NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F057508

Metagenome Family F057508

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F057508
Family Type Metagenome
Number of Sequences 136
Average Sequence Length 48 residues
Representative Sequence MSAIGPKQTWRVALHMSAFEGKADMTICGMSAFAVAIGGKADMPFCT
Number of Associated Samples 97
Number of Associated Scaffolds 136

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.74 %
% of genes from short scaffolds (< 2000 bps) 0.74 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.529 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(26.471 % of family members)
Environment Ontology (ENVO) Unclassified
(30.882 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.206 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 136 Family Scaffolds
PF04392ABC_sub_bind 31.62
PF13493DUF4118 5.15
PF04226Transgly_assoc 4.41
PF00561Abhydrolase_1 2.94
PF00211Guanylate_cyc 2.94
PF07536HWE_HK 2.94
PF12860PAS_7 2.21
PF13505OMP_b-brl 1.47
PF13185GAF_2 1.47
PF13577SnoaL_4 1.47
PF13649Methyltransf_25 1.47
PF132794HBT_2 1.47
PF01322Cytochrom_C_2 1.47
PF01590GAF 0.74
PF07885Ion_trans_2 0.74
PF02272DHHA1 0.74
PF03713DUF305 0.74
PF12849PBP_like_2 0.74
PF17158MASE4 0.74
PF00484Pro_CA 0.74
PF00753Lactamase_B 0.74
PF02518HATPase_c 0.74
PF12850Metallophos_2 0.74
PF07883Cupin_2 0.74
PF13676TIR_2 0.74
PF12697Abhydrolase_6 0.74
PF07813LTXXQ 0.74
PF09948DUF2182 0.74
PF07969Amidohydro_3 0.74
PF07045DUF1330 0.74
PF00135COesterase 0.74
PF01575MaoC_dehydratas 0.74
PF00174Oxidored_molyb 0.74
PF07681DoxX 0.74
PF02077SURF4 0.74
PF03480DctP 0.74
PF01042Ribonuc_L-PSP 0.74
PF06742DUF1214 0.74
PF05023Phytochelatin 0.74
PF02423OCD_Mu_crystall 0.74
PF06411HdeA 0.74
PF12071DUF3551 0.74
PF00072Response_reg 0.74
PF10098DUF2336 0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 136 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 31.62
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 4.41
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 2.94
COG4251Bacteriophytochrome (light-regulated signal transduction histidine kinase)Signal transduction mechanisms [T] 2.94
COG3678Periplasmic chaperone Spy, Spy/CpxP familyPosttranslational modification, protein turnover, chaperones [O] 2.94
COG3920Two-component sensor histidine kinase, HisKA and HATPase domainsSignal transduction mechanisms [T] 2.94
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 1.47
COG3909Cytochrome c556Energy production and conversion [C] 1.47
COG3544Uncharacterized conserved protein, DUF305 familyFunction unknown [S] 0.74
COG5470Uncharacterized conserved protein, DUF1330 familyFunction unknown [S] 0.74
COG5402Uncharacterized protein, contains DUF1214 domainFunction unknown [S] 0.74
COG5361Uncharacterized conserved proteinMobilome: prophages, transposons [X] 0.74
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.74
COG3915Uncharacterized conserved proteinFunction unknown [S] 0.74
COG0251Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 familyDefense mechanisms [V] 0.74
COG2423Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin familyAmino acid transport and metabolism [E] 0.74
COG2272Carboxylesterase type BLipid transport and metabolism [I] 0.74
COG2041Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductasesEnergy production and conversion [C] 0.74
COG0288Carbonic anhydraseInorganic ion transport and metabolism [P] 0.74


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.53 %
All OrganismsrootAll Organisms1.47 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300009162|Ga0075423_10392933All Organisms → cellular organisms → Bacteria1455Open in IMG/M
3300025901|Ga0207688_10015257All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4170Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere26.47%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil15.44%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil12.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil5.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.68%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.68%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere2.94%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.21%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.21%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.21%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere2.21%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.21%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.21%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.47%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.47%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.47%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.74%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.74%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.74%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.74%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.74%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.74%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.74%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090015Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300004009Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006194Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300012491Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610Host-AssociatedOpen in IMG/M
3300012500Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610Host-AssociatedOpen in IMG/M
3300012513Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510Host-AssociatedOpen in IMG/M
3300012882Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2EnvironmentalOpen in IMG/M
3300012904Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012910Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300022737Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5EnvironmentalOpen in IMG/M
3300023260Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6EnvironmentalOpen in IMG/M
3300023266Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4EnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026765Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-11 (SPAdes)EnvironmentalOpen in IMG/M
3300026792Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPICI_034229502088090015SoilINSGMSAIGPKQTSVIAPHMSAFGGKADMTVCGKSAFAVAIGGKADVPFCTAYVRF
JGI11643J12802_1005024913300000890SoilGPKRTSLVAPHMSAFGGKADMTICGMSAFAVAIGGKADIALCTAYVRL*
JGI11643J12802_1006641433300000890SoilMSAFGPKRTSLFAPHMSAFGGKADMTVCGMSAFAVAIRGKADIAYCTAYVRF*
JGI11643J12802_1143046523300000890SoilMSAIGPKQTWPRALHMSAFGAKADMTVCGMSAFAVAIGGKADMPFCAAHVR*
JGI1027J12803_10053191023300000955SoilMSAFGPKQTWALALHMSAFGGKADMAVCGKYAFAVAIGGKADMPFCT
F14TB_10193834313300001431SoilMSARGPKQTWASAAHMSAFGGKADLGQMSAFAVAIGGKADIL*
Ga0055437_1031794813300004009Natural And Restored WetlandsTKRTCPTALHMSAFGGKADMSLCGKSAFAVAVGGKADMAVCTAYVDIEARRRAQ*
Ga0062589_10053954013300004156SoilMSAIGPEQTWVSALHRSALGGKADMAICGMSAFAVAIRGKADVAFCDACSSLAQGPL
Ga0062589_10106012523300004156SoilAFGPKQTSASALHMSAFGGKADITVCGMSAFAVAIGCKADMPHCTAHVRF*
Ga0063356_10039940613300004463Arabidopsis Thaliana RhizosphereVIMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFG
Ga0062594_10331653313300005093SoilMSLPTRPSPMSGFGPKPTCASALHMSAFGGKADVMVCRSPLFAVAVGSKADMGWCIANVC
Ga0065705_1014409253300005294Switchgrass RhizosphereSRGCDSGMSAFGPERTSLVAPHMSALGGKADMTISMSAFAVAIGGKADMPFCTAYVRL*
Ga0065705_1045314723300005294Switchgrass RhizosphereMSAIGPKRTYLVVPHMSAFGGKADMTIRDVSAFAVAIGGKADMACCSAYVCF*
Ga0065707_1049485713300005295Switchgrass RhizosphereMSAIGPKRTQVSAPHMSAFGSKADMTLCGNAFAVAIGGKADMPF
Ga0065707_1079465623300005295Switchgrass RhizosphereAADEVIGIAILFAALRESAYGPKRTSQVAPHMSAFGGKADMTVCGRSAFAVAIGGKADMGLCAAYVRF*
Ga0066388_10010035133300005332Tropical Forest SoilMSAIGPKQTWPTALHMSAFGGKADIAFLRNFAFAVAIGVIADMTFCTAHVCF*
Ga0066388_10144675213300005332Tropical Forest SoilMSAIGPKRTSLDALHMSAFGGKADMTESAFAVAIGGKADMTLCAAYVRF*
Ga0066388_10204543123300005332Tropical Forest SoilMSAIGPKQTSRSALHMSAFGGKADMTGYESAFAVAIGGKADM
Ga0066388_10205439513300005332Tropical Forest SoilMSAIGPKRTWASALHMSAFGGKADMTFAEVAFAVAIGGKADIAFCGAHV
Ga0066388_10477499723300005332Tropical Forest SoilMSAIGPKQTWRIAPHMFTFGGKADMTPLRESAFAVAFGGKADMGLCPAHVCF*
Ga0066388_10501914213300005332Tropical Forest SoilMSAIGPKRTSPDALHMSAFGVKADMAFREFAFAVAIGGKA
Ga0066388_10716172813300005332Tropical Forest SoilMSAIGPKQTWPAAPHMSAFGGKADMTFFGNYAFAVAIGGKADMGCCIA
Ga0066388_10762353723300005332Tropical Forest SoilMSAIGPKQTWASALHMSAFGGKADMTICGMSAFLVAIGSKADMPFCAAYVCF*
Ga0066388_10823016013300005332Tropical Forest SoilMSAIGPKRTLAFALHMSAFGGKADMTICGMSAFLVAIGSKADMPYCAAYVCF*
Ga0066388_10878769313300005332Tropical Forest SoilMAMSAIGPKRTSIAALRMSAFGSKADMTICGMSAFAVAIGGKADMGLCAAHVRL*
Ga0070677_1000972043300005333Miscanthus RhizosphereMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGK
Ga0068869_10026838233300005334Miscanthus RhizosphereMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHVCF*
Ga0070660_10138903123300005339Corn RhizosphereMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGK
Ga0070668_10000211793300005347Switchgrass RhizosphereMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHVCF*
Ga0070674_10027909713300005356Miscanthus RhizosphereGPKQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKADIRCCTAHVCF*
Ga0070705_10027118323300005440Corn, Switchgrass And Miscanthus RhizosphereMSAFGPKQTSFVATHMSAFSGKADMTPLRECVFAVAIGGKADMAVCTAHVGF*
Ga0070694_10025501313300005444Corn, Switchgrass And Miscanthus RhizosphereMSAIGPKQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKADI
Ga0070708_10015743823300005445Corn, Switchgrass And Miscanthus RhizosphereMSAFGPKQTCPVALHMSAFGGKADMGYCGKSAFAVAIGGKADVPFCTAYVR*
Ga0070663_10081028633300005455Corn RhizosphereMSAIGPKQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKAD
Ga0070695_10114356813300005545Corn, Switchgrass And Miscanthus RhizosphereMSAIGPKRTSIVAPHMSAFGGKADNDLVRKSAFAVAIGGKADIAFCGAN
Ga0070664_10041133913300005564Corn RhizosphereAIGPKRTSVVAPHMSAFGGKADMTIYGMSAFAVAIGSKADMPSCTAHVRL*
Ga0068856_10062381333300005614Corn RhizosphereMSAIGPLRTFPFAPHMSAFGGKADNDLVRKSAFAVAIGGKADIAFCGANVR*
Ga0066905_10001603213300005713Tropical Forest SoilQTSASAAHMSAFGGKADMTVQESAFAVAIGGKADIR*
Ga0066905_10018709223300005713Tropical Forest SoilMSAYGPKQTWLAALHMLLLGGKADMTLYRKSAFAVAIGGKADMPYCGAYVRL*
Ga0066905_10026803613300005713Tropical Forest SoilMNGRMSAFGPKQTCSFAMHMSAFGGKADMTICMSAFAVAIGGKADMPVCAAYVCL*
Ga0066903_10177904923300005764Tropical Forest SoilMLFAAVHESAFGPKRKSQIALHMSAFRGKADMAVCVRSAFAVAIGGKADMGWCTAYVCF*
Ga0066903_10522839613300005764Tropical Forest SoilMSAFGPKQTCASALHMSAFGGKADMTLCGKFAFAVAIGGKADMPFCNAYVCF*
Ga0066903_10588310113300005764Tropical Forest SoilMSAIGPKQTLLFAPHMSAFGGKADMIRLRESAFAVAIGGKADITVCTAHVCF*
Ga0066903_10667164823300005764Tropical Forest SoilMSAIGPKRTSVVALQESAFGGKADMTIGGMSAFAVAIGGKADMAFCTAHVRF*
Ga0068851_1042409413300005834Corn RhizosphereMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHV
Ga0068858_10126486523300005842Switchgrass RhizosphereAFGPKRTSVVAPHMSAFGGKADMTIYGMSAFAVAIGSKADMPSCTAHVRL*
Ga0068860_10022517813300005843Switchgrass RhizosphereMSAFGPKRTYRVALPMSAFGGKADMPICAMSAFAAAIEGKADTPFCAAHVGL*
Ga0081455_1047626023300005937Tabebuia Heterophylla RhizosphereMSAFGPKQTLVCALRMAFGGKADMTIALPMSAFDPE
Ga0075417_1034920123300006049Populus RhizosphereMSAYGPKQTRAVALQMSAFGGKADMARESAFVVAIGCKADIACCGAYVRF*
Ga0075417_1043649123300006049Populus RhizosphereMSAIGPKRTSTSAPHMSAFGGKADMTFCENSAFAVAIG
Ga0075432_1010913223300006058Populus RhizosphereMSAYGPKRTSVAALHMSAFRGKADMTRLRESAFAVAIGGKADVPFCTAY
Ga0075432_1017453323300006058Populus RhizosphereMSAIGPKRTSPVAPHMSAFGGKADMTVCGKSAFAVA
Ga0075427_1000585413300006194Populus RhizosphereMSAIGPKRTSVAAPHMSAFGGKADMTVCGKSAFAVAIGGKADMP
Ga0075428_10036642013300006844Populus RhizosphereMSAFGPKRISLTAPHMSAFGGKADITVCGMSAFAVAIRGKADITVCGAYVCF*
Ga0075428_10066611423300006844Populus RhizosphereMSAYGPKRTSLAAPHMSAFRGKADMTRLRESAFAVAIGDKADVPFCTAYVR*
Ga0075421_10066043613300006845Populus RhizosphereMSAIGPKRTSVVAPHMSAFGGKADMTICGMSAFAVAIRGKADMTYCGANVRF*
Ga0075430_10088882313300006846Populus RhizosphereMSAFGPKRISLTAPHMSAFGGKADITVCGMSAFAVAIRGKADITVCGAYVCF
Ga0075431_10024595623300006847Populus RhizosphereMSAFGPKRISLTAPHMSAFGGTADITVCGMSAFAVAIRGKADITVCGAYVCF*
Ga0075433_1001597233300006852Populus RhizosphereMSAYGPKRTSVAALHMSAFRGKADMTRLRESAFAVAIGGKADVPFCTAYVR*
Ga0075420_10021419533300006853Populus RhizosphereMSAIGPKRTSVAAPHMSAFGGKADMTVCGKSAFAVAIGGKAD
Ga0075425_10002107913300006854Populus RhizosphereMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVA
Ga0075425_10021863723300006854Populus RhizosphereMSAYGPKQTWAVALHMSAFGGKADMTFLRMSAFAVAIGDKADMTCCAAYVCF*
Ga0075425_10044820013300006854Populus RhizosphereMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFG
Ga0075425_10077394023300006854Populus RhizosphereMSAFGPKQTWALALHMSAFGGQSGHDPELMSAFAVAIGGKADIACCGAHVRF*
Ga0075425_10241718523300006854Populus RhizosphereFFAAVHESAIGPKQTWTLALHMSAFGGKADIDRLRESAFAVAIGCKADVTCCAAYFRF*
Ga0075434_100000504353300006871Populus RhizosphereMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADM
Ga0075434_10024173923300006871Populus RhizosphereMSAIGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADM
Ga0075429_10028287313300006880Populus RhizosphereSGPKRTSVVAPHMSAFGGKADMTICGMSAFAVAIRGKADMTYCGANVRF*
Ga0075429_10033207713300006880Populus RhizosphereMSAIGPKRTSVVAPDTSAFGGNADMTVLRESAFAVAIRGKVDMPFCTA
Ga0075429_10036651913300006880Populus RhizosphereMSAFGPKRTSLVAPHMSAFGGKADMTVCRKSAFAVAIGGKADMACCSAYVGF*
Ga0075429_10103502623300006880Populus RhizosphereHLSTRIRHLMSAYGPKQTRAVALQMSAFGGKADMARESAFVVAIGCKADIACCGAYVRF*
Ga0068865_10157255923300006881Miscanthus RhizosphereMSAIGPKQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKADM
Ga0075424_10034007733300006904Populus RhizosphereMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGG
Ga0075419_1006013613300006969Populus RhizosphereMSAIGPKRTSTSAPHMSAFGGKADMTFCENSAFAVAIGSKADMGWCIAHVC
Ga0075435_10099390913300007076Populus RhizosphereMSAIGPKRTWACALQMSAFGSKADMTVCGKSAFAVAIGGKAD
Ga0111539_1028346633300009094Populus RhizosphereMSAIGPKQTWMNAPHMSAFGGKADMTICGMSAFAV
Ga0111539_1056450713300009094Populus RhizosphereMSAFGPKRTSVAALHMSAFRGKADMTRLRESAFAVAIGGKADVP
Ga0075418_1140825913300009100Populus RhizosphereMSAIGPKRTSVAAPHMSAFGGKADMTVCGKSAFAVA
Ga0114129_1104561913300009147Populus RhizosphereMGYSSPPIGAAISAIGPKRTSLVAAHMSAFGGKADMTICGVSAFAVAIGGKADMPFCTAHVRF*
Ga0111538_1025904513300009156Populus RhizosphereMSAIGPKQTWMNAPHMSAFGGKADMTICGMSAFAVA
Ga0075423_1039293333300009162Populus RhizosphereAPMSAYGPKRTSVAALHMSAFRGKADMTRLRESAFAVAIGGKADVPFCTAYVR*
Ga0126378_1214205613300010361Tropical Forest SoilMNLVPSLMSAIGPKQTWAVAAHTSAFGGKADMTIGTCPPFAVAIGGKADMTFCT
Ga0134121_1079162123300010401Terrestrial SoilYHRVPSLTAPHMSAFRGKADMTILRESAFAVAIGGKADMPFCTAYVR*
Ga0157329_100362113300012491Arabidopsis RhizosphereMSAIGPKQTWRVALHMSAFEGKADMTICGMSAFAVAI
Ga0157314_103391923300012500Arabidopsis RhizosphereVTPFFALHESAIGPEQTWVSALHRSALGGKADMAICGMSAFAVAIRGKAD
Ga0157326_104335213300012513Arabidopsis RhizosphereMHHFVMSAIGPKQTSASALHMSAFGGKADMTQGLMFAFAVAIGGKADMPFCTAYVG*
Ga0157304_100103113300012882SoilVIMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVA
Ga0157282_10000097123300012904SoilVIMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAF
Ga0157295_1000565923300012906SoilMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAIGCKADIACCGAYVRF*
Ga0157308_1001300933300012910SoilMSASGPKQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKADI
Ga0157308_1007213613300012910SoilIMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHVCF*
Ga0157301_1001111823300012911SoilMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKASS*
Ga0157297_1000201543300012914SoilVIMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADM
Ga0126375_1050895123300012948Tropical Forest SoilYFIAAVHESAFGPKQTSAIAAHMSAFGCKADMTICGMSAFAVAIGGKADMPLRAAHVCL*
Ga0164300_1002340413300012951SoilVIMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCT
Ga0164298_1037257923300012955SoilAFGPKRTFLAALHMSAFEGKPHMTIGMYALAVAIGGKADMPFCTAYVR*
Ga0164303_1001819023300012957SoilMSAIGPKQTSQVALHMSAIGCKADMTICGMSAFAVAIGGKADMGLCTAYVRL*
Ga0164303_1003047413300012957SoilMMSAFGPKQTLAVALHESAFGGKADMTICGMSACAVAFGGKADMPFCTAHVCF*
Ga0164303_1063211113300012957SoilALGPLRTFPFAPHMSAFGGKADNDLVRKSAFAVAIAGKADIAFCGANVR*
Ga0164304_1085179413300012986SoilMSAYGPEQTWVSALHRSALGGKADMAICGMSAFAVAIRGKADVAFCDA
Ga0164307_1031610623300012987SoilMMMLFAAVHLSAYGPKPTSLVAPHISAFRGKADMTICSMSAFAVAIGGKADMPFCTAHVCF*
Ga0173483_1053374633300015077SoilMSAIGPKQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKA
Ga0173480_1010524813300015200SoilMSAIGPKQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKADMT
Ga0132258_1200393823300015371Arabidopsis RhizosphereALPAPRELSADALHTSAFGGKADMIICGMSAFAVAIGSKADIACCTAYVR*
Ga0132258_1216222323300015371Arabidopsis RhizosphereMSAIGPEQTWMNALHMSAFRGKAEHDFCGMSAFAVAIGGKADMGWCAAHVCF*
Ga0132257_10088697323300015373Arabidopsis RhizosphereMSAIGPEQTWVSALHRSALGGKADMAICGMSAFAVAIRGK
Ga0132255_10089944123300015374Arabidopsis RhizosphereMSAFGPKQTSLAALHMSAFGGKADITVCGMSAFSVAIGGKAD
Ga0173481_1000016413300019356SoilMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAH
Ga0173481_1003256033300019356SoilMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAF
Ga0173481_1024154833300019356SoilMSAIGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKAD
Ga0173482_1000035613300019361SoilMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAV
Ga0173482_1000823953300019361SoilGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHVCF
Ga0247747_100003913300022737SoilMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHVCF
Ga0247798_100289433300023260SoilVIMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTANVRVWSKAD
Ga0247789_1000156153300023266SoilMMSAFGPKRTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHVCF
Ga0207656_1032867713300025321Corn RhizosphereMMSAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHVRF
Ga0207682_1013583713300025893Miscanthus RhizosphereMSAFGPKQTWMNAPHMSAFGGKADMTICGMSAFAVA
Ga0207688_1001525713300025901Corn, Switchgrass And Miscanthus RhizosphereMMMLFAAVHLSAYGPKPTSLVAPHISAFRGKADMTICSMSAFAVAIGGKADMPFCTAHVC
Ga0207693_1130224023300025915Corn, Switchgrass And Miscanthus RhizosphereMSAFGPERTSLVAPHMSALGGKADMTISMSAFAVAIGGKADMPFC
Ga0207658_1043310923300025986Switchgrass RhizosphereMSAIGPLRTFPFAPHMSAFGGKADNDLVRKSAFAVAIGGKADIAFCGANVR
Ga0207641_1057557613300026088Switchgrass RhizosphereAFGPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHVCF
Ga0207590_10134723300026765SoilKQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKADMPFCAAHVCF
Ga0207499_10024813300026792SoilPKQTLAVALHESAFGGKADMTICGMSAFAVAFGGKADMPFCTAHVCF
Ga0209814_1001445023300027873Populus RhizosphereMSAYGPKRTSLAAPHMSAFRGKADMTRLRESAFAVAIGDKADVPFCTAYVR
Ga0209814_1017534823300027873Populus RhizosphereMSAIGPKRTSVAAPHMSAFGGKADMTVCGKSAFAVAIGG
Ga0207428_1007476023300027907Populus RhizosphereMSAYGPKRTSVAALHMSAFRGKADMTRLRESAFAVAIGGKADVPFCTAYVR
Ga0209382_1036559433300027909Populus RhizosphereTMSAIGPKRTSLVAPHMSAFGGKADMTVCRKSAFAVAIGGKADMACCSAYVGF
Ga0310887_1000363013300031547SoilMSAIGPKQTWRVALHMSAFEGKADMTICGMSAFAVAIGCK
Ga0310900_1045200413300031908SoilMHHFVMSAIGPKQTSASALHMSAFGGKADMTQGLMFAFAVAIGGKADMPFCTAYVG
Ga0310885_1008235723300031943SoilPKQTWRVALHMSAFEGKADMTICGMSAFAVAIGCKADVPFCTAYVCL
Ga0310903_1014491313300032000SoilMSAIGPKQTWRVALHMSAFEGKADMTICGMSAFAVAIGCKA
Ga0310897_1049931013300032003SoilMSAYGPKQTWAVALHMSAFGGKADMTFLRMSAFAVAIGDKADMTCCAAYVC
Ga0310902_1058828313300032012SoilMSAYGPEQTWVSALHRSALGGKADMAICGMSAFAVAIRGKADVAFCDACSSLAQGP
Ga0310899_1000528313300032017SoilMSAIGPKQTWRVALHMSAFEGKADMTICGMSAFAVAIGGKADMPFCT
Ga0310895_1035677023300032122SoilMSEPMSAFGPKQTWRVALHMSAFEGKADMTICGMSAFAVAIGCKADVPFCTAYVGF
Ga0307472_10070948613300032205Hardwood Forest SoilMSAIGPKQTSRFAPHMSAVGGKADVAICGMSAFAVAIRGKADIAFCG


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