3300026765: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-11 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026765
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072052 | Ga0207590
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-11 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12040499
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018801	Metagenome / Metatranscriptome	233	Y
F020078	Metagenome / Metatranscriptome	226	Y
F020986	Metagenome / Metatranscriptome	221	Y
F021340	Metagenome	219	Y
F041834	Metagenome	159	Y
F057508	Metagenome	136	Y
F064778	Metagenome / Metatranscriptome	128	Y
F072495	Metagenome	121	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207590_100530	All Organisms → cellular organisms → Bacteria	731
Ga0207590_100641	All Organisms → cellular organisms → Archaea	697
Ga0207590_101342	Not Available	568
Ga0207590_101358	Not Available	567
Ga0207590_101470	Not Available	555
Ga0207590_101931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	514
Ga0207590_101981	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207590_100530	Ga0207590_1005301	F021340	KRHSKLQTFQAHRTIARANVARSQFWHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLRDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWG
Ga0207590_100641	Ga0207590_1006412	F041834	YSTLNKDTIVGEVLNNFSYPIELVRITATVYDKNGIIVATGDKYVNDYLIKPGNRSGFDIFLDETLPSKSKYALTTSFEKSEDDKPEALQLSVGKNSKSSNTFRVLGEVMNQGKNDANAVKVSAIFYDEKHKVTYTDYVFTNPDIISPNKKAPFEFSFYVDNPEKIKSMAFNVQSDEYSLITDNGQNNTISQQ
Ga0207590_101342	Ga0207590_1013422	F072495	SGTKRTAPAFRGKMLANEVERLKPPQYVAFRTMERWVVIPVIARIESREGGRLYGYWFSRFTPEGAFREVPVDYVVDLGSDDDAEKLVDLIRGGRELPVEFVQRLHVID
Ga0207590_101347	Ga0207590_1013472	F057508	KQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKADMPFCAAHVCF
Ga0207590_101358	Ga0207590_1013581	F020078	MHSATRFCWQSGVIALATIIFAFLVPGIALCKVVSLTSIASAIAITTLVAGFGLYLAGQLIEKRTPQSERVDHYLQASILVTAAGLLWGHVVLQTGPWRDRSIEPGVAFAIVAGCGVAGALLLIRRARR
Ga0207590_101470	Ga0207590_1014702	F064778	MEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITN
Ga0207590_101931	Ga0207590_1019312	F018801	FIALGVFLKPYALENSRCIGFAGLGPYCFEQASSMPEVIKYGSVAVGFAFLYGGRLQIKRRRNGR
Ga0207590_101981	Ga0207590_1019811	F020986	MKTRAIATELDRAFAAARVKGRMGGVVLCDTIAPLYAIHKALKATHASGELTDQQYTEKGRELLEILGNAVVSLLIQQ