 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026743 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072034 | Ga0207613 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-10 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 21652836 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 2 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014274 | Metagenome | 264 | Y |
| F015492 | Metagenome / Metatranscriptome | 254 | Y |
| F015863 | Metagenome / Metatranscriptome | 251 | Y |
| F022685 | Metagenome / Metatranscriptome | 213 | N |
| F029264 | Metagenome / Metatranscriptome | 189 | Y |
| F034742 | Metagenome | 174 | N |
| F041344 | Metagenome / Metatranscriptome | 160 | Y |
| F088662 | Metagenome | 109 | Y |
| F097964 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207613_100304 | Not Available | 756 | Open in IMG/M |
| Ga0207613_101014 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 610 | Open in IMG/M |
| Ga0207613_101100 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 599 | Open in IMG/M |
| Ga0207613_101663 | Not Available | 550 | Open in IMG/M |
| Ga0207613_102092 | Not Available | 524 | Open in IMG/M |
| Ga0207613_102353 | All Organisms → cellular organisms → Bacteria | 511 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207613_100304 | Ga0207613_1003041 | F022685 | LMKAILGLALGIALMSALQTVGVWSLQEHIKSQSNAGLPIGNTPVVGNFDADALKNGILPKLGPIDTSEGQRLAIEGAARRIDLQNRAVQKYLPR |
| Ga0207613_100304 | Ga0207613_1003042 | F015863 | YASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVRRFYTEQLTAEGFEVSDLGLMGLNPPTAALLGIDGMLSAKRPSTDDAIDVQIRTPDGIIPSRLLQIHWRKISATPG |
| Ga0207613_101014 | Ga0207613_1010141 | F034742 | QRTTETWTFLVGPPLTRLQFHRAIGTASIASQIVSVQNTPREFTVNIHSVEADWDDENQKVNVRVEIGIIANGATVTVTQIRYWVAILAQM |
| Ga0207613_101091 | Ga0207613_1010911 | F029264 | MEHFAIGANFEGAAARRNQRKRCDALTELENFGRQTDGLRRVVSNDAVFD |
| Ga0207613_101100 | Ga0207613_1011002 | F088662 | MITVAKSARYPREMLRVPERGSGGEMADKNFTDLNFAGLLAFDRAKR |
| Ga0207613_101416 | Ga0207613_1014161 | F097964 | DALRRSRPDRLELILQRVTFAHHALRPRLIVPEIGVSRFLVQFGEASRRGVDVKDASSAAARTA |
| Ga0207613_101663 | Ga0207613_1016631 | F015492 | MAMRHRIWVFAAAILALICAGLQSEARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIHWKSKDGSQTTIMRGQGLRAFQTIGEFRIEAAGDDSRSF |
| Ga0207613_102092 | Ga0207613_1020921 | F014274 | IAVALLPQPSEAINVLTCEKAQPFDCTAPSVNVTIGVLQAAVAVADPSAAVISEAEGLQPRVTRAGVIIIVGGLGALSQVTVLVIVAELPQPSTAVNILVCEEEQLLVDIAPSVEVILTTLQPSVADAEPSAAVIADEAGLQPSGTSAYDPVNAGGIRSLVQLTVLVMVAVLPQ |
| Ga0207613_102353 | Ga0207613_1023531 | F041344 | MSARIVSAFLACTVVCFVGAQLTHAQEATSANLPDQFQTGEMIQIHKLKKKKTESSSQAVGTASEQDAPPVPEQTPAVEEMPAQIPPREEKKTEPN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |