3300026756: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K2-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026756
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091551 | Ga0207577
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K2-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23090149
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004309	Metagenome / Metatranscriptome	444	Y
F006812	Metagenome / Metatranscriptome	364	Y
F009364	Metagenome / Metatranscriptome	319	Y
F017166	Metagenome / Metatranscriptome	242	Y
F022740	Metagenome / Metatranscriptome	213	Y
F025120	Metagenome / Metatranscriptome	203	Y
F025757	Metagenome	200	N
F031960	Metagenome / Metatranscriptome	181	Y
F038225	Metagenome / Metatranscriptome	166	Y
F045966	Metagenome / Metatranscriptome	152	Y
F064703	Metagenome / Metatranscriptome	128	Y
F069143	Metagenome / Metatranscriptome	124	Y
F087728	Metagenome	110	N
F088400	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207577_100352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	964
Ga0207577_100642	Not Available	832
Ga0207577_100858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	776
Ga0207577_100916	All Organisms → cellular organisms → Bacteria	767
Ga0207577_101174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	732
Ga0207577_101217	All Organisms → cellular organisms → Bacteria → Proteobacteria	725
Ga0207577_101239	Not Available	723
Ga0207577_101744	Not Available	659
Ga0207577_102728	Not Available	586
Ga0207577_102789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582
Ga0207577_103262	Not Available	559
Ga0207577_103445	Not Available	549
Ga0207577_103580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207577_100352	Ga0207577_1003521	F087728	VAMIERAPEATSWFGRIGYALTRSTDLVRVEFLHVLGVCAALVLIYALLGPLLAVLLTGFADNGSLAASVIANGVLGPFFFLGLSMLYFEQRARELSSPPKPKT
Ga0207577_100642	Ga0207577_1006421	F064703	MRKSLTVLIVALLGVFAVKSIIGPGKMNLGESVKYPVPTYDLHVAQPVDMKNFPSDVIP
Ga0207577_100858	Ga0207577_1008581	F009364	VLDRPERLERVELALVVLAGCGAASDQTQEQTLTPAQVRQTFKQVTGRPLEPAAVSDPAWDQLGFGLDMPQSLVDRYGIFNVYVGKPGKTASLASFFKDKDTEKPLARSSDGVYWELDSQSKTWVAYKRYSGNVVLVWLSGSKEQAADERFDRLDSILSGLPG
Ga0207577_100916	Ga0207577_1009162	F038225	MKRLSLALLGAVGAFFVLTPAQAADYRVIQYNDTKICQVVDMAGPFKPISSNYTVLTKKSIPTFDAAMKARAEVGAKAKCIL
Ga0207577_101174	Ga0207577_1011742	F045966	DIMSQAAPMAIERTYNNRYIFSNRVNPQSLVYQGIYQDFDWASIALK
Ga0207577_101217	Ga0207577_1012173	F031960	QTLIADPDAPDADSFKNKDYEFYALKTFITLTRKSHGVVVKTYNACWVE
Ga0207577_101239	Ga0207577_1012391	F006812	MYVLLIILLVVLPFGTAIVCGALMQWAGNTISGWSSIGGLALGIYFFHKCMEVLAAA
Ga0207577_101744	Ga0207577_1017442	F025757	LALSATRAPMSYSASLSLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQLGDTQPRQEA
Ga0207577_102224	Ga0207577_1022242	F088400	MRTLSSLLGRKIVTESGSDLGRCHDVRAELGASRLRITGLVLGSRGHLEHFGIGAQASASSARVRDSDLIPWKDIVGFEADRILVRDSAVGE
Ga0207577_102728	Ga0207577_1027282	F004309	MAYSIVRVDEIEGSGPGGAVHFVRRELGVGAFGINWFELPPDTEGFEHDESETQQEEVNVIIRGSGVYRIEGQEIPVG
Ga0207577_102789	Ga0207577_1027891	F069143	VSALELARAALAAVDGDAEAVAHSEQSGLARFAGSE
Ga0207577_103262	Ga0207577_1032621	F017166	AMLFIGWLYLGEMSDVRSIKAAVTAAADSTAVALSQSANPERNTDADADGIFIKHIQTSSTLEDVSVKQSVEPISAGRLRQSVKVTARARTTLSEFFNMQGAEIDITATHDFDRKK
Ga0207577_103445	Ga0207577_1034451	F022740	AENTVIFVDKAAGAGSRNVGFYHRRRAQILAARSNELGGLVSFISVGGQPVNTTRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIRKLGWKIVQLKPDR
Ga0207577_103580	Ga0207577_1035802	F025120	MGVALPLTLFYLLALQTLSQLFTIAVSTFLTWGVTDFLANILHRPRLQNRTPGGAIREDWERRQKDS