3300026915: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN106 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026915
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0055414 | Ga0208838
• Sample Name: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN106 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10928158
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Browns Valley, California, USA
• Coordinates
  • Lat. (^o): 39.23550963
  • Long. (^o): -121.2836963
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036627	Metagenome	169	Y
F041998	Metagenome / Metatranscriptome	159	Y
F059436	Metagenome / Metatranscriptome	134	N
F081180	Metagenome / Metatranscriptome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208838_100146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	973
Ga0208838_100276	All Organisms → cellular organisms → Bacteria	788
Ga0208838_100362	Not Available	728
Ga0208838_100463	Not Available	671

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208838_100146	Ga0208838_1001461	F081180	MNRAETEDGSYASARNRKLLAEWAAKAGENEYAEPALNPCQTTAYA
Ga0208838_100276	Ga0208838_1002762	F041998	MGDKQHVLELLDKGLPPLWVGPAEQLLGFLPRQREAVQGRADRLAAAPQPEALAHPADQAAQRPAWRWLRPNYGRRRGRALGGADHLAEFGCAVWAKKGRRPPVRRNASASGP
Ga0208838_100362	Ga0208838_1003622	F059436	MNRSAEDGEWSSPHSGGEGTGVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEAVPGVGSGRGTQERGQSKRPRIAAGRAATPVGPKRSTGGGRPRAVWQRRRATSG
Ga0208838_100463	Ga0208838_1004632	F036627	MKVKRGTEIIETSNQNIQMQVIESIKINPNSLKLDHRKLR