3300026722: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-A (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026722
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072128 | Ga0207480
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-A (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19240780
• Sequencing Scaffolds: 15
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.43
  • Long. (^o): -89.41
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002700	Metagenome / Metatranscriptome	536	Y
F002818	Metagenome	528	Y
F018214	Metagenome / Metatranscriptome	236	N
F020272	Metagenome / Metatranscriptome	225	Y
F030707	Metagenome / Metatranscriptome	184	Y
F036579	Metagenome	169	Y
F037367	Metagenome / Metatranscriptome	168	Y
F037849	Metagenome / Metatranscriptome	167	Y
F040280	Metagenome / Metatranscriptome	162	Y
F041230	Metagenome / Metatranscriptome	160	N
F041990	Metagenome / Metatranscriptome	159	Y
F054479	Metagenome / Metatranscriptome	139	Y
F073921	Metagenome / Metatranscriptome	120	Y
F074725	Metagenome	119	N
F090718	Metagenome / Metatranscriptome	108	Y
F091045	Metagenome	108	Y
F098887	Metagenome / Metatranscriptome	103	Y
F099534	Metagenome	103	Y
F105563	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207480_100010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei	1968
Ga0207480_100134	Not Available	1128
Ga0207480_100393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895
Ga0207480_100713	Not Available	792
Ga0207480_100855	All Organisms → cellular organisms → Bacteria	759
Ga0207480_101292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688
Ga0207480_101458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666
Ga0207480_102107	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	610
Ga0207480_102123	Not Available	609
Ga0207480_102529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585
Ga0207480_102992	Not Available	561
Ga0207480_103074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557
Ga0207480_104320	Not Available	512
Ga0207480_104671	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	502
Ga0207480_104730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207480_100010	Ga0207480_1000102	F054479	MRHDMESCDQGGEDRDKTWLDGPVARVKGKLSDDLAPMDRGNGEEQVRSRSMYQ
Ga0207480_100134	Ga0207480_1001342	F099534	MEGNTMGKYGTGVGMTDVAAMMKAIEAMHECRVSYHVTTRGQGHNGSMLIVCAAHFDVLPGSDRPKAIDVEHIWPSKAAPTFDGLCYNLLWQLDYAIQKAYEQMPLEPN
Ga0207480_100393	Ga0207480_1003931	F041990	MQYSRTHIYIAVAAGALIVLTFFGYLFWLNNQGPVLAKSEDHDPLSGTPNSISLNPLRDRTSEHAASKFIRGMRDG
Ga0207480_100713	Ga0207480_1007131	F040280	VTQFLGDEGEKAAALTYSATFVLMSVIYNTWWRYASGSRRLIAEGVPDSALRAISRAFDPGVPMYGAVFVLAFFSPLGAVFLTFAIAAFYLPSAALFDR
Ga0207480_100799	Ga0207480_1007991	F030707	LTRRTAISFLGAAGRESYLVAGAVRSLRTITGSAGIRYNTTGGTTFRIDLTVINSQPVLSRQGIALGVERGL
Ga0207480_100855	Ga0207480_1008551	F020272	QEADYFVNIDSVADLKFDAAAKQVSQFEPAVNKYRPDWTPEDLKKAKDEMRKEQPKKDGHYVEAFRYATGFVQY
Ga0207480_101292	Ga0207480_1012922	F002818	RKPFTIARMPSEVELYRDLVKTFWSGKDVICPKHPGVKMTGSFVQTTFADHVFLTCPRGRETYTIRQRPRQMEFDRQQVEGFVENLQRGDSILCYRCQSELEIDAEENATSGVTDYTFTCVRCFSYGRWIGKPELAKIGNPKKAKKAS
Ga0207480_101458	Ga0207480_1014582	F098887	HLDMEEQALHRIEDELGEGWLERWLDSGLEKIEAYLANHAAFLTYLETADQS
Ga0207480_102107	Ga0207480_1021072	F091045	IVSRDGQAALLLMDTTIVAQMTDRGLKRMDLKEATDTIRSAASKLFARMAIGAIMPLFDHGIAYHLRDLADAKYADGRLQLLRANGDEVFRDVEIGKGPLMESFSADEARAFAAHAKAARARLDR
Ga0207480_102123	Ga0207480_1021231	F090718	ATFEPDQAAAAAYDEQYAAWREIYRRMLEITDDGLLNPLWRAAGA
Ga0207480_102529	Ga0207480_1025291	F002700	EGMPPSELLVLHDPDGARSLAIVIFDNEDDYRQGDEILSNMDRGDTPGARTSVTRYDVAHRDSM
Ga0207480_102992	Ga0207480_1029921	F074725	CLMVLLFGCTAAPEPLSPYALSDAEVTAVVRGFYSSVKDLDAPSFRSLKAVRSSGGEVYVCGGMSSRNAGEQIFIGTLSAGRFVPDRIGKDQYSKGEILAKCQERGIPIQ
Ga0207480_103074	Ga0207480_1030741	F036579	VAVDVSVPRPAAVSRATAVPARLLLSGIVAASFLLRFVAALWHTTPLYFPDEYIYSGIARSLAESGKPLIRGSSAHFPAMLEPLLAAPDVEGR
Ga0207480_104051	Ga0207480_1040512	F073921	MSGSEVDAAMLDAAGLQPEENVLVLGGGSLALGAHDRVGDGWVYVVRSQVDELEELLGEAHAVGASGVAYLVGEAPVLPLPDGAVAAAVGRIATEDGA
Ga0207480_104320	Ga0207480_1043202	F018214	VPLHAARVVQSVIHMCPLLLIAEHEYPTVVSMGLRSRGECVRPLCHGYPFVIQQLTEVRPGCQDPGMAIYQIVLTGYMHVGK
Ga0207480_104549	Ga0207480_1045491	F105563	MSDQSVVPGKPSLTARIESEKSHPLAWKTVAKRAALVLVA
Ga0207480_104551	Ga0207480_1045511	F037367	GVTPAERYRLNEAKARLDYLTKHKAATVRRAQFARVTLELATKPKHAAAAAGRFDRTMSDAGGVLVREAEILLYALIVAGPLLLVGLGALAFGRMQRRRFEDRVLERT
Ga0207480_104671	Ga0207480_1046711	F041230	GTKMKTNLILQKVSFLHGLIDPSWIDGNPGQPGPIFRTAMTDYVVAELLRDISVNLHERDLATKVHNIGKELVSASSHALAAGWEDGDDICPPFKVGPRPHGDILPLTAAQPEPWLEHITPAMNDIVLAHAIRELASLTSSEKASNAIRQVGETIVKAAGSKLFEE
Ga0207480_104730	Ga0207480_1047302	F037849	VEADDTVVLTVVSSESEAEVVCGLLRTEGIECAYRDTEEIDSPLEDFIAAGSQEI