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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F105563 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 100 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVAGLAIYLVFP |
| Number of Associated Samples | 95 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 1.00 % |
| % of genes from short scaffolds (< 2000 bps) | 1.00 % |
| Associated GOLD sequencing projects | 93 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.41 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (99.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (21.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (43.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 40.26% β-sheet: 0.00% Coil/Unstructured: 59.74% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.41 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF10009 | DUF2252 | 49.00 |
| PF03706 | LPG_synthase_TM | 21.00 |
| PF13396 | PLDc_N | 4.00 |
| PF14691 | Fer4_20 | 2.00 |
| PF02517 | Rce1-like | 2.00 |
| PF01541 | GIY-YIG | 1.00 |
| PF01411 | tRNA-synt_2c | 1.00 |
| PF01370 | Epimerase | 1.00 |
| PF02274 | ADI | 1.00 |
| PF00005 | ABC_tran | 1.00 |
| PF12244 | DUF3606 | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG0392 | Predicted membrane flippase AglD2/YbhN, UPF0104 family | Cell wall/membrane/envelope biogenesis [M] | 21.00 |
| COG1266 | Membrane protease YdiL, CAAX protease family | Posttranslational modification, protein turnover, chaperones [O] | 2.00 |
| COG4449 | Predicted protease, Abi (CAAX) family | General function prediction only [R] | 2.00 |
| COG0013 | Alanyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 1.00 |
| COG1834 | N-Dimethylarginine dimethylaminohydrolase | Amino acid transport and metabolism [E] | 1.00 |
| COG2235 | Arginine deiminase | Amino acid transport and metabolism [E] | 1.00 |
| COG4874 | Uncharacterized conserved protein | Function unknown [S] | 1.00 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 99.00 % |
| All Organisms | root | All Organisms | 1.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300021178|Ga0210408_10448779 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9 | 1027 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 27.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 7.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 5.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 4.00% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 4.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 4.00% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 3.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 3.00% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 3.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 3.00% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 2.00% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.00% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 2.00% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 2.00% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 2.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 2.00% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.00% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 1.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.00% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 1.00% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 1.00% |
| Exposed Rock | Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock | 1.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 1.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001686 | Grasslands soil microbial communities from Hopland, California, USA | Environmental | Open in IMG/M |
| 3300005167 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 | Environmental | Open in IMG/M |
| 3300005176 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 | Environmental | Open in IMG/M |
| 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006604 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006605 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009521 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG | Environmental | Open in IMG/M |
| 3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
| 3300010303 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015 | Environmental | Open in IMG/M |
| 3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300012480 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610 | Host-Associated | Open in IMG/M |
| 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015241 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
| 3300017822 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 | Environmental | Open in IMG/M |
| 3300017932 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4 | Environmental | Open in IMG/M |
| 3300017999 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG | Environmental | Open in IMG/M |
| 3300018058 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018431 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104 | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021374 | Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08 | Environmental | Open in IMG/M |
| 3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300024287 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31 | Environmental | Open in IMG/M |
| 3300024290 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08 | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026722 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-A (SPAdes) | Environmental | Open in IMG/M |
| 3300027560 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes) | Environmental | Open in IMG/M |
| 3300027765 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes) | Environmental | Open in IMG/M |
| 3300027775 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes) | Environmental | Open in IMG/M |
| 3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027889 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) | Environmental | Open in IMG/M |
| 3300028713 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184 | Environmental | Open in IMG/M |
| 3300028716 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198 | Environmental | Open in IMG/M |
| 3300030707 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2) | Environmental | Open in IMG/M |
| 3300031090 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031200 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S | Environmental | Open in IMG/M |
| 3300031549 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24 | Environmental | Open in IMG/M |
| 3300031561 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 | Environmental | Open in IMG/M |
| 3300031572 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19 | Environmental | Open in IMG/M |
| 3300031681 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031765 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031779 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
| 3300031846 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19 | Environmental | Open in IMG/M |
| 3300031859 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25 | Environmental | Open in IMG/M |
| 3300031880 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25 | Environmental | Open in IMG/M |
| 3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300032008 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 | Environmental | Open in IMG/M |
| 3300032044 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20 | Environmental | Open in IMG/M |
| 3300032068 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300033475 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| C688J18823_110831541 | 3300001686 | Soil | VSTPATSGPPATAGKPSLAARIESESSHPLAWKTVVTRAAMV |
| Ga0066672_101263961 | 3300005167 | Soil | MSDQSVVPGKPSLAARIDQEKSHPLPWKTVAKRASMVVIAGLAIYLVFPA |
| Ga0066679_106697862 | 3300005176 | Soil | MSDQSVVPGKPSLAARIDQEKSHPLPWKTVAKRASMVVIAGLAIYLVFP |
| Ga0070680_1018136682 | 3300005336 | Corn Rhizosphere | VSDRPASSRERSLADRIDQQKAHPLAWQTVAKRAAVVLVAGVSIYLVFPTITEVFASWPR |
| Ga0070711_1000571702 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDQTAPARKPSLAARIEDEKSHPLAWKTVVTRAAMVLVAGVAIYLVFP |
| Ga0070685_110127512 | 3300005466 | Switchgrass Rhizosphere | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVLVAGLAIYLV |
| Ga0070763_101313151 | 3300005610 | Soil | VTINDKPAAPGKPDLAARIDQEKSQPLAWKTVAKRAAVVLIAGIAIYLVFPAITEVFASW |
| Ga0070717_110410493 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDQSVVPGKPSLTERIDREKSHPLAWKTVATRAALVVVAGL |
| Ga0075017_1005591811 | 3300006059 | Watersheds | MSDRSVTSGKPPLADRIETEKSHPLPWKAVAKRAAVVLVAGVSLYLVFPAI |
| Ga0075017_1014920861 | 3300006059 | Watersheds | VASDKPSLAVRIETEKSHPLAWKTVAKRAVVVLIAGVSIYLVFPAITE |
| Ga0075030_1004544651 | 3300006162 | Watersheds | MSDRSVTSSKPPLAARIETEKSHPLPWKAVAKRAAVVLVAGVSLYLVFPAITEVL |
| Ga0070765_1008765261 | 3300006176 | Soil | VTMNDKPAAPGKPDLAARIDQEKSQPLAWKTVAKRAAVV |
| Ga0074060_120594102 | 3300006604 | Soil | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAMRAALVVVAGLAIYLVFPAITE |
| Ga0074057_122853592 | 3300006605 | Soil | MSDQPVVPGKESLTARIDREKSHPLAWKTVAKRAALVVVAGLAIYLVFP |
| Ga0079220_121563962 | 3300006806 | Agricultural Soil | MSDQSVIPGKPSLAARIDQEKSHPLAWKTIATRAAMAGLAGLAIYLVFPAIT |
| Ga0075425_1017598071 | 3300006854 | Populus Rhizosphere | VTERSATPAKPPLAVRIDEEKTHPLAWKTVIKRAAAVLVTGIAI |
| Ga0075435_1005286351 | 3300007076 | Populus Rhizosphere | MSDQSVVPGKPSLTERIDREKSHPLAWKTVATRAALVLVAGLAIYLVFPAITEV |
| Ga0105242_102125103 | 3300009176 | Miscanthus Rhizosphere | MGDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVLVAGLA |
| Ga0105248_128404632 | 3300009177 | Switchgrass Rhizosphere | MGDQSVVPGKPSLTARIDREKSHPLAWKAVAKRAALVVVAGLAIYLVFPAITEVFASWPR |
| Ga0116222_11255902 | 3300009521 | Peatlands Soil | MSDRSVTSGKPSLAVRIETEKSHPLAWKAVAKRAAVVLIAGV |
| Ga0126384_113929131 | 3300010046 | Tropical Forest Soil | MSDQPAAPGKPSLAARIDEEKSHPLAWKTVAKRAALAVIAGLAIYL |
| Ga0134082_104036191 | 3300010303 | Grasslands Soil | MSDQSVVPGKASLTARIDREKSHPLAWKTVAKRAALV |
| Ga0074044_109695621 | 3300010343 | Bog Forest Soil | VTINDKPAAPGKPDLAARIDQEKSQPLAWKTVAKRAAVVAVAGIAIYLVFP |
| Ga0126376_117387072 | 3300010359 | Tropical Forest Soil | MSDQSVVPGKPSLAARIDEEKSHPLAWKTVAKRAALAV |
| Ga0126379_122777711 | 3300010366 | Tropical Forest Soil | MSDQSVAPGKPSLAARIDEEKSHPLAWKTVAQRAALAVLAGVAIYLVFPAITEV |
| Ga0134125_116872642 | 3300010371 | Terrestrial Soil | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALV |
| Ga0105239_118991312 | 3300010375 | Corn Rhizosphere | MSDQPAPARKPTLAARIEDEKSHPLAWKTVVTRAAMVLVAGVAIYLVFPAIT |
| Ga0105239_126313202 | 3300010375 | Corn Rhizosphere | MSDQPATARKPSLAARIEDEKSHPLAWKTVVTRAAMVLVAGVAIYLVFPAIT |
| Ga0105239_126468671 | 3300010375 | Corn Rhizosphere | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVAGLAIYL |
| Ga0126383_130681371 | 3300010398 | Tropical Forest Soil | MSDQSVAPGKPSLAARIDEEKSHPLAWKTVAQRAAMAVV |
| Ga0157346_10265581 | 3300012480 | Arabidopsis Rhizosphere | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVLV |
| Ga0157373_102294391 | 3300013100 | Corn Rhizosphere | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVLVAG |
| Ga0157369_118088212 | 3300013105 | Corn Rhizosphere | MGDQSVVPGKPSLTARIDREKSHPLAWKAVAKRAALVVVAGLAIYLVFPAITEVLA |
| Ga0137418_106553852 | 3300015241 | Vadose Zone Soil | MSDQSVVPGKPSLAARIDSEKSHPLAWKTVAKGCVSFGG |
| Ga0182036_106150462 | 3300016270 | Soil | MSDQSVVPGKPSLAARIDEEKSKPLAWKTVAKRAAMAVVAGLAIYLVFPAITEVL |
| Ga0182032_113841922 | 3300016357 | Soil | MSDQSVVSGKPSLAARIDEEKSRPLPWKTVAQRAAMAVLAGIAIYLVFPAITEVL |
| Ga0187802_100962241 | 3300017822 | Freshwater Sediment | VTSTKPSLAAKIDDEKTRPLAWKTVVSRAAVVLVAGITIYL |
| Ga0187814_102142531 | 3300017932 | Freshwater Sediment | MSDHPRAPSKPSLEARIDREKAHPLAWKTVVKRAVVVAVAGLSIYLVFPA |
| Ga0187767_103196072 | 3300017999 | Tropical Peatland | MSDQSAVPAKPSLAARIDQEKSHPLAWKTVASRAAMAVVAGLAIYLV |
| Ga0187766_107516941 | 3300018058 | Tropical Peatland | MNDQPASKPSLASRIESEKSHPLAWKTVVKRAAVVAVTGVSI |
| Ga0066655_101604251 | 3300018431 | Grasslands Soil | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVAGLAIYLVFP |
| Ga0210399_106608412 | 3300020581 | Soil | MSTPKQSDQPATPGKPSLAAKIESESSHPLAWKTVATRAAMVLV |
| Ga0210395_104725792 | 3300020582 | Soil | VSDPTVTSGKPSLAVRIETEKSHPLAWKTVAKRAVVVLIAGVSIYL |
| Ga0210405_113784591 | 3300021171 | Soil | VTINDKPAAPGKPDLAARIDQEKSQPLAWKTVAKRAAVVAVAGLAIY |
| Ga0210408_104487793 | 3300021178 | Soil | VSDGSAASDTPSLAARIDTEKSHPLAWKTVAKRAAVVAVTGISLY |
| Ga0210396_113823202 | 3300021180 | Soil | VSDPTVTSGKPSLAVRIETEKSHPLAWKTVAKRAVVVLIAGVSIYLV |
| Ga0213881_101571101 | 3300021374 | Exposed Rock | VSTSDKPAAPGKPSLAARIDEEKSHPLAWKTVAKRAATAAVAGI |
| Ga0210389_103935822 | 3300021404 | Soil | VTINDKPAAPGKPNLAVRIDQEKSQPLAWKTVAKRAAVVLIAGIAIYLVFPEIT |
| Ga0210386_116980172 | 3300021406 | Soil | MRDQSVVPGKPSLAARIDEEKSHPLAWKTVAKRAALAVIAGIAIYLVFPAITE |
| Ga0210383_111234851 | 3300021407 | Soil | MSDHPVAPSKPSLADKIETEKAHPLPWKTVAKRAVVVAVAGLSIYLVFPAI |
| Ga0210390_112230871 | 3300021474 | Soil | VTINDKPTAPGKPDLAARIDQEKSQPLAWKTVAKRAAVVAVAGIAIYL |
| Ga0247690_10486032 | 3300024287 | Soil | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVAGLAI |
| Ga0247667_10378021 | 3300024290 | Soil | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVAGLA |
| Ga0207692_101872672 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDQPAPARKPTLAARIEDEKSHPLAWKTVVTRAAMVLVAGVAIYLVFPAITE |
| Ga0207692_105137581 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDQSAAPGKPSLATRIDREKSHPLAWKTVATRAAMAVMA |
| Ga0207699_111775942 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MTERSATPAKPSLAVRIDEEKTHPLAWKTVVKRAAAVLVTGIAIYLVFPAITEV |
| Ga0207663_102344861 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MGPAGKPSLAARIEDEKSHSLPWKTLVKRAASVVVAGIA |
| Ga0207700_103258842 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDQSAAPGKPSLATRIDREKSHPLAWKTVATRAAMAVMAGLAIYLVFP |
| Ga0207664_111724982 | 3300025929 | Agricultural Soil | MSDQPAPARKPSLAARIEDEKSHPLAWKTVVTRAAMVLVAGVAI |
| Ga0207661_101343671 | 3300025944 | Corn Rhizosphere | MCPAGKPSLAARIEDEKSRSLPWKTLAKRAVAVVVAGIA |
| Ga0207667_116880332 | 3300025949 | Corn Rhizosphere | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVA |
| Ga0207677_109331712 | 3300026023 | Miscanthus Rhizosphere | MSDQPAPARKPTLAARIEDEKSHPLAWKTVVTRAAMVLVAGVAIYLVF |
| Ga0207703_113820692 | 3300026035 | Switchgrass Rhizosphere | MSDQSVVPGKPSLTARIDREKSHPLAWKSVAKRAALVVVAGLAIYLVFPAITEV |
| Ga0207480_1045491 | 3300026722 | Soil | MSDQSVVPGKPSLTARIESEKSHPLAWKTVAKRAALVLVA |
| Ga0207981_10548111 | 3300027560 | Soil | MVPGKESLTARIDREKSHPLAWKTVAKRAALVVVAGLAIYLVFPA |
| Ga0209073_104123941 | 3300027765 | Agricultural Soil | MSDQSVIPGKPSLAARIDQEKSHPLAWKTIATRAAMAGLAGLAIYLVFPAITEVLAAW |
| Ga0209177_100189313 | 3300027775 | Agricultural Soil | MSDQSVVPGKPSLTERIDREKSHPLAWKAVATRAA |
| Ga0209274_107504031 | 3300027853 | Soil | VTINDKPAAPGKPKLAARIDEEKSNPLAWKTVAKRAAVVAVAGIAIYLVFPAITEVFA |
| Ga0209380_102203181 | 3300027889 | Soil | VTINNKPAAPGKPNLAVRIDQEKSQPLAWKTVAKRAAVVAVAGIAIYLVF |
| Ga0307303_101848141 | 3300028713 | Soil | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVAGLAIY |
| Ga0307311_102067541 | 3300028716 | Soil | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVAGLAIYLVFPA |
| Ga0310038_105119331 | 3300030707 | Peatlands Soil | MSDRSVTSGKPPLADRIETEKSHPLPWKAVAKRAAVVLVAGVSLYLVFP |
| Ga0265760_102164751 | 3300031090 | Soil | VTINDKPAAPGKPNLAVRIDEEKSQPLAWKTVAKRAAVVAIAGVAIYLVFPTITEVFAS |
| Ga0307496_101060392 | 3300031200 | Soil | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVAGLAIYLVFPAITEVFA |
| Ga0318571_101626882 | 3300031549 | Soil | LSDLTAPVGEPSLVAKIESETTHPLAWKAVVKRAAAVAIAGLAIYLVF |
| Ga0318528_104648031 | 3300031561 | Soil | VSNPSATPVKPSLSARIESEKTHPLAWKAVAKRAAAVVIAGIAIYLVFPAIT |
| Ga0318515_102824292 | 3300031572 | Soil | LTSPSVTSGEPSFAVKIDSEKAHPLAWKAVAKRAVVVVVAGIAIYLVFPAITEV |
| Ga0318572_104928971 | 3300031681 | Soil | MSDQSVAPGKPSLAARIDQEKSHPLAWKTVAQRAAMAVLAGLAIYLVFPAIT |
| Ga0307468_1001726621 | 3300031740 | Hardwood Forest Soil | MSDQPAPARKPTLAARIEDEKSHPLAWKTVVTRAAMVLVAGVAI |
| Ga0318554_102179813 | 3300031765 | Soil | MGDQPASPGKPSLAVRIDQEKSRPLDWKAVAKRAATAVVAGLAIYL |
| Ga0318546_102842713 | 3300031771 | Soil | MGDQPASPGKPSLAVRIDQEKSRPLDWKAVAKRAATAVVAGLAIYLVFPA |
| Ga0318566_106742572 | 3300031779 | Soil | MSDQSVVSGKPSLAARIDEEKSRPLPWKTVAQRAAMAVLAGIA |
| Ga0318547_106160742 | 3300031781 | Soil | MSDQSVVSGKPSLAARIDEEKSRPLPWKTVAQRAAMAVLA |
| Ga0307478_101788362 | 3300031823 | Hardwood Forest Soil | VTINDKPAAPGKPDLAARIDQEKSQPLAWKTVAKRAAVVAVAGLAIYLVFP |
| Ga0318512_102920231 | 3300031846 | Soil | MSDQSVAPGKPSLAARIDQEKSHPLAWKTVAQRAAMAVLAGLA |
| Ga0318527_100856841 | 3300031859 | Soil | VTTSDKPTTPGKPPLADRIDQEKSHPLAWKTVAKRAA |
| Ga0318544_103603962 | 3300031880 | Soil | LSDPSVTSGEPSIAVKIDSEKTHPLAWKSVAKRAAGVVVAGIAIYLVFPA |
| Ga0318551_105910421 | 3300031896 | Soil | MTTNDEPTVTGKPSLAVRIDEQKSHPLAWKTVAKRAATAAVTGIAIY |
| Ga0318520_104410752 | 3300031897 | Soil | MSDQSVAPGKPSLAARIDQEKSHPLAWKTVAQRAAMA |
| Ga0318562_106670241 | 3300032008 | Soil | MSDQSVVPGKPSLAARIDEEKSHPLAWKTVARRAALAVVAGIAIYLV |
| Ga0318558_107078301 | 3300032044 | Soil | VSNPSATPVKPSLSARIESEKTHPLAWKAVAKRAAAVVIAGIAIYLVFPAITE |
| Ga0318553_100499392 | 3300032068 | Soil | LSDLTAAPGEPSLAAKIESETTHPLAWKAVVKRAAAVAIAGLAIYLVFPAITEVL |
| Ga0306924_120661992 | 3300032076 | Soil | MSDQPAVSGKPSLAERIDQEKSHPLAWKTVASRAAMAVIAGVAIYLVFPAIT |
| Ga0307472_1024359372 | 3300032205 | Hardwood Forest Soil | MSDQSVVPGKPSLTARIDREKSHPLAWKTVAKRAALVVVAGLAIYLVFPAITEVL |
| Ga0306920_1002614301 | 3300032261 | Soil | VGEPSLVAKIESETTHPLAWKAVVKRAAAVAIAGLAIYLVFPAITE |
| Ga0335085_108487882 | 3300032770 | Soil | MVMGDQPASKPSLAARIDQEKSRPLAWKAVVKRAAVAAIAGLAIYLVFPAI |
| Ga0335085_117879451 | 3300032770 | Soil | MSDQSVAPGKPSLATRIDREKSHPLAWKTVATRAAMAVMAGLAIYLVFPAITE |
| Ga0335074_100515305 | 3300032895 | Soil | VTINDKPTASGKPTLAARIDEEKSQPLAWKTVAKRAAVVAVAGLAIYLV |
| Ga0335083_100925261 | 3300032954 | Soil | MSDQSVVPGKPSLAARIDEEKSHPLAWKTVARRAALAVVAGIAIYLVFPAITE |
| Ga0310811_104841581 | 3300033475 | Soil | MSDQSVVPDKPSLTERIDREKSHPLAWKTVAKRAALVLVAG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |