDD
Ga0310911_101201493	3300032035	Soil	MELQEMQFGAVTFMLAERILRKLRAKVTHHSVARDLGDHARGSD
Ga0307471_1006605053	3300032180	Hardwood Forest Soil	MQFSSVSFVLAEAILGELNAKVTHHPVARDLGDDAGG
Ga0310811_113270112	3300033475	Soil	MESQQVQLGSVTFVLAETILRELCAKVTHHLVARHLRD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070493

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences